Wall clock time and date at job start Tue Mar 31 2020 01:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47122 * 2 1 4 4 C 1.35403 * 126.43706 * 265.16119 * 3 2 1 5 5 C 1.35561 * 107.16152 * 180.21912 * 4 3 2 6 6 N 1.33102 * 108.34871 * 359.77864 * 5 4 3 7 7 C 1.31614 * 109.09585 * 359.97438 * 6 5 4 8 8 C 1.47406 * 125.86580 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00423 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99961 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46684 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47465 * 305.00253 * 12 11 10 14 14 C 1.53002 * 109.47069 * 65.00525 * 12 11 10 15 15 C 1.53003 * 109.47015 * 184.99978 * 12 11 10 16 16 N 1.46497 * 109.47315 * 175.00186 * 15 12 11 17 17 C 1.36935 * 120.00006 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00115 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99994 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99866 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47227 * 90.00272 * 21 19 17 23 23 H 1.48503 * 109.46916 * 210.00328 * 21 19 17 24 24 H 1.48494 * 109.47296 * 329.99731 * 21 19 17 25 25 H 1.09009 * 109.46771 * 300.00094 * 1 2 3 26 26 H 1.09001 * 109.47164 * 59.99682 * 1 2 3 27 27 H 1.09000 * 109.46777 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47077 * 239.99879 * 2 1 3 29 29 H 1.09000 * 109.47344 * 119.99797 * 2 1 3 30 30 H 1.08002 * 126.42550 * 359.97438 * 4 3 2 31 31 H 1.07995 * 125.82950 * 179.76865 * 5 4 3 32 32 H 0.96995 * 120.00018 * 0.27663 * 10 8 7 33 33 H 1.09000 * 109.47212 * 300.00355 * 11 10 8 34 34 H 1.09001 * 109.46577 * 60.00430 * 11 10 8 35 35 H 1.09001 * 109.46743 * 179.97438 * 14 12 11 36 36 H 1.09000 * 109.47048 * 299.99452 * 14 12 11 37 37 H 1.08994 * 109.47199 * 59.99565 * 14 12 11 38 38 H 1.09005 * 109.47422 * 295.00404 * 15 12 11 39 39 H 1.09005 * 109.46949 * 55.00013 * 15 12 11 40 40 H 0.96998 * 119.99774 * 359.97438 * 16 15 12 41 41 H 0.96996 * 119.99191 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3730 2.1088 -1.0854 5 6 2.7686 3.3262 -0.6391 6 7 2.6538 3.3440 0.6868 7 6 2.1982 2.1787 1.0952 8 6 1.9338 1.7969 2.4942 9 8 1.5119 0.6859 2.7520 10 7 2.1598 2.6792 3.4877 11 6 1.8965 2.2999 4.8781 12 6 2.2331 3.4741 5.7994 13 1 3.2607 3.7917 5.6226 14 6 1.2828 4.6378 5.5104 15 6 2.0776 3.0388 7.2579 16 7 2.5137 4.1237 8.1405 17 6 2.4653 3.9621 9.4995 18 1 2.1060 3.0348 9.9206 19 6 2.8791 4.9899 10.3358 20 7 3.3175 6.1198 9.8226 21 14 2.8138 4.7692 12.1896 22 1 4.0993 4.1985 12.6657 23 1 2.5867 6.0862 12.8371 24 1 1.7032 3.8476 12.5395 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.3494 1.7796 -2.1138 31 1 3.1176 4.1423 -1.2543 32 1 2.4925 3.5667 3.2818 33 1 0.8439 2.0402 4.9908 34 1 2.5131 1.4411 5.1433 35 1 1.5224 5.4742 6.1672 36 1 1.3936 4.9480 4.4714 37 1 0.2552 4.3203 5.6872 38 1 1.0317 2.8058 7.4581 39 1 2.6881 2.1544 7.4402 40 1 2.8375 4.9561 7.7623 41 1 3.6063 6.8381 10.4070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715223209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:17 Heat of formation + Delta-G solvation = 3.877598 kcal Electronic energy + Delta-G solvation = -21398.729503 eV Core-core repulsion = 18120.834669 eV Total energy + Delta-G solvation = -3277.894835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.28067 -40.52589 -38.24905 -36.32663 -35.71597 -34.11352 -32.06829 -31.31826 -30.58109 -27.82859 -27.16121 -25.20367 -24.50684 -23.41596 -22.25736 -21.59800 -20.79681 -19.27419 -18.66570 -17.45474 -17.13654 -17.00289 -16.46325 -16.20212 -15.58160 -15.47054 -15.44850 -15.15274 -14.79165 -14.66111 -14.43937 -14.14069 -13.68749 -13.58370 -13.54811 -13.00018 -12.95384 -12.80333 -12.33313 -12.20005 -12.16285 -12.01128 -11.74589 -11.66476 -11.36846 -11.15495 -10.93495 -10.84481 -10.25595 -9.50396 -8.98742 -7.94436 -5.22964 0.32237 1.42114 1.48253 1.49921 1.58394 1.62849 2.25478 2.36622 2.57511 3.29873 3.39251 3.69055 3.74898 3.85356 3.94727 4.05287 4.06997 4.33524 4.34903 4.41707 4.48430 4.53000 4.68719 4.69766 4.74827 4.80106 4.92499 5.03254 5.11790 5.14337 5.24582 5.27273 5.36570 5.45275 5.50757 5.67042 5.93283 6.27599 6.30865 6.81807 7.04385 7.34687 8.10128 8.34036 9.29248 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039268 B = 0.002778 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.872583 B =10075.692267 C =10560.736277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.091 3.909 3 N -0.413 5.413 4 C -0.006 4.006 5 C -0.049 4.049 6 N -0.468 5.468 7 C 0.102 3.898 8 C 0.601 3.399 9 O -0.565 6.565 10 N -0.695 5.695 11 C 0.141 3.859 12 C -0.095 4.095 13 H 0.076 0.924 14 C -0.136 4.136 15 C 0.159 3.841 16 N -0.743 5.743 17 C -0.246 4.246 18 H 0.075 0.925 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.270 1.270 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.131 0.869 29 H 0.089 0.911 30 H 0.228 0.772 31 H 0.202 0.798 32 H 0.416 0.584 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.376 0.624 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 -11.121 -27.248 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.029 4.029 3 N -0.094 5.094 4 C -0.145 4.145 5 C -0.202 4.202 6 N -0.191 5.191 7 C -0.155 4.155 8 C 0.387 3.613 9 O -0.444 6.444 10 N -0.346 5.346 11 C 0.017 3.983 12 C -0.115 4.115 13 H 0.094 0.906 14 C -0.193 4.193 15 C 0.032 3.968 16 N -0.386 5.386 17 C -0.378 4.378 18 H 0.093 0.907 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.195 1.195 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.149 0.851 29 H 0.108 0.892 30 H 0.245 0.755 31 H 0.219 0.781 32 H 0.253 0.747 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.208 0.792 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.211 -11.568 -26.274 29.015 hybrid contribution 0.208 0.336 0.574 0.697 sum -4.003 -11.232 -25.700 28.331 Atomic orbital electron populations 1.22024 0.93260 1.04256 1.01935 1.22309 0.96552 0.77817 1.06230 1.45531 1.44456 1.13453 1.05925 1.23683 1.03647 0.92977 0.94238 1.23032 1.07699 0.99309 0.90210 1.70150 1.15344 1.18979 1.14589 1.22380 1.13162 0.89647 0.90342 1.16670 0.77638 0.84244 0.82782 1.90770 1.47917 1.21563 1.84190 1.45646 1.65608 1.17405 1.05955 1.21267 1.01641 0.96881 0.78522 1.21341 1.00758 0.95469 0.93895 0.90606 1.21720 0.98901 0.97463 1.01226 1.20710 0.96966 0.90727 0.88414 1.42529 1.77936 1.15735 1.02391 1.19644 1.34753 0.99322 0.84056 0.90674 1.25571 1.02553 0.96196 1.02490 1.69815 1.51177 1.05823 1.35179 0.85128 0.77872 0.76506 0.80187 1.21407 1.22131 1.19468 0.94545 0.91074 0.88588 0.85122 0.89245 0.75550 0.78136 0.74698 0.90879 0.91144 0.93719 0.91354 0.92607 0.95718 0.95916 0.79158 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.23 71.98 0.74 -1.31 16 2 C 0.09 1.23 6.18 86.38 0.53 1.77 16 3 N -0.41 -7.46 2.76 -516.44 -1.42 -8.89 16 4 C -0.01 -0.08 11.53 83.52 0.96 0.88 16 5 C -0.05 -0.83 11.85 83.88 0.99 0.16 16 6 N -0.47 -11.48 10.89 -189.54 -2.06 -13.55 16 7 C 0.10 2.55 7.78 136.28 1.06 3.61 16 8 C 0.60 16.95 7.81 86.66 0.68 17.63 16 9 O -0.57 -17.71 14.50 -4.05 -0.06 -17.76 16 10 N -0.70 -18.51 5.28 -466.38 -2.46 -20.98 16 11 C 0.14 3.93 5.06 86.38 0.44 4.37 16 12 C -0.10 -3.04 2.46 -10.79 -0.03 -3.06 16 13 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.14 -4.21 8.94 71.98 0.64 -3.56 16 15 C 0.16 6.37 5.65 86.38 0.49 6.86 16 16 N -0.74 -38.14 5.33 -343.44 -1.83 -39.97 16 17 C -0.25 -13.95 9.99 84.04 0.84 -13.11 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 20 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 21 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H 0.04 0.72 7.84 -2.38 -0.02 0.70 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.13 0.72 8.13 -2.39 -0.02 0.71 16 29 H 0.09 1.62 6.64 -2.39 -0.02 1.61 16 30 H 0.23 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.42 10.49 7.33 -92.71 -0.68 9.81 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 1.63 7.18 -2.39 -0.02 1.61 16 36 H 0.07 1.79 7.18 -2.39 -0.02 1.77 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.38 20.37 6.85 -92.71 -0.64 19.73 16 41 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -73.02 344.21 2.00 -71.02 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.28 Total: 30.74 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 7.81 Total: 10.28 kcal Atomic # 7 Polarization: -135.51 SS G_CDS: -7.50 Total: -143.01 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.06 Total: -17.76 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -73.02 2.00 -71.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715223209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.898 kcal (2) G-P(sol) polarization free energy of solvation -73.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds