Wall clock time and date at job start Tue Mar 31 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47397 * 269.99910 * 3 2 1 5 5 H 1.48510 * 109.46813 * 29.99739 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99357 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.84868 * 334.66980 * 10 9 7 12 12 C 1.53782 * 113.60942 * 105.86540 * 10 9 7 13 13 C 1.53962 * 87.01677 * 139.95042 * 12 10 9 14 14 H 1.09003 * 113.61078 * 89.19816 * 13 12 10 15 15 C 1.52994 * 113.66558 * 220.06515 * 13 12 10 16 16 N 1.46500 * 109.47262 * 272.55784 * 15 13 12 17 17 C 1.34780 * 120.00380 * 180.02562 * 16 15 13 18 18 O 1.21285 * 119.99663 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00136 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.46846 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.46979 * 180.02562 * 20 19 17 22 22 C 1.53777 * 113.60992 * 274.13861 * 21 20 19 23 23 C 1.53961 * 87.01547 * 220.04796 * 22 21 20 24 24 C 1.53782 * 87.11344 * 25.36520 * 23 22 21 25 25 C 1.53781 * 87.11132 * 334.63696 * 13 12 10 26 26 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 28 28 H 1.08994 * 113.61532 * 254.52460 * 12 10 9 29 29 H 1.08994 * 113.61779 * 25.43814 * 12 10 9 30 30 H 1.08997 * 109.47525 * 32.56108 * 15 13 12 31 31 H 1.08999 * 109.47229 * 152.56146 * 15 13 12 32 32 H 0.97002 * 120.00372 * 0.02562 * 16 15 13 33 33 H 1.08993 * 109.47172 * 299.99881 * 19 17 16 34 34 H 1.09000 * 109.47152 * 60.00744 * 19 17 16 35 35 H 1.09005 * 109.47274 * 300.00323 * 20 19 17 36 36 H 1.08999 * 109.47368 * 60.00316 * 20 19 17 37 37 H 1.08993 * 112.84732 * 45.33428 * 21 20 19 38 38 H 1.08999 * 113.61641 * 334.56512 * 22 21 20 39 39 H 1.08998 * 113.61800 * 105.47575 * 22 21 20 40 40 H 1.08996 * 113.53711 * 270.80952 * 23 22 21 41 41 H 1.09001 * 113.74496 * 139.94528 * 23 22 21 42 42 H 1.08996 * 113.61323 * 220.09324 * 24 23 22 43 43 H 1.08998 * 113.68788 * 89.19701 * 24 23 22 44 44 H 1.09003 * 113.61141 * 270.80985 * 25 13 12 45 45 H 1.09002 * 113.61683 * 139.90949 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0560 -3.5693 -0.4292 12 6 2.0325 -4.3828 1.3560 13 6 1.8605 -5.6903 0.5615 14 1 2.8043 -6.1609 0.2856 15 6 0.8717 -6.6696 1.1970 16 7 1.5753 -7.5147 2.1651 17 6 0.9007 -8.4582 2.8516 18 8 -0.2887 -8.6078 2.6677 19 6 1.6244 -9.3270 3.8478 20 6 0.6355 -10.3064 4.4833 21 6 1.3701 -11.1882 5.4952 22 6 2.0270 -12.4292 4.8682 23 6 1.5597 -13.2060 6.1127 24 6 0.4463 -12.1549 6.2549 25 6 1.2468 -4.8365 -0.5607 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0039 28 1 2.9743 -4.3228 1.9013 29 1 1.1692 -4.1290 1.9710 30 1 0.0847 -6.1127 1.7054 31 1 0.4308 -7.2956 0.4213 32 1 2.5266 -7.3952 2.3120 33 1 2.4119 -9.8836 3.3399 34 1 2.0644 -8.7009 4.6239 35 1 -0.1519 -9.7495 4.9913 36 1 0.1950 -10.9327 3.7075 37 1 2.0377 -10.6216 6.1442 38 1 1.5495 -12.7564 3.9446 39 1 3.1108 -12.3529 4.7816 40 1 2.2803 -13.1921 6.9304 41 1 1.1895 -14.2071 5.8918 42 1 0.2559 -11.8572 7.2860 43 1 -0.4648 -12.4058 5.7116 44 1 0.1683 -4.7069 -0.4706 45 1 1.5553 -5.1422 -1.5604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691697373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:40 Heat of formation + Delta-G solvation = -11.020731 kcal Electronic energy + Delta-G solvation = -20994.732524 eV Core-core repulsion = 17819.731993 eV Total energy + Delta-G solvation = -3175.000531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98196 -39.08467 -38.36223 -34.66658 -33.30399 -32.92922 -30.28483 -27.97933 -26.13280 -25.78452 -25.09152 -23.83210 -22.30800 -21.02249 -20.34110 -19.74007 -19.00933 -17.15537 -16.92073 -16.18967 -16.01802 -15.59834 -14.98956 -14.86353 -14.64230 -14.11114 -13.73740 -13.46322 -13.18044 -13.05515 -12.87694 -12.76661 -12.26990 -11.89939 -11.80512 -11.65902 -11.37291 -11.26178 -11.22398 -10.87994 -10.84622 -10.54685 -10.52381 -10.41538 -10.24508 -10.14410 -9.81711 -9.76871 -9.46527 -8.99457 -8.86915 -6.96588 -5.78571 -3.07463 2.64292 3.19359 3.42280 3.47301 3.49219 4.24846 4.31797 4.38895 4.52437 4.57920 4.68056 4.89068 4.95712 5.00479 5.04015 5.23140 5.25162 5.36622 5.39580 5.43494 5.46518 5.47179 5.51662 5.57258 5.60470 5.77347 5.83507 5.86277 5.94837 5.96864 6.03618 6.09179 6.22080 6.27234 6.31764 6.36484 6.48410 6.59433 6.83002 7.11595 7.50540 7.68544 8.23084 8.39974 9.50958 10.09448 10.43638 11.43798 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041306 B = 0.002197 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.700383 B =12740.841781 C =12864.404090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.074 0.926 12 C -0.160 4.160 13 C -0.127 4.127 14 H 0.087 0.913 15 C 0.131 3.869 16 N -0.727 5.727 17 C 0.507 3.493 18 O -0.545 6.545 19 C -0.139 4.139 20 C -0.094 4.094 21 C -0.112 4.112 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.142 4.142 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -24.821 9.499 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.092 0.908 12 C -0.201 4.201 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.008 3.992 16 N -0.379 5.379 17 C 0.293 3.707 18 O -0.423 6.423 19 C -0.179 4.179 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.177 4.177 23 C -0.182 4.182 24 C -0.176 4.176 25 C -0.182 4.182 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.233 0.767 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.132 -24.723 9.347 26.925 hybrid contribution 0.657 1.035 0.093 1.229 sum 5.789 -23.689 9.440 26.149 Atomic orbital electron populations 1.69662 1.05136 1.25741 1.57455 1.24779 0.95536 0.97807 1.02874 0.86184 0.78644 0.83805 0.77509 1.21699 1.21766 1.20754 1.19301 0.91062 0.84252 1.42908 0.91104 1.42417 1.05765 0.99883 1.87064 1.21523 0.95216 0.85069 0.92862 0.90791 1.23969 1.01252 0.94813 1.00095 1.22667 0.98421 0.94507 0.99028 0.89441 1.21418 0.95038 0.91860 0.90891 1.46112 1.12858 1.36383 1.42506 1.20773 0.87747 0.80600 0.81562 1.90704 1.15470 1.69665 1.66445 1.21673 0.99853 0.98129 0.98270 1.21323 0.97186 0.96779 0.97864 1.22599 0.98070 0.94856 0.97539 1.23033 1.00451 0.96430 0.97747 1.22842 0.98699 0.98162 0.98483 1.22935 0.97514 0.96585 1.00526 1.23425 1.00918 0.97085 0.96737 0.93448 0.78065 0.92804 0.90364 0.91323 0.91901 0.76653 0.89080 0.89013 0.91067 0.91144 0.89238 0.90062 0.91625 0.90368 0.91628 0.91597 0.90000 0.90105 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.84 5.41 -52.63 -0.28 -18.12 16 10 C 0.17 3.19 4.47 -67.11 -0.30 2.89 16 11 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 12 C -0.16 -2.64 7.45 -25.82 -0.19 -2.83 16 13 C -0.13 -1.69 3.75 -89.72 -0.34 -2.03 16 14 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.13 1.74 5.51 -4.05 -0.02 1.72 16 16 N -0.73 -8.07 5.56 -60.30 -0.33 -8.41 16 17 C 0.51 6.17 7.83 -10.99 -0.09 6.08 16 18 O -0.55 -9.00 15.98 5.55 0.09 -8.91 16 19 C -0.14 -1.13 5.70 -27.88 -0.16 -1.29 16 20 C -0.09 -0.81 4.33 -26.73 -0.12 -0.93 16 21 C -0.11 -0.77 3.64 -89.80 -0.33 -1.09 16 22 C -0.14 -0.87 7.65 -25.83 -0.20 -1.07 16 23 C -0.14 -0.87 8.09 -25.82 -0.21 -1.08 16 24 C -0.14 -0.93 7.65 -25.92 -0.20 -1.12 16 25 C -0.14 -2.26 7.39 -25.92 -0.19 -2.45 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.39 10.28 7.90 -40.82 -0.32 9.96 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 30 H 0.07 1.05 7.85 -51.93 -0.41 0.65 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.40 3.35 8.47 -40.82 -0.35 3.01 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 44 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -32.16 365.74 -10.08 -42.24 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.18 Total: 8.50 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -2.58 Total: -10.61 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.10 Total: -54.05 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.16 -10.08 -42.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691697373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.223 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds