Wall clock time and date at job start Tue Mar 31 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.88297 * 54.29798 * 11 10 9 13 13 C 1.55150 * 111.00434 * 290.41677 * 11 10 9 14 14 C 1.54327 * 102.94269 * 206.41933 * 13 11 10 15 15 N 1.47019 * 107.26825 * 22.19794 * 14 13 11 16 16 C 1.34774 * 125.64703 * 181.09922 * 15 14 13 17 17 O 1.21282 * 120.00415 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00131 * 359.96889 * 16 15 14 19 19 C 1.53000 * 109.47422 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.47233 * 179.97438 * 19 18 16 21 21 C 1.53785 * 113.61555 * 274.14032 * 20 19 18 22 22 C 1.53961 * 87.01701 * 220.05001 * 21 20 19 23 23 C 1.53777 * 87.10998 * 25.36324 * 22 21 20 24 24 C 1.47468 * 108.72402 * 1.02039 * 15 14 13 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 28 28 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 29 29 H 1.08998 * 110.72381 * 324.78645 * 13 11 10 30 30 H 1.08999 * 110.71895 * 88.06134 * 13 11 10 31 31 H 1.09007 * 109.87638 * 141.60933 * 14 13 11 32 32 H 1.08997 * 109.88376 * 262.61842 * 14 13 11 33 33 H 1.09004 * 109.47202 * 300.00472 * 18 16 15 34 34 H 1.09004 * 109.47318 * 60.00147 * 18 16 15 35 35 H 1.08994 * 109.47371 * 300.00350 * 19 18 16 36 36 H 1.09004 * 109.46978 * 60.00560 * 19 18 16 37 37 H 1.08993 * 112.84736 * 45.33714 * 20 19 18 38 38 H 1.08997 * 113.61254 * 334.56835 * 21 20 19 39 39 H 1.08994 * 113.61357 * 105.46944 * 21 20 19 40 40 H 1.08997 * 113.53431 * 270.81077 * 22 21 20 41 41 H 1.08994 * 113.74379 * 139.94626 * 22 21 20 42 42 H 1.09004 * 113.61082 * 220.09153 * 23 22 21 43 43 H 1.08999 * 113.69283 * 89.20580 * 23 22 21 44 44 H 1.09004 * 110.40304 * 217.08604 * 24 15 14 45 45 H 1.09000 * 110.34845 * 94.75302 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3598 -4.7286 -0.8295 13 6 0.3178 -4.9144 1.3549 14 6 -0.0608 -6.4082 1.4378 15 7 0.8592 -7.1411 0.5558 16 6 0.8431 -8.4705 0.3343 17 8 1.6533 -8.9700 -0.4173 18 6 -0.1817 -9.3363 1.0208 19 6 0.0175 -10.7937 0.5996 20 6 -1.0225 -11.6728 1.2971 21 6 -0.5967 -12.1352 2.7007 22 6 -1.2163 -13.5006 2.3510 23 6 -0.9625 -13.1504 0.8753 24 6 1.8015 -6.1810 -0.0483 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6853 -3.7142 -0.8912 28 1 2.6841 -3.7150 0.8887 29 1 0.9770 -4.6373 2.1775 30 1 -0.5757 -4.2900 1.3482 31 1 0.0482 -6.7618 2.4631 32 1 -1.0889 -6.5491 1.1045 33 1 -0.0647 -9.2507 2.1012 34 1 -1.1821 -9.0099 0.7367 35 1 -0.0998 -10.8790 -0.4806 36 1 1.0179 -11.1204 0.8835 37 1 -2.0262 -11.2493 1.2627 38 1 0.4837 -12.1688 2.8402 39 1 -1.1126 -11.6142 3.5071 40 1 -2.2732 -13.5771 2.6062 41 1 -0.6329 -14.3507 2.7046 42 1 -1.7734 -13.4479 0.2104 43 1 0.0173 -13.4619 0.5135 44 1 2.0194 -6.4598 -1.0793 45 1 2.7210 -6.1342 0.5353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752936228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:13 Heat of formation + Delta-G solvation = -42.771763 kcal Electronic energy + Delta-G solvation = -21521.656882 eV Core-core repulsion = 18345.279522 eV Total energy + Delta-G solvation = -3176.377359 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24495 -39.78557 -38.86417 -36.75351 -34.22646 -33.56318 -31.69538 -30.31615 -27.91200 -26.52150 -26.25667 -24.64857 -24.03091 -22.69098 -21.45999 -20.37572 -20.01657 -19.38112 -18.14619 -17.66653 -16.74470 -16.53332 -16.26614 -16.03673 -15.69083 -15.18593 -15.09987 -15.05398 -14.61161 -14.06553 -13.97201 -13.70591 -13.55937 -13.28713 -13.10989 -12.87919 -12.78643 -12.58894 -12.32556 -12.20511 -11.93635 -11.89550 -11.86264 -11.71544 -11.41039 -11.27934 -11.18037 -10.98086 -10.93512 -10.79581 -9.73350 -9.12387 -8.40572 -5.34619 1.57215 1.59337 1.68869 1.85457 1.92103 2.70765 3.27831 3.39195 3.56602 3.62220 3.68103 3.77420 3.78621 3.94577 4.01216 4.10562 4.20937 4.26691 4.29150 4.36485 4.46129 4.52624 4.66042 4.66433 4.71943 4.77835 4.83836 4.90919 4.91933 4.92833 4.98915 5.03416 5.11064 5.13035 5.16650 5.20272 5.29947 5.32297 5.45275 5.57637 5.68196 6.47949 6.50099 7.07981 7.09149 7.98854 8.09524 9.11714 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.054868 B = 0.002427 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.193100 B =11533.020732 C =11794.771650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.103 4.103 3 Si 1.128 2.872 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.337 4.337 8 H 0.064 0.936 9 N -0.752 5.752 10 C 0.170 3.830 11 C -0.098 4.098 12 H 0.076 0.924 13 C -0.118 4.118 14 C 0.106 3.894 15 N -0.620 5.620 16 C 0.518 3.482 17 O -0.592 6.592 18 C -0.124 4.124 19 C -0.089 4.089 20 C -0.108 4.108 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.144 4.144 24 C 0.118 3.882 25 H 0.245 0.755 26 H 0.363 0.637 27 H 0.015 0.985 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 -24.840 6.907 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.294 4.294 3 Si 0.952 3.048 4 H -0.218 1.218 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.469 4.469 8 H 0.082 0.918 9 N -0.397 5.397 10 C 0.043 3.957 11 C -0.118 4.118 12 H 0.094 0.906 13 C -0.156 4.156 14 C -0.016 4.016 15 N -0.353 5.353 16 C 0.310 3.690 17 O -0.473 6.473 18 C -0.163 4.163 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.177 4.177 22 C -0.179 4.179 23 C -0.181 4.181 24 C -0.006 4.006 25 H 0.056 0.944 26 H 0.196 0.804 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.905 -23.571 6.517 24.765 hybrid contribution 0.123 -1.382 -0.377 1.438 sum -3.782 -24.953 6.140 25.974 Atomic orbital electron populations 1.70997 1.07046 1.27965 1.56069 1.27206 0.97186 1.04591 1.00438 0.82624 0.73392 0.71622 0.77116 1.21773 1.20290 1.20611 1.20378 0.92371 0.87151 1.46962 0.91759 1.42465 1.04894 1.01661 1.90713 1.20571 0.93339 0.84056 0.97725 1.22356 0.97501 0.92816 0.99088 0.90597 1.22602 1.01087 0.95505 0.96438 1.22222 0.93837 0.90534 0.95002 1.48706 1.33960 1.06296 1.46348 1.21249 0.85629 0.80883 0.81255 1.90677 1.43141 1.73465 1.39981 1.21696 0.98158 0.94185 1.02286 1.21270 0.98954 0.92475 1.00050 1.22591 0.99293 0.94554 0.96159 1.23032 1.00812 0.97037 0.96771 1.22848 1.01565 0.97440 0.95999 1.22965 1.01922 0.95985 0.97229 1.22038 0.92756 0.87127 0.98638 0.94417 0.80412 0.96704 0.95682 0.90777 0.90055 0.88678 0.89150 0.86744 0.86813 0.92841 0.92761 0.87947 0.90704 0.90564 0.89390 0.91448 0.91190 0.90835 0.91712 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.16 13.70 21.65 0.30 -59.87 16 2 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 3 Si 1.13 51.67 29.92 68.60 2.05 53.73 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.34 -19.03 9.99 84.03 0.84 -18.19 16 8 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.75 -37.58 5.49 -343.47 -1.89 -39.47 16 10 C 0.17 6.75 5.70 86.38 0.49 7.24 16 11 C -0.10 -3.02 3.07 -9.40 -0.03 -3.05 16 12 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 13 C -0.12 -3.03 6.28 31.78 0.20 -2.83 16 14 C 0.11 1.99 6.49 86.73 0.56 2.56 16 15 N -0.62 -15.24 3.33 -811.68 -2.70 -17.94 16 16 C 0.52 13.26 7.85 87.66 0.69 13.95 16 17 O -0.59 -20.37 16.24 -3.04 -0.05 -20.42 16 18 C -0.12 -1.97 4.89 29.85 0.15 -1.82 16 19 C -0.09 -1.54 4.33 30.60 0.13 -1.40 16 20 C -0.11 -1.33 3.64 -10.27 -0.04 -1.37 16 21 C -0.14 -1.57 7.65 31.18 0.24 -1.33 16 22 C -0.14 -1.49 8.09 31.18 0.25 -1.24 16 23 C -0.14 -1.79 7.64 31.12 0.24 -1.56 16 24 C 0.12 3.37 6.38 86.85 0.55 3.93 16 25 H 0.25 14.98 6.77 -92.71 -0.63 14.36 16 26 H 0.36 18.46 6.46 -92.71 -0.60 17.86 16 27 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.03 1.00 8.04 -2.39 -0.02 0.98 16 29 H 0.07 1.99 7.96 -2.39 -0.02 1.97 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 31 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 36 H 0.05 1.10 7.83 -2.38 -0.02 1.08 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 0.94 7.92 -2.39 -0.02 0.92 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 1.02 8.10 -2.39 -0.02 1.01 16 44 H 0.06 2.01 8.04 -2.38 -0.02 1.99 16 45 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 Total: -1.00 -71.58 360.27 2.94 -68.64 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.48 Total: 25.91 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 4.74 Total: -10.59 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -4.29 Total: -117.27 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.73 kcal Total: -71.58 2.94 -68.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752936228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.867 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds