Wall clock time and date at job start Tue Mar 31 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99588 * 2 1 4 4 H 1.48504 * 109.47141 * 270.00016 * 3 2 1 5 5 H 1.48504 * 109.47081 * 30.00194 * 3 2 1 6 6 H 1.48497 * 109.46952 * 150.00062 * 3 2 1 7 7 C 1.38809 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99929 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99895 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99516 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46968 * 155.00276 * 10 9 7 12 12 C 1.52994 * 109.47398 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46910 * 299.99802 * 12 11 10 14 14 N 1.46498 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99723 * 154.99867 * 14 13 12 16 16 O 1.21281 * 120.00146 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99698 * 180.02562 * 15 14 13 18 18 C 1.54961 * 110.92464 * 66.54433 * 17 15 14 19 19 C 1.54270 * 104.16191 * 156.29299 * 18 17 15 20 20 C 1.53869 * 106.63967 * 336.44607 * 19 18 17 21 21 C 1.54268 * 106.60115 * 359.97438 * 20 19 18 22 22 C 1.53001 * 109.46928 * 59.99911 * 13 12 11 23 23 C 1.52994 * 109.47215 * 275.00088 * 10 9 7 24 24 H 0.96999 * 120.00111 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00153 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.47207 * 35.00324 * 10 9 7 27 27 H 1.09003 * 109.46813 * 59.99808 * 11 10 9 28 28 H 1.09000 * 109.46946 * 300.00256 * 11 10 9 29 29 H 1.09003 * 109.47350 * 180.02562 * 12 11 10 30 30 H 1.08995 * 109.47185 * 59.99798 * 12 11 10 31 31 H 1.08995 * 109.47193 * 299.99991 * 13 12 11 32 32 H 0.97002 * 120.00551 * 335.00868 * 14 13 12 33 33 H 1.09001 * 110.67717 * 303.23484 * 17 15 14 34 34 H 1.08997 * 110.47708 * 37.63897 * 18 17 15 35 35 H 1.09002 * 110.53308 * 274.97289 * 18 17 15 36 36 H 1.09002 * 110.03399 * 217.13605 * 19 18 17 37 37 H 1.08995 * 110.02943 * 95.75505 * 19 18 17 38 38 H 1.08999 * 110.03405 * 119.26051 * 20 19 18 39 39 H 1.09001 * 110.03705 * 240.64196 * 20 19 18 40 40 H 1.08997 * 110.48788 * 142.28685 * 21 20 19 41 41 H 1.09001 * 110.48482 * 264.93365 * 21 20 19 42 42 H 1.09003 * 109.46813 * 60.00220 * 22 13 12 43 43 H 1.09000 * 109.46946 * 179.97438 * 22 13 12 44 44 H 1.08997 * 109.47717 * 300.00075 * 23 10 9 45 45 H 1.09005 * 109.47080 * 60.00643 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3798 -1.2019 -0.0011 10 6 4.1123 -2.4707 -0.0011 11 6 5.4993 -2.2587 -0.6112 12 6 6.2641 -3.5838 -0.6119 13 6 6.4108 -4.0886 0.8250 14 7 7.1427 -5.3577 0.8244 15 6 7.8258 -5.7421 1.9208 16 8 7.8343 -5.0377 2.9080 17 6 8.5791 -7.0473 1.9199 18 6 9.7653 -7.0011 0.9239 19 6 10.7447 -8.0688 1.4535 20 6 10.4382 -8.2437 2.9512 21 6 9.2831 -7.2757 3.2806 22 6 5.0238 -4.3005 1.4352 23 6 4.2590 -2.9749 1.4359 24 1 -0.4850 0.8400 0.0004 25 1 3.8647 -0.3619 -0.0007 26 1 3.5648 -3.2063 -0.5902 27 1 6.0468 -1.5230 -0.0221 28 1 5.3948 -1.8994 -1.6350 29 1 7.2524 -3.4327 -1.0461 30 1 5.7165 -4.3191 -1.2012 31 1 6.9585 -3.3532 1.4144 32 1 7.1357 -5.9212 0.0349 33 1 7.9116 -7.8768 1.6865 34 1 10.2327 -6.0165 0.9331 35 1 9.4303 -7.2559 -0.0816 36 1 11.7727 -7.7317 1.3196 37 1 10.5897 -9.0111 0.9281 38 1 10.1336 -9.2707 3.1525 39 1 11.3176 -7.9924 3.5442 40 1 8.5960 -7.7304 3.9941 41 1 9.6729 -6.3355 3.6710 42 1 4.4762 -5.0360 0.8458 43 1 5.1283 -4.6606 2.4587 44 1 4.8065 -2.2393 2.0251 45 1 3.2708 -3.1260 1.8706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026439740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:09 Heat of formation + Delta-G solvation = -59.169270 kcal Electronic energy + Delta-G solvation = -22185.363226 eV Core-core repulsion = 19008.274817 eV Total energy + Delta-G solvation = -3177.088409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33649 -38.47239 -37.15937 -34.95058 -33.05072 -31.08291 -30.47067 -29.63166 -28.99966 -27.45475 -23.59313 -22.57479 -22.09909 -20.83490 -20.53103 -20.11907 -19.47016 -17.70220 -17.26227 -16.34521 -15.97781 -15.22436 -14.96664 -14.69462 -14.20109 -13.89149 -13.69686 -13.62887 -13.32836 -12.93424 -12.71051 -12.35712 -12.13831 -11.97320 -11.76537 -11.62134 -11.44368 -11.43346 -11.13429 -11.07960 -10.86999 -10.86211 -10.75822 -10.63343 -10.24090 -10.14842 -9.80646 -9.71403 -9.54826 -8.97710 -8.86039 -7.23748 -5.74725 -3.09861 2.58489 3.11125 3.39654 3.42932 3.47345 4.15001 4.23777 4.41948 4.61483 4.79684 4.94104 4.97325 5.00877 5.08922 5.14721 5.18557 5.22429 5.31812 5.46561 5.48370 5.54343 5.57197 5.58899 5.63500 5.71126 5.79986 5.81067 5.85514 5.93391 5.96143 6.05792 6.13187 6.19578 6.23038 6.37431 6.47903 6.58593 6.65853 6.91469 7.06855 7.46924 8.02222 8.19897 8.44708 9.23600 9.96366 10.16444 11.43753 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.045738 B = 0.002972 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.029329 B = 9417.450567 C = 9540.798638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.118 4.118 13 C 0.144 3.856 14 N -0.725 5.725 15 C 0.518 3.482 16 O -0.539 6.539 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.132 4.132 24 H 0.259 0.741 25 H 0.360 0.640 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.397 0.603 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.020 -17.301 0.394 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.073 3.927 11 C -0.163 4.163 12 C -0.157 4.157 13 C 0.040 3.960 14 N -0.376 5.376 15 C 0.305 3.695 16 O -0.415 6.415 17 C -0.138 4.138 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.143 4.143 22 C -0.163 4.163 23 C -0.173 4.173 24 H 0.069 0.931 25 H 0.193 0.807 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.231 0.769 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.768 -16.834 1.098 27.539 hybrid contribution 0.413 0.932 -0.328 1.071 sum 22.181 -15.902 0.770 27.303 Atomic orbital electron populations 1.69702 1.05108 1.25775 1.57757 1.24676 0.95234 0.97211 1.02166 0.86548 0.79265 0.85011 0.77712 1.21145 1.21818 1.20284 1.19079 0.80639 0.94655 1.42700 0.89244 1.42801 1.03994 1.02083 1.90291 1.20213 0.90214 0.89089 0.93220 1.21791 0.96899 0.95912 1.01698 1.21728 1.00421 0.98401 0.95103 1.21101 0.92750 0.84890 0.97282 1.46182 1.51686 1.23435 1.16252 1.20509 0.78673 0.87495 0.82873 1.90708 1.62402 1.55160 1.33250 1.22353 0.97286 0.95667 0.98533 1.22344 0.94749 1.00030 0.97924 1.22121 0.99295 0.98820 0.95883 1.22161 0.98571 0.99606 0.96055 1.22226 0.96594 1.00331 0.95180 1.21896 0.94685 0.99103 1.00593 1.22195 0.99996 0.94817 1.00329 0.93113 0.80708 0.92701 0.92128 0.91290 0.91858 0.91384 0.89620 0.76922 0.88179 0.91096 0.90967 0.91612 0.91601 0.91747 0.91619 0.91260 0.90190 0.92159 0.92280 0.92639 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.59 13.97 55.49 0.78 -28.81 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.33 27.73 -169.99 -4.71 17.62 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.25 16 7 C -0.24 -6.80 10.41 -15.06 -0.16 -6.95 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.71 4.93 -53.43 -0.26 -17.98 16 10 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 11 C -0.12 -1.86 5.39 -26.73 -0.14 -2.00 16 12 C -0.12 -1.37 5.39 -26.73 -0.14 -1.52 16 13 C 0.14 1.84 2.45 -67.93 -0.17 1.67 16 14 N -0.73 -7.49 5.08 -53.81 -0.27 -7.76 16 15 C 0.52 6.11 7.11 -10.98 -0.08 6.03 16 16 O -0.54 -8.73 15.39 5.56 0.09 -8.64 16 17 C -0.12 -0.97 3.28 -89.74 -0.29 -1.26 16 18 C -0.11 -0.74 6.28 -25.03 -0.16 -0.90 16 19 C -0.12 -0.72 6.80 -25.61 -0.17 -0.90 16 20 C -0.13 -0.82 6.80 -25.62 -0.17 -1.00 16 21 C -0.11 -0.92 5.90 -25.07 -0.15 -1.07 16 22 C -0.12 -1.81 5.49 -26.71 -0.15 -1.96 16 23 C -0.13 -2.37 5.51 -26.71 -0.15 -2.52 16 24 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 25 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 26 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 32 H 0.40 2.93 8.60 -40.82 -0.35 2.58 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.54 8.05 -51.93 -0.42 0.13 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.85 7.44 -51.93 -0.39 0.46 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 350.83 15.07 5.29 5.29 Total: -1.00 -33.17 350.83 -9.45 -42.63 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.13 Total: 6.81 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.22 Total: -9.15 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.24 Total: -54.55 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.17 -9.45 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026439740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.544 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds