Wall clock time and date at job start Tue Mar 31 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00050 * 2 1 4 4 H 1.48496 * 109.47153 * 272.90032 * 3 2 1 5 5 H 1.48508 * 109.46758 * 32.90146 * 3 2 1 6 6 H 1.48498 * 109.47178 * 152.89426 * 3 2 1 7 7 C 1.38819 * 120.00621 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99171 * 339.37042 * 7 2 1 9 9 N 1.36934 * 120.00294 * 159.36007 * 7 2 1 10 10 C 1.46918 * 120.63305 * 332.61135 * 9 7 2 11 11 C 1.53192 * 108.77563 * 233.62994 * 10 9 7 12 12 C 1.53108 * 109.32671 * 305.35930 * 11 10 9 13 13 C 1.53047 * 109.50288 * 61.34584 * 12 11 10 14 14 H 1.08997 * 109.49775 * 58.61750 * 13 12 11 15 15 N 1.46497 * 109.49727 * 178.68123 * 13 12 11 16 16 C 1.34778 * 119.99821 * 204.92904 * 15 13 12 17 17 O 1.21278 * 120.00136 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00014 * 180.02562 * 16 15 13 19 19 C 1.52994 * 109.47392 * 180.02562 * 18 16 15 20 20 C 1.54269 * 110.03216 * 292.90964 * 19 18 16 21 21 C 1.54965 * 104.16157 * 217.13391 * 20 19 18 22 22 C 1.54896 * 102.77453 * 37.88609 * 21 20 19 23 23 C 1.53879 * 110.03533 * 175.69032 * 19 18 16 24 24 C 1.46924 * 120.62869 * 152.62562 * 9 7 2 25 25 H 0.96991 * 120.00272 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.58543 * 353.41004 * 10 9 7 27 27 H 1.08996 * 109.59212 * 113.69365 * 10 9 7 28 28 H 1.08993 * 109.50223 * 65.31249 * 11 10 9 29 29 H 1.09003 * 109.50283 * 185.38216 * 11 10 9 30 30 H 1.08994 * 109.45422 * 301.35217 * 12 11 10 31 31 H 1.09006 * 109.50497 * 181.36727 * 12 11 10 32 32 H 0.97001 * 120.00125 * 24.94084 * 15 13 12 33 33 H 1.09008 * 109.47177 * 300.00815 * 18 16 15 34 34 H 1.09002 * 109.47238 * 60.00193 * 18 16 15 35 35 H 1.09000 * 110.01646 * 54.29823 * 19 18 16 36 36 H 1.08996 * 110.48488 * 335.78158 * 20 19 18 37 37 H 1.09001 * 110.48317 * 98.42618 * 20 19 18 38 38 H 1.09001 * 110.71964 * 279.57750 * 21 20 19 39 39 H 1.08998 * 110.76389 * 156.22127 * 21 20 19 40 40 H 1.09005 * 110.48291 * 203.40116 * 22 21 20 41 41 H 1.09002 * 110.48087 * 80.76382 * 22 21 20 42 42 H 1.08995 * 110.03047 * 238.56642 * 23 19 18 43 43 H 1.09000 * 110.03216 * 0.02562 * 23 19 18 44 44 H 1.09002 * 109.59018 * 6.58877 * 24 9 7 45 45 H 1.08994 * 109.59180 * 246.16215 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4363 2.0818 -1.3982 5 1 1.4796 2.6342 0.7606 6 1 3.5770 1.4233 0.6379 7 6 2.0104 -1.2021 0.0005 8 1 1.5223 -2.1073 0.3305 9 7 3.3138 -1.2403 -0.4174 10 6 3.8176 -0.2596 -1.3885 11 6 4.4619 -1.0101 -2.5582 12 6 5.5291 -1.9670 -2.0200 13 6 4.8747 -2.9912 -1.0899 14 1 4.1079 -3.5408 -1.6359 15 7 5.8907 -3.9259 -0.5998 16 6 5.5325 -5.1628 -0.2020 17 8 4.3692 -5.5022 -0.2501 18 6 6.5775 -6.1242 0.3027 19 6 5.9111 -7.4470 0.6857 20 6 4.9952 -7.2423 1.9100 21 6 5.1686 -8.5426 2.7350 22 6 6.6754 -8.8583 2.5640 23 6 6.9788 -8.4744 1.1010 24 6 4.2350 -2.2630 0.0964 25 1 -0.4850 0.8399 -0.0004 26 1 2.9911 0.3488 -1.7557 27 1 4.5584 0.3810 -0.9101 28 1 3.6991 -1.5783 -3.0904 29 1 4.9240 -0.2952 -3.2390 30 1 6.2785 -1.4010 -1.4669 31 1 6.0064 -2.4850 -2.8520 32 1 6.8212 -3.6546 -0.5615 33 1 7.3153 -6.3025 -0.4797 34 1 7.0706 -5.6989 1.1769 35 1 5.3315 -7.8298 -0.1543 36 1 5.3195 -6.3775 2.4888 37 1 3.9582 -7.1248 1.5953 38 1 4.5567 -9.3451 2.3230 39 1 4.9266 -8.3702 3.7836 40 1 6.8637 -9.9195 2.7269 41 1 7.2715 -8.2546 3.2484 42 1 6.9167 -9.3560 0.4631 43 1 7.9717 -8.0303 1.0302 44 1 3.6840 -2.9766 0.7090 45 1 5.0117 -1.7876 0.6952 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006636113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:33 Heat of formation + Delta-G solvation = -38.406359 kcal Electronic energy + Delta-G solvation = -22676.898989 eV Core-core repulsion = 19500.710927 eV Total energy + Delta-G solvation = -3176.188061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.94224 -38.27948 -37.25568 -34.36592 -32.52398 -31.61455 -30.82022 -29.17115 -28.72468 -25.84190 -25.28194 -22.58294 -21.95700 -20.79841 -20.25236 -19.79578 -19.35865 -17.04443 -16.77879 -15.89397 -15.62618 -15.28793 -15.13724 -14.72281 -14.13645 -13.88279 -13.56368 -13.41402 -13.26058 -13.03714 -12.82595 -12.43136 -12.10850 -12.02208 -11.51756 -11.33025 -11.18970 -11.09887 -11.03494 -10.90634 -10.82177 -10.73061 -10.65815 -10.49060 -10.14963 -9.95954 -9.73084 -9.53696 -9.39749 -8.93413 -8.48729 -6.94571 -5.90637 -3.27035 2.89524 3.32831 3.37836 3.49493 3.52500 4.47664 4.51222 4.55610 4.62492 4.94262 5.05270 5.08915 5.17255 5.22951 5.29976 5.37323 5.43181 5.47287 5.54081 5.55977 5.58165 5.69155 5.73177 5.80442 5.84442 5.94021 5.97076 6.03764 6.05912 6.19835 6.21134 6.31857 6.33346 6.44659 6.45553 6.59851 6.64723 6.66431 6.81826 6.96937 7.75428 8.00180 8.37729 8.50876 8.98306 9.75606 10.11611 11.25430 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.003927 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.475245 B = 7129.007824 C = 7831.807456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.122 3.878 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.125 3.875 14 H 0.089 0.911 15 N -0.728 5.728 16 C 0.506 3.494 17 O -0.530 6.530 18 C -0.134 4.134 19 C -0.077 4.077 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.121 4.121 24 C 0.146 3.854 25 H 0.262 0.738 26 H 0.074 0.926 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.394 0.606 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.376 -12.977 0.150 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.326 5.326 10 C -0.004 4.004 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.019 3.981 14 H 0.107 0.893 15 N -0.379 5.379 16 C 0.292 3.708 17 O -0.406 6.406 18 C -0.174 4.174 19 C -0.095 4.095 20 C -0.152 4.152 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.159 4.159 24 C 0.018 3.982 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.227 0.773 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 17.337 -13.134 0.138 21.751 hybrid contribution 0.967 1.254 -0.026 1.584 sum 18.305 -11.880 0.113 21.822 Atomic orbital electron populations 1.69839 1.05710 1.26477 1.53072 1.25265 0.95213 0.97482 0.99581 0.86947 0.80001 0.84741 0.76951 1.21623 1.23167 1.19672 1.18961 0.84815 0.94897 1.39978 0.89596 1.44290 1.08716 1.32838 1.46713 1.21393 0.97407 0.92099 0.89464 1.22005 0.97860 0.98340 0.98949 1.21686 0.98324 0.97036 0.98327 1.21659 0.90151 0.89493 0.96772 0.89303 1.46155 1.11199 1.13895 1.66638 1.20674 0.90165 0.82368 0.77560 1.90737 1.19639 1.76809 1.53380 1.21856 0.97794 0.95463 1.02285 1.21529 0.95854 0.92979 0.99184 1.22411 1.00830 0.96871 0.95072 1.22548 0.95900 0.98105 0.99984 1.22358 0.96758 1.00626 0.96475 1.22236 0.98562 0.98602 0.96500 1.21206 0.92593 0.91246 0.93129 0.92786 0.90790 0.95695 0.91418 0.92295 0.92194 0.92523 0.77339 0.89386 0.89119 0.90280 0.92014 0.90506 0.91665 0.91800 0.92050 0.91817 0.91859 0.91822 0.91502 0.96152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.49 13.97 55.49 0.78 -27.71 16 2 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 3 Si 0.88 22.66 24.34 -169.99 -4.14 18.52 16 4 H -0.29 -7.08 6.62 56.52 0.37 -6.70 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.27 -6.83 6.64 56.52 0.38 -6.45 16 7 C -0.26 -7.50 10.03 -15.06 -0.15 -7.66 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 9 N -0.60 -14.75 2.77 -172.33 -0.48 -15.23 16 10 C 0.12 2.66 4.21 -3.72 -0.02 2.65 16 11 C -0.13 -2.28 6.08 -26.58 -0.16 -2.45 16 12 C -0.12 -1.71 5.36 -26.65 -0.14 -1.85 16 13 C 0.12 2.13 2.60 -67.81 -0.18 1.95 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.73 -9.66 5.08 -53.69 -0.27 -9.93 16 16 C 0.51 7.20 7.58 -10.99 -0.08 7.12 16 17 O -0.53 -10.00 14.45 5.56 0.08 -9.92 16 18 C -0.13 -1.31 4.83 -27.89 -0.13 -1.45 16 19 C -0.08 -0.81 2.55 -89.50 -0.23 -1.04 16 20 C -0.11 -1.36 5.40 -25.03 -0.14 -1.49 16 21 C -0.13 -1.24 6.91 -24.69 -0.17 -1.41 16 22 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 23 C -0.12 -1.00 6.46 -25.61 -0.17 -1.16 16 24 C 0.15 3.03 6.09 -3.71 -0.02 3.01 16 25 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 26 H 0.07 1.78 4.50 -51.93 -0.23 1.54 16 27 H 0.03 0.53 7.07 -51.93 -0.37 0.17 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.39 3.84 8.60 -40.82 -0.35 3.49 16 33 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.09 0.76 8.02 -51.93 -0.42 0.34 16 35 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 36 H 0.06 0.75 7.77 -51.93 -0.40 0.34 16 37 H 0.08 1.11 7.63 -51.93 -0.40 0.71 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 44 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -33.22 341.78 -8.78 -42.00 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.05 Total: 1.49 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.85 Total: -4.37 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.03 Total: -52.87 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.14 Total: 18.52 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.22 -8.78 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006636113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.596 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds