Wall clock time and date at job start Tue Mar 31 2020 03:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 N 1.46497 * 109.57360 * 182.41051 * 14 13 12 16 16 C 1.45754 * 117.94325 * 239.44746 * 15 14 13 17 17 C 1.53103 * 110.38552 * 160.74795 * 16 15 14 18 18 C 1.53347 * 108.53098 * 51.11369 * 17 16 15 19 19 C 1.53071 * 108.42371 * 292.31464 * 18 17 16 20 20 C 1.33356 * 117.95075 * 59.71680 * 15 14 13 21 21 O 1.21283 * 118.24231 * 2.23662 * 20 15 14 22 22 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 23 23 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 30 30 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 31 31 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 32 32 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 33 33 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 34 34 H 1.09001 * 109.30191 * 281.23543 * 16 15 14 35 35 H 1.08994 * 109.30161 * 40.61664 * 16 15 14 36 36 H 1.09003 * 109.80671 * 291.32853 * 17 16 15 37 37 H 1.08994 * 109.68029 * 170.82819 * 17 16 15 38 38 H 1.08998 * 109.67580 * 172.58073 * 18 17 16 39 39 H 1.08998 * 109.70083 * 52.06106 * 18 17 16 40 40 H 1.09002 * 109.39730 * 288.76521 * 19 18 17 41 41 H 1.09001 * 109.33290 * 168.98593 * 19 18 17 42 42 H 1.09005 * 109.50073 * 297.71107 * 22 14 13 43 43 H 1.08991 * 109.50379 * 177.59621 * 22 14 13 44 44 H 1.08989 * 109.46428 * 305.85572 * 23 11 10 45 45 H 1.09002 * 109.45912 * 65.83533 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7605 -5.1093 1.2489 13 6 -0.1037 -6.3687 1.1546 14 6 0.7964 -7.5818 0.9037 15 7 -0.0291 -8.7829 0.7550 16 6 0.1890 -9.8813 1.6879 17 6 -1.0249 -10.8141 1.7068 18 6 -1.3664 -11.1988 0.2621 19 6 -1.8717 -9.9500 -0.4646 20 6 -0.9290 -8.8050 -0.2289 21 8 -0.9892 -7.8494 -0.9732 22 6 1.6025 -7.3529 -0.3779 23 6 2.4172 -6.0650 -0.2392 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 1.4582 -5.2089 2.0805 30 1 0.1214 -4.2418 1.4133 31 1 -0.8110 -6.2639 0.3319 32 1 -0.6487 -6.5069 2.0884 33 1 1.4778 -7.7099 1.7446 34 1 1.0735 -10.4415 1.3846 35 1 0.3471 -9.4784 2.6882 36 1 -1.8752 -10.3045 2.1601 37 1 -0.7893 -11.7117 2.2783 38 1 -2.1426 -11.9640 0.2598 39 1 -0.4751 -11.5786 -0.2374 40 1 -2.8608 -9.6879 -0.0889 41 1 -1.9329 -10.1544 -1.5335 42 1 0.9220 -7.2637 -1.2248 43 1 2.2764 -8.1942 -0.5390 44 1 2.9813 -5.8916 -1.1555 45 1 3.1070 -6.1603 0.5994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120512144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:42 Heat of formation + Delta-G solvation = -42.144048 kcal Electronic energy + Delta-G solvation = -22798.038603 eV Core-core repulsion = 19621.688463 eV Total energy + Delta-G solvation = -3176.350140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89864 -38.16086 -36.55353 -34.88363 -33.08871 -31.48143 -30.52110 -29.80785 -28.66654 -25.23046 -24.40257 -23.34345 -22.91234 -21.97734 -20.19518 -19.51668 -18.54341 -16.90249 -16.46928 -16.03705 -15.78918 -14.76796 -14.68336 -14.52232 -14.37293 -14.22550 -13.98402 -13.72569 -13.41374 -13.18423 -12.87052 -12.55545 -12.17313 -12.01455 -11.70680 -11.68618 -11.35185 -11.32389 -11.18028 -11.06137 -10.85279 -10.67838 -10.54890 -10.37298 -10.17933 -9.74561 -9.31833 -9.20601 -9.04190 -8.62541 -8.25917 -7.54808 -5.92670 -3.94935 2.67513 2.91327 3.36389 3.42129 3.45262 4.34279 4.39371 4.41370 4.45498 4.51748 4.64143 4.97361 5.01790 5.09402 5.18598 5.21321 5.29227 5.38704 5.42810 5.47170 5.55519 5.58643 5.60505 5.70911 5.72950 5.82711 5.86823 5.98591 6.07324 6.20091 6.30669 6.36410 6.58588 6.62744 6.65589 6.85478 7.07217 7.48957 7.65170 7.71810 7.90500 8.00575 8.18681 8.24725 8.51526 9.12640 9.68108 11.18706 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040008 B = 0.003255 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.688320 B = 8601.086511 C = 8796.808135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.535 5.535 12 C 0.062 3.938 13 C -0.131 4.131 14 C 0.147 3.853 15 N -0.602 5.602 16 C 0.113 3.887 17 C -0.136 4.136 18 C -0.123 4.123 19 C -0.136 4.136 20 C 0.510 3.490 21 O -0.530 6.530 22 C -0.132 4.132 23 C 0.062 3.938 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.016 0.984 27 H 0.060 0.940 28 H 0.017 0.983 29 H 0.021 0.979 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 -25.691 4.576 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.259 5.259 12 C -0.066 4.066 13 C -0.170 4.170 14 C 0.045 3.955 15 N -0.336 5.336 16 C -0.010 4.010 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.176 4.176 20 C 0.298 3.702 21 O -0.407 6.407 22 C -0.170 4.170 23 C -0.067 4.067 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.683 -25.089 3.807 25.431 hybrid contribution 1.117 0.814 0.850 1.623 sum -0.566 -24.275 4.657 24.724 Atomic orbital electron populations 1.69976 1.05996 1.26481 1.50742 1.24996 0.94822 0.99124 0.95424 0.86607 0.79773 0.83586 0.78081 1.20662 1.21272 1.19984 1.21208 0.92944 0.91131 1.50697 0.92858 1.19099 0.93989 0.90049 0.97825 1.22313 0.96683 0.88519 0.98758 1.61970 1.27269 1.02220 1.34463 1.22010 0.96610 0.98046 0.89979 1.22021 0.99228 0.93174 1.02528 1.21207 0.91929 0.84191 0.98214 1.47469 1.37512 1.17191 1.31382 1.21428 0.98065 0.88121 0.93368 1.21911 0.98280 0.99667 0.97508 1.21653 1.01921 0.97193 0.95319 1.21687 0.99258 0.93395 1.03211 1.20091 0.81095 0.88795 0.80215 1.90741 1.69444 1.35736 1.44820 1.22036 0.98934 0.96342 0.99699 1.21966 0.93751 0.90970 1.00042 0.93048 0.95636 0.96526 0.92168 0.96444 0.96088 0.89332 0.88449 0.92544 0.90545 0.91906 0.90827 0.90855 0.89955 0.90727 0.91203 0.88495 0.88390 0.88137 0.92754 0.90991 0.96105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.76 4.90 -27.88 -0.14 0.62 16 10 C 0.06 1.44 4.90 -3.82 -0.02 1.42 16 11 N -0.53 -10.66 4.66 -234.67 -1.09 -11.75 16 12 C 0.06 1.14 5.29 -3.84 -0.02 1.12 16 13 C -0.13 -2.09 5.29 -26.65 -0.14 -2.23 16 14 C 0.15 1.97 2.55 -67.80 -0.17 1.80 16 15 N -0.60 -6.76 2.79 -167.12 -0.47 -7.22 16 16 C 0.11 0.83 6.26 -4.39 -0.03 0.80 16 17 C -0.14 -0.75 6.03 -26.50 -0.16 -0.91 16 18 C -0.12 -0.72 6.03 -26.51 -0.16 -0.88 16 19 C -0.14 -1.16 6.03 -28.10 -0.17 -1.33 16 20 C 0.51 6.50 6.88 -11.87 -0.08 6.41 16 21 O -0.53 -9.21 12.44 5.56 0.07 -9.14 16 22 C -0.13 -1.95 5.29 -26.65 -0.14 -2.09 16 23 C 0.06 1.01 5.46 -3.83 -0.02 0.99 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 27 H 0.06 1.34 7.99 -51.93 -0.41 0.92 16 28 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 1.84 6.21 -51.93 -0.32 1.51 16 31 H 0.10 1.85 5.94 -51.93 -0.31 1.54 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.90 7.79 -51.93 -0.40 0.50 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.48 8.03 -51.93 -0.42 0.07 16 36 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.79 5.80 -51.93 -0.30 1.49 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.16 8.01 -51.94 -0.42 0.74 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 341.56 15.07 5.15 5.15 Total: -1.00 -33.60 341.56 -10.24 -43.85 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.95 Total: -2.89 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.66 Total: -8.24 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.82 Total: -45.90 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.60 -10.24 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120512144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.702 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds