Wall clock time and date at job start Tue Mar 31 2020 03:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 N 1.46497 * 109.57360 * 182.41051 * 14 13 12 16 16 C 1.45754 * 117.94325 * 239.44746 * 15 14 13 17 17 C 1.53103 * 110.38552 * 160.74795 * 16 15 14 18 18 C 1.53347 * 108.53098 * 51.11369 * 17 16 15 19 19 C 1.53071 * 108.42371 * 292.31464 * 18 17 16 20 20 C 1.33356 * 117.95075 * 59.71680 * 15 14 13 21 21 O 1.21283 * 118.24231 * 2.23662 * 20 15 14 22 22 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 23 23 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 30 30 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 31 31 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 32 32 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 33 33 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 34 34 H 1.09001 * 109.30191 * 281.23543 * 16 15 14 35 35 H 1.08994 * 109.30161 * 40.61664 * 16 15 14 36 36 H 1.09003 * 109.80671 * 291.32853 * 17 16 15 37 37 H 1.08994 * 109.68029 * 170.82819 * 17 16 15 38 38 H 1.08998 * 109.67580 * 172.58073 * 18 17 16 39 39 H 1.08998 * 109.70083 * 52.06106 * 18 17 16 40 40 H 1.09002 * 109.39730 * 288.76521 * 19 18 17 41 41 H 1.09001 * 109.33290 * 168.98593 * 19 18 17 42 42 H 1.09005 * 109.50073 * 297.71107 * 22 14 13 43 43 H 1.08991 * 109.50379 * 177.59621 * 22 14 13 44 44 H 1.08989 * 109.46428 * 305.85572 * 23 11 10 45 45 H 1.09002 * 109.45912 * 65.83533 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7605 -5.1093 1.2489 13 6 -0.1037 -6.3687 1.1546 14 6 0.7964 -7.5818 0.9037 15 7 -0.0291 -8.7829 0.7550 16 6 0.1890 -9.8813 1.6879 17 6 -1.0249 -10.8141 1.7068 18 6 -1.3664 -11.1988 0.2621 19 6 -1.8717 -9.9500 -0.4646 20 6 -0.9290 -8.8050 -0.2289 21 8 -0.9892 -7.8494 -0.9732 22 6 1.6025 -7.3529 -0.3779 23 6 2.4172 -6.0650 -0.2392 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 1.4582 -5.2089 2.0805 30 1 0.1214 -4.2418 1.4133 31 1 -0.8110 -6.2639 0.3319 32 1 -0.6487 -6.5069 2.0884 33 1 1.4778 -7.7099 1.7446 34 1 1.0735 -10.4415 1.3846 35 1 0.3471 -9.4784 2.6882 36 1 -1.8752 -10.3045 2.1601 37 1 -0.7893 -11.7117 2.2783 38 1 -2.1426 -11.9640 0.2598 39 1 -0.4751 -11.5786 -0.2374 40 1 -2.8608 -9.6879 -0.0889 41 1 -1.9329 -10.1544 -1.5335 42 1 0.9220 -7.2637 -1.2248 43 1 2.2764 -8.1942 -0.5390 44 1 2.9813 -5.8916 -1.1555 45 1 3.1070 -6.1603 0.5994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120512144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:41 Heat of formation + Delta-G solvation = -64.350239 kcal Electronic energy + Delta-G solvation = -22799.001535 eV Core-core repulsion = 19621.688463 eV Total energy + Delta-G solvation = -3177.313072 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.86584 -39.53550 -37.40442 -36.19903 -34.96755 -32.93743 -31.87319 -30.70695 -30.25829 -26.81649 -25.34835 -24.75098 -24.21246 -22.98433 -21.92067 -20.82665 -19.36210 -18.61611 -17.74997 -17.19797 -16.71167 -16.51181 -16.17940 -15.94699 -15.38190 -15.16664 -15.12533 -14.76917 -14.49499 -14.30105 -14.22929 -14.09875 -13.93416 -13.18900 -13.08887 -12.88086 -12.77868 -12.64280 -12.44232 -12.24162 -12.04631 -11.93303 -11.80591 -11.78025 -11.60879 -11.41438 -11.23560 -11.13334 -10.55083 -10.31028 -9.58482 -9.10999 -8.20520 -6.32918 1.38669 1.41452 1.52280 1.72400 2.05764 2.39526 3.06978 3.12229 3.58732 3.83453 3.86749 3.92097 3.95998 3.98225 4.15441 4.21944 4.35866 4.40362 4.51613 4.52357 4.56157 4.58618 4.62081 4.69700 4.73824 4.86487 4.93853 4.96578 4.99772 5.02537 5.07303 5.11827 5.16960 5.30380 5.34166 5.40041 5.45138 5.64602 5.71352 5.78322 6.11022 6.33894 6.37419 6.62793 6.84536 7.31500 7.36234 8.91966 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040008 B = 0.003255 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.688320 B = 8601.086511 C = 8796.808135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.081 3.919 11 N -0.557 5.557 12 C 0.065 3.935 13 C -0.121 4.121 14 C 0.151 3.849 15 N -0.597 5.597 16 C 0.104 3.896 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.132 4.132 20 C 0.499 3.501 21 O -0.588 6.588 22 C -0.123 4.123 23 C 0.062 3.938 24 H 0.264 0.736 25 H -0.016 1.016 26 H -0.007 1.007 27 H 0.062 0.938 28 H 0.025 0.975 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.548 -27.814 6.076 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.001 4.001 10 C -0.046 4.046 11 N -0.282 5.282 12 C -0.063 4.063 13 C -0.160 4.160 14 C 0.048 3.952 15 N -0.329 5.329 16 C -0.017 4.017 17 C -0.169 4.169 18 C -0.154 4.154 19 C -0.172 4.172 20 C 0.289 3.711 21 O -0.469 6.469 22 C -0.162 4.162 23 C -0.066 4.066 24 H 0.072 0.928 25 H 0.002 0.998 26 H 0.012 0.988 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.029 -27.273 5.336 27.790 hybrid contribution 0.530 1.433 0.380 1.575 sum 0.559 -25.839 5.715 26.470 Atomic orbital electron populations 1.70134 1.07996 1.27808 1.51423 1.26041 0.95780 1.03577 0.94572 0.85366 0.78627 0.78004 0.78526 1.19776 1.20615 1.18446 1.21631 0.93568 0.92158 1.50941 0.91944 1.18918 0.94210 0.92251 0.94688 1.21945 0.95269 0.88318 0.99089 1.61859 1.28273 1.02407 1.35669 1.21931 0.96551 0.97856 0.89975 1.21872 0.98725 0.93544 1.01870 1.21075 0.91750 0.84073 0.98333 1.47544 1.36435 1.17383 1.31511 1.21786 0.99708 0.87309 0.92940 1.21931 0.97267 1.00232 0.97452 1.21656 1.02649 0.95934 0.95149 1.21706 0.98461 0.93257 1.03747 1.20892 0.81414 0.89079 0.79682 1.90734 1.71121 1.38076 1.47009 1.21923 0.98656 0.96317 0.99296 1.22038 0.93646 0.90109 1.00805 0.92759 0.99767 0.98840 0.91987 0.95701 0.94252 0.93082 0.92096 0.90911 0.87691 0.90214 0.89541 0.91302 0.87136 0.88570 0.90883 0.87918 0.88560 0.91545 0.90051 0.91012 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.71 13.29 21.45 0.28 -59.43 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.54 -32.66 9.11 25.60 0.23 -32.42 16 8 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.04 2.12 4.90 29.85 0.15 2.27 16 10 C 0.08 3.75 4.90 86.31 0.42 4.17 16 11 N -0.56 -22.85 4.66 -896.37 -4.17 -27.03 16 12 C 0.07 2.47 5.29 86.32 0.46 2.93 16 13 C -0.12 -3.94 5.29 30.65 0.16 -3.78 16 14 C 0.15 3.82 2.55 45.08 0.11 3.94 16 15 N -0.60 -12.38 2.79 -801.84 -2.24 -14.62 16 16 C 0.10 1.15 6.26 86.55 0.54 1.69 16 17 C -0.13 -0.95 6.03 30.74 0.19 -0.77 16 18 C -0.12 -1.00 6.03 30.73 0.19 -0.81 16 19 C -0.13 -2.13 6.03 29.70 0.18 -1.95 16 20 C 0.50 12.68 6.88 87.71 0.60 13.28 16 21 O -0.59 -21.60 12.44 -3.04 -0.04 -21.63 16 22 C -0.12 -3.55 5.29 30.65 0.16 -3.38 16 23 C 0.06 1.99 5.46 86.32 0.47 2.46 16 24 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 25 H -0.02 -1.05 8.14 -2.39 -0.02 -1.06 16 26 H -0.01 -0.41 6.43 -2.39 -0.02 -0.43 16 27 H 0.06 2.80 7.99 -2.39 -0.02 2.78 16 28 H 0.02 1.10 8.12 -2.39 -0.02 1.08 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 2.28 6.21 -2.39 -0.01 2.26 16 31 H 0.06 2.47 5.94 -2.39 -0.01 2.45 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.11 2.10 7.79 -2.39 -0.02 2.09 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.78 8.03 -2.39 -0.02 0.76 16 36 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 37 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 2.44 5.80 -2.38 -0.01 2.43 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 2.27 8.01 -2.39 -0.02 2.25 16 45 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -77.75 341.56 1.13 -76.62 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.94 Total: 10.27 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 4.33 Total: -12.05 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -6.13 Total: -101.08 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.63 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -77.75 1.13 -76.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120512144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.269 kcal (2) G-P(sol) polarization free energy of solvation -77.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds