Wall clock time and date at job start Tue Mar 31 2020 02:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99794 * 2 1 4 4 H 1.48495 * 109.47195 * 275.30301 * 3 2 1 5 5 H 1.48504 * 109.47084 * 35.30901 * 3 2 1 6 6 H 1.48503 * 109.46780 * 155.30263 * 3 2 1 7 7 C 1.38805 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00223 * 336.36193 * 7 2 1 9 9 N 1.36937 * 120.00285 * 156.35969 * 7 2 1 10 10 C 1.46497 * 119.99715 * 321.98401 * 9 7 2 11 11 C 1.50702 * 109.46711 * 269.99195 * 10 9 7 12 12 O 1.21276 * 120.00205 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99677 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99753 * 180.02562 * 13 11 10 15 15 C 1.54270 * 110.03271 * 87.09127 * 14 13 11 16 16 C 1.54969 * 104.15666 * 95.75217 * 15 14 13 17 17 C 1.54886 * 102.77721 * 37.89083 * 16 15 14 18 18 C 1.53868 * 110.03231 * 204.31158 * 14 13 11 19 19 C 1.46499 * 120.00126 * 141.97255 * 9 7 2 20 20 C 1.54276 * 110.02837 * 62.52942 * 19 9 7 21 21 C 1.54967 * 104.15590 * 217.13465 * 20 19 9 22 22 C 1.54887 * 102.78141 * 37.88820 * 21 20 19 23 23 C 1.53868 * 110.03649 * 305.31142 * 19 9 7 24 24 H 0.97000 * 119.99923 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47050 * 149.99646 * 10 9 7 26 26 H 1.08999 * 109.47451 * 29.99362 * 10 9 7 27 27 H 0.96995 * 120.00483 * 0.02562 * 13 11 10 28 28 H 1.08999 * 110.01758 * 325.70523 * 14 13 11 29 29 H 1.08989 * 110.48828 * 214.40110 * 15 14 13 30 30 H 1.09004 * 110.48323 * 337.04685 * 15 14 13 31 31 H 1.08998 * 110.71910 * 279.57484 * 16 15 14 32 32 H 1.09004 * 110.91780 * 156.29946 * 16 15 14 33 33 H 1.08997 * 110.48956 * 203.40483 * 17 16 15 34 34 H 1.08997 * 110.60053 * 80.81439 * 17 16 15 35 35 H 1.08999 * 110.03706 * 359.95138 * 18 14 13 36 36 H 1.09002 * 110.03781 * 121.38355 * 18 14 13 37 37 H 1.08999 * 110.01999 * 183.91629 * 19 9 7 38 38 H 1.08999 * 110.48222 * 335.77732 * 20 19 9 39 39 H 1.08997 * 110.48215 * 98.42675 * 20 19 9 40 40 H 1.08997 * 110.72152 * 279.56881 * 21 20 19 41 41 H 1.09001 * 110.91929 * 156.29708 * 21 20 19 42 42 H 1.08996 * 110.48686 * 203.40351 * 22 21 20 43 43 H 1.09002 * 110.59902 * 80.81527 * 22 21 20 44 44 H 1.09004 * 110.03625 * 238.56494 * 23 19 9 45 45 H 1.09001 * 110.03198 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3856 2.1111 -1.3940 5 1 1.5082 2.6177 0.8092 6 1 3.5993 1.4104 0.5850 7 6 2.0103 -1.2021 -0.0005 8 1 1.5383 -2.0984 0.3741 9 7 3.2935 -1.2517 -0.4761 10 6 3.6722 -0.4559 -1.6463 11 6 3.4452 -1.2639 -2.8980 12 8 3.0096 -2.3931 -2.8202 13 7 3.7264 -0.7317 -4.1039 14 6 3.5052 -1.5170 -5.3207 15 6 2.0515 -1.3412 -5.8062 16 6 2.1409 -0.2202 -6.8725 17 6 3.4793 -0.5328 -7.5867 18 6 4.4128 -1.0030 -6.4520 19 6 4.2876 -2.1003 0.1855 20 6 3.8616 -3.5805 0.0970 21 6 4.2923 -4.1809 1.4592 22 6 3.9825 -3.0337 2.4526 23 6 4.3649 -1.7528 1.6825 24 1 -0.4850 0.8400 0.0004 25 1 4.7254 -0.1839 -1.5754 26 1 3.0650 0.4486 -1.6826 27 1 4.0751 0.1713 -4.1662 28 1 3.7095 -2.5700 -5.1275 29 1 1.6844 -2.2647 -6.2537 30 1 1.4084 -1.0338 -4.9815 31 1 2.1757 0.7608 -6.3988 32 1 1.3067 -0.2806 -7.5716 33 1 3.8773 0.3643 -8.0610 34 1 3.3451 -1.3250 -8.3232 35 1 5.0172 -0.1687 -6.0960 36 1 5.0576 -1.8066 -6.8078 37 1 5.2636 -1.9643 -0.2802 38 1 2.7819 -3.6597 -0.0303 39 1 4.3809 -4.0785 -0.7217 40 1 5.3570 -4.4143 1.4584 41 1 3.7042 -5.0673 1.6971 42 1 4.5899 -3.1336 3.3522 43 1 2.9229 -3.0233 2.7081 44 1 5.3786 -1.4489 1.9434 45 1 3.6630 -0.9524 1.9167 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:32 Heat of formation + Delta-G solvation = -28.612844 kcal Electronic energy + Delta-G solvation = -23324.037432 eV Core-core repulsion = 20148.274050 eV Total energy + Delta-G solvation = -3175.763383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.39483 -37.93544 -36.98057 -34.10951 -32.95199 -31.42837 -28.67624 -28.50549 -27.81794 -27.03159 -25.92963 -22.67346 -20.93199 -20.32851 -19.93301 -19.53795 -18.88383 -16.91148 -16.33649 -15.91793 -15.42469 -15.37078 -14.97138 -14.27712 -14.13367 -13.94635 -13.44023 -13.22337 -12.79530 -12.65430 -12.41558 -12.18354 -11.65007 -11.43584 -11.19471 -11.17496 -11.06866 -10.95908 -10.77810 -10.71478 -10.59482 -10.43378 -10.35770 -10.25563 -10.07529 -9.90297 -9.69749 -9.45723 -8.98960 -8.47600 -8.44194 -6.76586 -5.97151 -3.36130 3.22536 3.41316 3.46103 3.57672 3.77175 4.50087 4.60524 4.68634 4.87986 4.97431 5.29000 5.44609 5.44840 5.46832 5.51634 5.55248 5.63916 5.69567 5.72288 5.79493 5.84021 5.89499 6.00280 6.06678 6.10818 6.23156 6.27789 6.30784 6.33146 6.34709 6.43875 6.47063 6.52331 6.62040 6.66027 6.86192 7.03364 7.10276 7.22463 7.31683 8.00862 8.18902 8.48522 8.96751 9.14946 9.73478 10.12886 11.18600 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.005954 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.540373 B = 4701.271048 C = 5666.668378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.033 3.967 3 Si 0.863 3.137 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.246 4.246 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.116 3.884 11 C 0.485 3.515 12 O -0.515 6.515 13 N -0.742 5.742 14 C 0.142 3.858 15 C -0.135 4.135 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.130 4.130 19 C 0.177 3.823 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.132 4.132 24 H 0.262 0.738 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.390 0.610 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.409 -0.254 -9.214 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.167 4.167 3 Si 0.693 3.307 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.292 5.292 10 C -0.014 4.014 11 C 0.269 3.731 12 O -0.388 6.388 13 N -0.398 5.398 14 C 0.036 3.964 15 C -0.174 4.174 16 C -0.163 4.163 17 C -0.161 4.161 18 C -0.168 4.168 19 C 0.071 3.929 20 C -0.165 4.165 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.224 0.776 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.920 -1.021 -9.064 13.476 hybrid contribution 0.445 1.498 -0.234 1.580 sum 10.365 0.477 -9.299 13.933 Atomic orbital electron populations 1.69912 1.05941 1.26472 1.51212 1.25482 0.95032 0.97417 0.98750 0.87135 0.81201 0.85474 0.76933 1.21611 1.22717 1.18954 1.18612 0.87006 0.94269 1.37558 0.90171 1.43899 1.08846 1.51120 1.25383 1.21382 0.99331 0.95023 0.85669 1.22849 0.76577 0.88646 0.85008 1.90607 1.42330 1.19223 1.86663 1.46571 1.69245 1.18091 1.05863 1.21419 0.93968 0.96656 0.84332 1.22800 0.97273 0.98515 0.98792 1.22520 0.96941 0.99125 0.97667 1.22355 0.95685 1.00698 0.97359 1.22453 0.97928 1.01011 0.95382 1.21043 0.90431 0.90201 0.91247 1.22734 1.02783 0.96343 0.94618 1.22470 0.99517 0.97504 0.96777 1.22237 1.01102 0.95218 0.96853 1.22517 0.99862 0.98458 0.96277 0.92830 0.91585 0.90234 0.77642 0.89839 0.91363 0.90713 0.91604 0.91793 0.91837 0.91648 0.91269 0.91249 0.93368 0.90150 0.93371 0.92850 0.92749 0.93323 0.91580 0.93732 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.97 55.49 0.78 -26.36 16 2 C 0.03 0.94 5.28 -17.43 -0.09 0.85 16 3 Si 0.86 21.03 25.17 -169.99 -4.28 16.75 16 4 H -0.29 -6.69 6.65 56.52 0.38 -6.32 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.25 -6.74 8.20 -15.06 -0.12 -6.87 16 8 H 0.08 2.45 7.09 -52.49 -0.37 2.08 16 9 N -0.57 -13.44 1.51 -165.75 -0.25 -13.69 16 10 C 0.12 2.45 4.99 -5.19 -0.03 2.43 16 11 C 0.48 9.99 7.89 -10.98 -0.09 9.90 16 12 O -0.52 -12.57 16.10 5.56 0.09 -12.48 16 13 N -0.74 -11.85 5.04 -52.72 -0.27 -12.11 16 14 C 0.14 2.03 3.23 -66.81 -0.22 1.82 16 15 C -0.13 -1.95 6.54 -25.03 -0.16 -2.12 16 16 C -0.12 -1.44 6.91 -24.70 -0.17 -1.61 16 17 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 18 C -0.13 -1.37 6.57 -25.61 -0.17 -1.54 16 19 C 0.18 3.62 3.42 -66.81 -0.23 3.40 16 20 C -0.13 -2.51 6.43 -25.02 -0.16 -2.67 16 21 C -0.12 -2.08 6.91 -24.70 -0.17 -2.25 16 22 C -0.12 -2.01 6.83 -25.07 -0.17 -2.18 16 23 C -0.13 -2.52 6.24 -25.61 -0.16 -2.68 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 25 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 26 H 0.08 1.79 3.43 -51.93 -0.18 1.61 16 27 H 0.39 5.18 8.31 -40.82 -0.34 4.84 16 28 H 0.08 1.35 7.59 -51.93 -0.39 0.96 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.68 7.61 -51.93 -0.40 0.28 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 38 H 0.08 1.89 6.64 -51.93 -0.34 1.55 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.79 7.17 -51.93 -0.37 1.42 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -31.62 346.51 -8.68 -40.30 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.86 Total: 7.26 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.11 Total: -4.89 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.26 Total: -52.17 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.28 Total: 16.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.62 -8.68 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.684 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds