Wall clock time and date at job start Tue Mar 31 2020 02:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47098 * 270.00090 * 3 2 1 5 5 H 1.48500 * 109.47353 * 30.00013 * 3 2 1 6 6 H 1.48501 * 109.47458 * 150.00279 * 3 2 1 7 7 C 1.37878 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99892 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.46757 * 209.99780 * 9 7 2 11 11 C 1.46897 * 111.00219 * 289.72106 * 10 9 7 12 12 C 1.53236 * 109.34261 * 187.25800 * 11 10 9 13 13 N 1.47082 * 108.52016 * 306.17045 * 12 11 10 14 14 C 1.34777 * 120.88156 * 231.18548 * 13 12 11 15 15 O 1.21278 * 120.00003 * 175.36018 * 14 13 12 16 16 C 1.50701 * 120.00214 * 355.63601 * 14 13 12 17 17 C 1.52997 * 109.47243 * 287.72142 * 16 14 13 18 18 C 1.52996 * 109.47446 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47220 * 59.99732 * 18 17 16 20 20 C 1.53006 * 109.46969 * 300.00419 * 19 18 17 21 21 C 1.52990 * 109.47511 * 167.71860 * 16 14 13 22 22 C 1.47076 * 118.23570 * 51.45816 * 13 12 11 23 23 C 1.46892 * 111.00399 * 54.02583 * 10 9 7 24 24 H 0.96998 * 120.00188 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46639 * 89.99795 * 9 7 2 26 26 H 1.08998 * 109.47211 * 329.99967 * 9 7 2 27 27 H 1.09000 * 109.49654 * 67.29555 * 11 10 9 28 28 H 1.09000 * 109.49366 * 307.21622 * 11 10 9 29 29 H 1.08998 * 109.62965 * 186.45981 * 12 11 10 30 30 H 1.09004 * 109.62945 * 65.87747 * 12 11 10 31 31 H 1.09001 * 109.46892 * 47.71741 * 16 14 13 32 32 H 1.09000 * 109.47104 * 300.00106 * 17 16 14 33 33 H 1.09007 * 109.47131 * 59.99811 * 17 16 14 34 34 H 1.09001 * 109.47020 * 299.99801 * 18 17 16 35 35 H 1.08999 * 109.47575 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.47622 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47068 * 60.00098 * 19 18 17 38 38 H 1.09001 * 109.46964 * 299.99743 * 20 19 18 39 39 H 1.08997 * 109.46925 * 179.97438 * 20 19 18 40 40 H 1.09012 * 109.47217 * 300.00298 * 21 16 14 41 41 H 1.09001 * 109.47140 * 60.00032 * 21 16 14 42 42 H 1.09001 * 109.63005 * 68.25569 * 22 13 12 43 43 H 1.09001 * 109.62706 * 188.83605 * 22 13 12 44 44 H 1.08999 * 109.49288 * 292.70676 * 23 10 9 45 45 H 1.09005 * 109.49546 * 52.75431 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.0453 -3.5224 0.6945 11 6 3.2223 -3.9015 -0.0984 12 6 3.9211 -5.0916 0.5675 13 7 4.2009 -4.7445 1.9692 14 6 5.4360 -4.8980 2.4865 15 8 5.6697 -4.5287 3.6178 16 6 6.5281 -5.5228 1.6571 17 6 6.2649 -7.0232 1.5141 18 6 7.3733 -7.6574 0.6715 19 6 8.7234 -7.4396 1.3575 20 6 8.9866 -5.9391 1.5004 21 6 7.8779 -5.3050 2.3435 22 6 3.0958 -4.2313 2.7929 23 6 2.4309 -3.0695 2.0376 24 1 -0.4850 0.8400 0.0004 25 1 1.0690 -2.8144 -1.0257 26 1 0.2988 -2.3685 0.5158 27 1 3.9114 -3.0587 -0.1523 28 1 2.9088 -4.1803 -1.1044 29 1 4.8561 -5.3041 0.0492 30 1 3.2712 -5.9659 0.5296 31 1 6.5438 -5.0610 0.6698 32 1 6.2491 -7.4850 2.5013 33 1 5.3032 -7.1784 1.0249 34 1 7.3886 -7.1956 -0.3157 35 1 7.1861 -8.7264 0.5700 36 1 9.5132 -7.8910 0.7570 37 1 8.7081 -7.9014 2.3447 38 1 9.0019 -5.4773 0.5132 39 1 9.9482 -5.7839 1.9895 40 1 8.0654 -4.2360 2.4454 41 1 7.8621 -5.7668 3.3308 42 1 2.3682 -5.0245 2.9648 43 1 3.4850 -3.8747 3.7465 44 1 3.1310 -2.2383 1.9541 45 1 1.5435 -2.7444 2.5807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:27 Heat of formation + Delta-G solvation = -52.808648 kcal Electronic energy + Delta-G solvation = -23097.514766 eV Core-core repulsion = 19920.702175 eV Total energy + Delta-G solvation = -3176.812591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.35574 -38.14671 -37.08922 -34.44118 -32.38915 -31.56117 -30.87744 -30.25921 -28.06636 -25.45080 -23.87015 -23.06696 -22.60462 -22.09611 -20.53262 -19.70944 -18.54115 -16.99368 -16.28506 -16.02356 -15.38556 -14.86081 -14.79358 -14.38695 -14.29254 -14.15750 -13.81093 -13.66312 -13.48082 -12.88354 -12.67645 -12.38212 -12.26491 -12.08563 -11.86517 -11.42478 -11.29139 -11.19324 -11.05304 -10.96662 -10.80087 -10.67746 -10.58678 -10.50448 -10.28560 -10.24380 -9.83790 -9.61426 -9.33115 -8.53051 -8.35254 -7.25550 -6.08791 -4.18809 2.83427 3.23298 3.24267 3.31118 3.34663 4.35787 4.44170 4.52297 4.57739 4.86230 4.96231 5.02380 5.06922 5.20147 5.25241 5.29850 5.34746 5.37872 5.48162 5.50195 5.60035 5.66007 5.75836 5.84675 5.89768 5.92753 5.95796 6.00778 6.02541 6.09971 6.12504 6.19546 6.30102 6.40799 6.56438 6.82077 6.86836 7.16023 7.52017 7.67121 7.81767 7.96687 8.19598 8.27974 8.40690 8.93296 9.48591 10.95272 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.004109 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.300641 B = 6812.505042 C = 7077.958048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.177 3.823 10 N -0.541 5.541 11 C 0.044 3.956 12 C 0.110 3.890 13 N -0.605 5.605 14 C 0.516 3.484 15 O -0.551 6.551 16 C -0.106 4.106 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.099 4.099 22 C 0.112 3.888 23 C 0.058 3.942 24 H 0.263 0.737 25 H 0.018 0.982 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.380 -14.782 0.957 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.071 0.929 9 C 0.052 3.948 10 N -0.265 5.265 11 C -0.085 4.085 12 C -0.013 4.013 13 N -0.338 5.338 14 C 0.304 3.696 15 O -0.429 6.429 16 C -0.127 4.127 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.137 4.137 22 C -0.010 4.010 23 C -0.071 4.071 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.021 -14.878 1.612 19.837 hybrid contribution 0.809 1.874 -0.292 2.061 sum 13.829 -13.004 1.320 19.029 Atomic orbital electron populations 1.69911 1.05983 1.26946 1.49931 1.24952 0.94777 0.99196 0.94473 0.86660 0.79993 0.83587 0.78203 1.20550 1.21018 1.19968 1.21668 0.93212 0.92130 1.51921 0.92904 1.19906 0.94299 0.86896 0.93673 1.62572 1.18642 1.42846 1.02454 1.22277 0.93425 0.95741 0.97080 1.22008 0.99915 0.98595 0.80785 1.48194 1.09233 1.63957 1.12420 1.20622 0.83087 0.78469 0.87380 1.90648 1.81598 1.50784 1.19906 1.21332 0.94308 0.97011 1.00051 1.21527 0.99181 0.92949 1.01094 1.21526 0.94475 1.00478 0.98980 1.21562 0.97028 0.96432 1.00825 1.21570 0.98330 0.95530 1.00289 1.21352 0.91949 1.01345 0.99063 1.21969 0.87493 0.96980 0.94573 1.22220 0.99606 0.94457 0.90857 0.92684 0.96371 0.92401 0.94390 0.90587 0.90245 0.91083 0.88885 0.91482 0.91120 0.91696 0.91713 0.92099 0.91967 0.91929 0.91823 0.91570 0.91064 0.91521 0.89617 0.93635 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 12.87 55.43 0.71 -24.90 16 2 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.55 -14.82 7.40 -34.44 -0.25 -15.08 16 8 H 0.05 1.44 6.46 -52.49 -0.34 1.10 16 9 C 0.18 4.41 5.51 -4.98 -0.03 4.38 16 10 N -0.54 -11.17 4.83 -235.48 -1.14 -12.31 16 11 C 0.04 0.79 5.32 -3.70 -0.02 0.77 16 12 C 0.11 1.53 5.34 -3.60 -0.02 1.51 16 13 N -0.61 -9.60 3.00 -172.18 -0.52 -10.11 16 14 C 0.52 8.18 6.94 -10.98 -0.08 8.11 16 15 O -0.55 -10.58 15.44 5.56 0.09 -10.50 16 16 C -0.11 -1.25 1.67 -91.78 -0.15 -1.40 16 17 C -0.11 -1.07 4.95 -26.73 -0.13 -1.20 16 18 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 19 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 20 C -0.12 -1.05 5.92 -26.71 -0.16 -1.21 16 21 C -0.10 -1.13 4.58 -26.71 -0.12 -1.25 16 22 C 0.11 1.92 6.64 -3.37 -0.02 1.90 16 23 C 0.06 1.17 5.08 -3.47 -0.02 1.15 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.46 7.96 -51.93 -0.41 0.05 16 26 H 0.06 1.58 7.45 -51.93 -0.39 1.20 16 27 H 0.04 0.75 6.96 -51.93 -0.36 0.39 16 28 H 0.08 1.27 7.99 -51.93 -0.41 0.86 16 29 H 0.08 0.90 5.30 -51.93 -0.28 0.62 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.03 6.78 -51.93 -0.35 0.68 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.67 6.63 -51.92 -0.34 0.32 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.51 7.04 -51.93 -0.37 1.14 16 44 H 0.05 1.04 7.08 -51.93 -0.37 0.67 16 45 H 0.08 1.62 8.11 -51.93 -0.42 1.20 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -30.18 339.13 -10.00 -40.18 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.82 Total: -1.08 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.42 Total: -2.70 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.94 Total: -47.32 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.18 -10.00 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.629 kcal (2) G-P(sol) polarization free energy of solvation -30.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds