Wall clock time and date at job start Tue Mar 31 2020 02:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48506 * 109.47201 * 269.99983 * 3 2 1 5 5 H 1.48495 * 109.47308 * 30.00215 * 3 2 1 6 6 H 1.48500 * 109.47098 * 150.00141 * 3 2 1 7 7 C 1.38813 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99758 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.47745 * 125.82040 * 14.24138 * 9 7 2 11 11 C 1.54913 * 104.83990 * 155.82760 * 10 9 7 12 12 C 1.55157 * 101.58138 * 37.09321 * 11 10 9 13 13 C 1.47023 * 125.64947 * 194.32920 * 9 7 2 14 14 H 1.08997 * 109.88010 * 300.60224 * 13 9 7 15 15 C 1.53001 * 109.88054 * 61.61057 * 13 9 7 16 16 N 1.46503 * 109.46881 * 182.57718 * 15 13 9 17 17 C 1.34775 * 119.99919 * 185.13799 * 16 15 13 18 18 O 1.21281 * 119.99987 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99950 * 180.02562 * 17 16 15 20 20 C 1.52990 * 109.47658 * 59.99244 * 19 17 16 21 21 C 1.52996 * 109.47706 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.46976 * 300.00470 * 21 20 19 23 23 C 1.53001 * 109.47459 * 59.99617 * 22 21 20 24 24 C 1.52999 * 109.47095 * 179.97438 * 19 17 16 25 25 H 0.96997 * 119.99999 * 359.97438 * 1 2 3 26 26 H 1.08999 * 110.29190 * 37.02326 * 10 9 7 27 27 H 1.08997 * 110.52464 * 274.74911 * 10 9 7 28 28 H 1.08998 * 111.00329 * 279.01813 * 11 10 9 29 29 H 1.08996 * 111.00388 * 155.16693 * 11 10 9 30 30 H 1.09004 * 110.71787 * 206.14020 * 12 11 10 31 31 H 1.09001 * 110.87131 * 82.93395 * 12 11 10 32 32 H 1.08989 * 109.47142 * 62.57569 * 15 13 9 33 33 H 1.08998 * 109.47010 * 302.57030 * 15 13 9 34 34 H 0.97004 * 119.99880 * 5.12873 * 16 15 13 35 35 H 1.09007 * 109.46492 * 299.99300 * 19 17 16 36 36 H 1.09007 * 109.47339 * 300.00493 * 20 19 17 37 37 H 1.09006 * 109.46758 * 60.00043 * 20 19 17 38 38 H 1.08998 * 109.47859 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47194 * 59.99583 * 21 20 19 40 40 H 1.08996 * 109.47020 * 299.99726 * 22 21 20 41 41 H 1.08999 * 109.47316 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47339 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47281 * 59.99645 * 23 22 21 44 44 H 1.08996 * 109.47020 * 299.99712 * 24 19 17 45 45 H 1.09004 * 109.47257 * 59.99345 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1125 -2.5562 -0.2947 11 6 -0.2510 -4.0235 -0.7718 12 6 0.7677 -4.7475 0.1478 13 6 1.8997 -3.7090 0.2946 14 1 2.7004 -3.9311 -0.4107 15 6 2.4446 -3.7318 1.7241 16 7 3.0690 -5.0306 1.9880 17 6 3.5286 -5.3191 3.2216 18 8 3.4257 -4.5034 4.1132 19 6 4.1714 -6.6549 3.4929 20 6 5.3972 -6.8232 2.5930 21 6 6.0494 -8.1796 2.8679 22 6 6.4798 -8.2506 4.3345 23 6 5.2540 -8.0823 5.2345 24 6 4.6024 -6.7251 4.9593 25 1 -0.4850 0.8400 0.0004 26 1 -0.4196 -1.8701 -1.0841 27 1 -0.7081 -2.3915 0.6032 28 1 0.0306 -4.1217 -1.8202 29 1 -1.2618 -4.3952 -0.6039 30 1 1.1375 -5.6564 -0.3268 31 1 0.3235 -4.9735 1.1172 32 1 1.6271 -3.5722 2.4271 33 1 3.1858 -2.9415 1.8431 34 1 3.1515 -5.6829 1.2748 35 1 3.4563 -7.4510 3.2855 36 1 5.0905 -6.7731 1.5482 37 1 6.1123 -6.0271 2.8004 38 1 6.9230 -8.2994 2.2271 39 1 5.3342 -8.9755 2.6603 40 1 7.1950 -7.4548 4.5422 41 1 6.9441 -9.2171 4.5305 42 1 5.5605 -8.1334 6.2792 43 1 4.5387 -8.8781 5.0268 44 1 5.3175 -5.9290 5.1663 45 1 3.7293 -6.6049 5.6008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027729202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:18 Heat of formation + Delta-G solvation = -46.240771 kcal Electronic energy + Delta-G solvation = -22585.044889 eV Core-core repulsion = 19408.517102 eV Total energy + Delta-G solvation = -3176.527787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.01723 -38.00212 -37.23118 -34.22094 -32.48828 -31.38142 -30.86964 -29.58561 -28.49278 -25.05049 -24.23605 -23.01456 -22.57463 -20.49729 -20.15411 -19.77060 -19.32597 -17.22110 -16.49191 -15.89509 -15.34413 -15.04893 -14.71407 -14.36417 -14.25504 -13.99592 -13.89346 -13.54520 -13.03093 -12.66308 -12.40266 -12.33196 -12.07043 -11.88444 -11.73552 -11.41023 -11.30939 -11.27028 -10.94476 -10.80478 -10.77725 -10.57693 -10.29188 -10.21695 -10.10457 -9.92809 -9.83328 -9.72043 -9.36664 -8.63655 -8.54725 -6.84175 -5.76546 -3.13011 2.93725 3.39343 3.45781 3.47587 3.52871 4.47890 4.50011 4.55671 4.59321 5.02018 5.03820 5.14277 5.23472 5.30143 5.33187 5.34709 5.41048 5.43501 5.51799 5.62084 5.65343 5.80756 5.82419 5.89241 5.91383 5.99795 6.03607 6.08404 6.15107 6.17204 6.24471 6.29918 6.46072 6.55559 6.63654 6.74094 6.84511 7.07759 7.51095 7.60323 7.78706 7.86015 8.25233 8.56852 9.17071 9.77984 10.45666 11.35634 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.003848 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.154109 B = 7275.477841 C = 7906.709554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.036 0.964 15 C 0.109 3.891 16 N -0.723 5.723 17 C 0.509 3.491 18 O -0.544 6.544 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.099 4.099 25 H 0.254 0.746 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.394 0.606 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.266 -18.501 3.921 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.093 0.907 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.016 4.016 16 N -0.374 5.374 17 C 0.294 3.706 18 O -0.421 6.421 19 C -0.127 4.127 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.137 4.137 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.228 0.772 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.107 -17.616 4.544 19.917 hybrid contribution 0.421 0.646 -0.271 0.817 sum 8.528 -16.970 4.273 19.467 Atomic orbital electron populations 1.69931 1.05028 1.25311 1.55922 1.24907 0.95680 0.97859 1.01413 0.86145 0.78827 0.83408 0.77559 1.21525 1.21570 1.20523 1.18982 0.90377 0.82183 1.44626 0.90651 1.44560 1.06093 1.00922 1.79807 1.21509 0.84738 0.90211 0.98854 1.22997 0.97515 0.99605 0.98581 1.22596 0.97129 0.96936 0.99695 1.21122 0.94434 0.88063 0.92042 0.94612 1.22208 0.97372 0.82900 0.99163 1.46171 1.60883 1.19184 1.11190 1.20629 0.78407 0.88932 0.82618 1.90699 1.56911 1.49979 1.44515 1.21349 0.97995 0.95541 0.97825 1.21530 0.96369 0.98185 0.98805 1.21526 1.00391 0.96996 0.96550 1.21568 0.97835 1.01556 0.94986 1.21570 0.97310 0.97383 0.99420 1.21343 1.01207 0.97203 0.93986 0.93603 0.90911 0.95618 0.92296 0.92345 0.92461 0.91861 0.91734 0.91692 0.77249 0.88876 0.91396 0.91334 0.91752 0.91807 0.91908 0.92139 0.91841 0.92020 0.91219 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.58 55.49 0.59 -26.22 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.44 9.76 -15.06 -0.15 -6.58 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.59 -14.73 3.14 -162.31 -0.51 -15.24 16 10 C 0.17 4.11 5.44 -2.35 -0.01 4.09 16 11 C -0.15 -2.72 7.09 -24.58 -0.17 -2.89 16 12 C -0.13 -2.09 6.10 -24.90 -0.15 -2.24 16 13 C 0.15 3.01 3.21 -66.95 -0.21 2.79 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.13 5.07 -4.04 -0.02 2.11 16 16 N -0.72 -10.91 5.22 -60.30 -0.31 -11.23 16 17 C 0.51 7.97 7.15 -10.99 -0.08 7.89 16 18 O -0.54 -11.06 15.98 5.56 0.09 -10.98 16 19 C -0.11 -1.17 2.53 -91.78 -0.23 -1.40 16 20 C -0.11 -1.04 5.10 -26.74 -0.14 -1.17 16 21 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 22 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.12 -0.99 5.93 -26.70 -0.16 -1.15 16 24 C -0.10 -1.10 4.49 -26.70 -0.12 -1.22 16 25 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.07 1.93 6.91 -51.93 -0.36 1.58 16 27 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.05 7.81 -51.93 -0.41 0.65 16 32 H 0.06 1.43 8.08 -51.94 -0.42 1.01 16 33 H 0.06 1.45 7.91 -51.93 -0.41 1.04 16 34 H 0.39 4.70 7.75 -40.82 -0.32 4.38 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.58 7.57 -51.93 -0.39 0.18 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 45 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -31.71 349.12 -9.95 -41.67 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.18 Total: 1.55 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.86 Total: -2.03 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.24 Total: -52.68 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.71 -9.95 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027729202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.576 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds