Wall clock time and date at job start Tue Mar 31 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48501 * 109.47114 * 275.48435 * 3 2 1 5 5 H 1.48502 * 109.46819 * 35.48042 * 3 2 1 6 6 H 1.48495 * 109.47032 * 155.48299 * 3 2 1 7 7 C 1.37878 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99647 * 359.54711 * 7 2 1 9 9 C 1.50696 * 120.00060 * 179.54481 * 7 2 1 10 10 H 1.09007 * 109.52292 * 331.99156 * 9 7 2 11 11 C 1.53035 * 109.50118 * 211.90640 * 9 7 2 12 12 C 1.53034 * 109.54142 * 178.68292 * 11 9 7 13 13 C 1.53198 * 109.31295 * 61.36486 * 12 11 9 14 14 N 1.46930 * 108.77116 * 305.36437 * 13 12 11 15 15 C 1.34774 * 120.62996 * 233.62809 * 14 13 12 16 16 O 1.21589 * 119.99726 * 208.58603 * 15 14 13 17 17 N 1.34777 * 120.00210 * 28.57796 * 15 14 13 18 18 C 1.44579 * 118.63871 * 353.06242 * 17 15 14 19 19 C 1.54314 * 109.90666 * 270.84724 * 18 17 15 20 20 C 1.47096 * 110.29398 * 288.76219 * 19 18 17 21 21 C 1.52563 * 114.32780 * 62.73044 * 20 19 18 22 22 C 1.50880 * 109.35588 * 274.97901 * 21 20 19 23 23 C 1.47603 * 118.64380 * 173.32224 * 17 15 14 24 24 C 1.46930 * 118.73913 * 53.61192 * 14 13 12 25 25 H 0.96999 * 120.00230 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46128 * 58.65955 * 11 9 7 27 27 H 1.09002 * 109.45838 * 298.70710 * 11 9 7 28 28 H 1.09003 * 109.49939 * 301.41452 * 12 11 9 29 29 H 1.08998 * 109.50168 * 181.31306 * 12 11 9 30 30 H 1.08994 * 109.58308 * 65.15362 * 13 12 11 31 31 H 1.09000 * 109.58752 * 185.57715 * 13 12 11 32 32 H 1.08997 * 109.45470 * 30.75360 * 18 17 15 33 33 H 1.09007 * 109.44734 * 150.68168 * 18 17 15 34 34 H 1.08999 * 109.40090 * 168.47291 * 19 18 17 35 35 H 1.08997 * 109.14163 * 48.88599 * 19 18 17 36 36 H 1.08999 * 108.51305 * 301.47538 * 20 19 18 37 37 H 1.08998 * 108.38860 * 183.89695 * 20 19 18 38 38 H 1.09005 * 109.49539 * 155.01544 * 21 20 19 39 39 H 1.09001 * 109.51343 * 34.95784 * 21 20 19 40 40 H 1.08993 * 109.36965 * 331.69614 * 22 21 20 41 41 H 1.09000 * 109.26559 * 212.00713 * 22 21 20 42 42 H 1.09005 * 108.94694 * 258.55528 * 23 17 15 43 43 H 1.08997 * 108.95021 * 17.26924 * 23 17 15 44 44 H 1.08998 * 109.58591 * 186.59876 * 24 14 13 45 45 H 1.09003 * 109.58327 * 66.17328 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3808 2.1133 -1.3937 5 1 1.5093 2.6164 0.8127 6 1 3.5998 1.4095 0.5810 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 0.0064 9 6 3.5115 -1.1941 -0.0109 10 1 3.8725 -0.2887 -0.4991 11 6 4.0171 -2.4214 -0.7725 12 6 5.5469 -2.4050 -0.8119 13 6 6.0912 -2.4658 0.6188 14 7 5.4958 -1.3716 1.3981 15 6 6.2770 -0.5041 2.0716 16 8 5.8586 0.0364 3.0771 17 7 7.5220 -0.2358 1.6305 18 6 8.0458 -1.0047 0.5238 19 6 8.7573 -2.2681 1.0518 20 6 10.0192 -1.9038 1.7141 21 6 9.8500 -1.0206 2.9465 22 6 9.7664 0.4239 2.5189 23 6 8.2965 0.8267 2.3011 24 6 4.0327 -1.2410 1.4289 25 1 -0.4850 0.8400 0.0004 26 1 3.6275 -2.4031 -1.7904 27 1 3.6764 -3.3265 -0.2697 28 1 5.8887 -1.4883 -1.2925 29 1 5.9056 -3.2669 -1.3744 30 1 5.8265 -3.4220 1.0701 31 1 7.1754 -2.3548 0.6023 32 1 7.2270 -1.3021 -0.1313 33 1 8.7561 -0.3966 -0.0366 34 1 8.9674 -2.9398 0.2195 35 1 8.1070 -2.7720 1.7668 36 1 10.6481 -1.3783 0.9954 37 1 10.5281 -2.8204 2.0124 38 1 10.7044 -1.1544 3.6101 39 1 8.9355 -1.2982 3.4707 40 1 10.3195 0.5584 1.5894 41 1 10.2028 1.0543 3.2937 42 1 8.2636 1.7284 1.6895 43 1 7.8419 1.0392 3.2687 44 1 3.7587 -0.3220 1.9469 45 1 3.6002 -2.0974 1.9463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397808439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:49 Heat of formation + Delta-G solvation = 30.695107 kcal Electronic energy + Delta-G solvation = -24185.954456 eV Core-core repulsion = 21012.762859 eV Total energy + Delta-G solvation = -3173.191597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19774 -37.88646 -37.17338 -34.35440 -33.40390 -32.49093 -31.73606 -30.28071 -27.37572 -25.71246 -24.86188 -24.14489 -22.05596 -21.68419 -20.46768 -19.68905 -18.29175 -17.25345 -16.69176 -16.63934 -15.80579 -15.02538 -14.78701 -14.60104 -14.27054 -14.08394 -13.97327 -13.50140 -13.07703 -12.85720 -12.75403 -12.56104 -12.32317 -12.23614 -11.99989 -11.47092 -11.17195 -11.02256 -10.91848 -10.79487 -10.68846 -10.63606 -10.45697 -10.34212 -9.94461 -9.68908 -9.57929 -9.22812 -9.00023 -8.62328 -8.49325 -7.78296 -6.10069 -4.10533 2.94955 3.29689 3.40567 3.45297 3.48400 4.07704 4.42700 4.47777 4.56809 4.64978 4.79591 4.95509 5.14836 5.20879 5.27281 5.36505 5.41088 5.45371 5.52458 5.59082 5.65720 5.67777 5.79130 5.88006 5.92427 5.98138 6.00280 6.06238 6.08340 6.19011 6.22216 6.32096 6.46996 6.65000 6.68400 6.78446 6.83771 7.06986 7.25173 7.34883 7.45145 7.77501 8.32992 8.50567 8.93509 8.97755 9.53237 11.02631 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025116 B = 0.005840 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.553595 B = 4793.332240 C = 5422.265872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.512 4.512 8 H 0.075 0.925 9 C 0.005 3.995 10 H 0.033 0.967 11 C -0.101 4.101 12 C -0.141 4.141 13 C 0.036 3.964 14 N -0.632 5.632 15 C 0.705 3.295 16 O -0.589 6.589 17 N -0.621 5.621 18 C 0.074 3.926 19 C -0.152 4.152 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.130 4.130 23 C 0.126 3.874 24 C 0.137 3.863 25 H 0.264 0.736 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.179 -3.434 0.192 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.550 4.550 8 H 0.093 0.907 9 C -0.015 4.015 10 H 0.051 0.949 11 C -0.139 4.139 12 C -0.179 4.179 13 C -0.086 4.086 14 N -0.369 5.369 15 C 0.409 3.591 16 O -0.467 6.467 17 N -0.359 5.359 18 C -0.049 4.049 19 C -0.190 4.190 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.168 4.168 23 C 0.003 3.997 24 C 0.015 3.985 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.760 -2.997 0.761 21.978 hybrid contribution 0.288 0.844 -0.082 0.896 sum 22.047 -2.152 0.678 22.162 Atomic orbital electron populations 1.69899 1.06315 1.27045 1.50134 1.25064 0.94683 0.99000 0.94024 0.86914 0.81022 0.83899 0.78181 1.20533 1.21322 1.18387 1.20920 0.88298 0.94551 1.51241 0.90674 1.19519 0.96543 0.94433 0.91031 0.94927 1.21506 0.91751 0.99783 1.00846 1.22074 0.98992 1.01009 0.95845 1.23670 1.03006 0.90046 0.91866 1.47475 1.07602 1.29590 1.52261 1.16102 0.80384 0.80039 0.82597 1.90846 1.73711 1.57544 1.24591 1.46970 1.15012 1.38754 1.35151 1.22465 1.00279 0.92161 0.90031 1.21426 0.97762 0.98383 1.01461 1.20427 0.97440 0.99859 0.97381 1.21059 1.02154 0.94698 0.97555 1.21785 0.96170 0.97206 1.01661 1.21666 0.90723 0.88386 0.98905 1.22288 0.74181 1.01600 1.00381 0.92584 0.92354 0.92807 0.92160 0.91864 0.92713 0.84047 0.86451 0.91058 0.90184 0.90684 0.92237 0.92469 0.92103 0.91410 0.91764 0.90885 0.92485 0.89172 0.90907 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 22.25 26.63 -169.99 -4.53 17.73 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.62 5.95 56.52 0.34 -6.29 16 7 C -0.51 -14.16 8.87 -34.44 -0.31 -14.46 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.00 0.11 1.78 -91.66 -0.16 -0.06 16 10 H 0.03 0.79 5.53 -51.93 -0.29 0.50 16 11 C -0.10 -1.92 5.15 -26.70 -0.14 -2.06 16 12 C -0.14 -2.07 5.55 -26.61 -0.15 -2.21 16 13 C 0.04 0.52 4.64 -3.71 -0.02 0.50 16 14 N -0.63 -12.09 2.89 -179.27 -0.52 -12.60 16 15 C 0.71 13.78 7.83 -86.92 -0.68 13.10 16 16 O -0.59 -13.76 15.48 5.29 0.08 -13.67 16 17 N -0.62 -9.20 2.25 -218.37 -0.49 -9.70 16 18 C 0.07 0.85 4.86 -4.38 -0.02 0.83 16 19 C -0.15 -1.39 4.14 -28.88 -0.12 -1.51 16 20 C -0.11 -0.94 5.15 -29.79 -0.15 -1.10 16 21 C -0.12 -1.11 5.51 -28.02 -0.15 -1.27 16 22 C -0.13 -1.20 5.71 -27.30 -0.16 -1.36 16 23 C 0.13 1.62 6.14 -2.94 -0.02 1.60 16 24 C 0.14 3.10 5.40 -3.71 -0.02 3.08 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.88 7.12 -51.93 -0.37 0.51 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.14 1.68 0.86 -135.23 -0.12 1.56 16 32 H 0.12 1.45 2.87 -52.94 -0.15 1.30 16 33 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.82 6.81 -51.93 -0.35 0.46 16 36 H 0.06 0.44 7.36 -51.93 -0.38 0.06 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.82 7.48 -51.93 -0.39 0.44 16 40 H 0.06 0.52 7.32 -51.93 -0.38 0.14 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.34 6.90 -51.93 -0.36 0.98 16 44 H 0.07 1.86 6.34 -51.93 -0.33 1.53 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -32.97 322.00 -9.41 -42.38 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.39 Total: 0.53 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.19 Total: -2.86 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.24 Total: -48.95 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.53 Total: 17.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.97 -9.41 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397808439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.071 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds