Wall clock time and date at job start Tue Mar 31 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99819 * 2 1 4 4 H 1.48496 * 109.47296 * 240.00031 * 3 2 1 5 5 H 1.48495 * 109.47497 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46898 * 120.00291 * 3 2 1 7 7 C 1.38807 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00447 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64260 * 0.04389 * 9 7 2 11 11 C 1.54913 * 104.82885 * 204.09039 * 10 9 7 12 12 C 1.55155 * 101.58132 * 322.99227 * 11 10 9 13 13 H 1.09005 * 110.87343 * 277.06579 * 12 11 10 14 14 C 1.53005 * 110.71859 * 153.86769 * 12 11 10 15 15 N 1.46500 * 109.47094 * 180.02562 * 14 12 11 16 16 C 1.34774 * 119.99881 * 179.97438 * 15 14 12 17 17 O 1.21285 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99942 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47078 * 59.99862 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47083 * 179.97438 * 18 16 15 24 24 C 1.47025 * 125.65140 * 180.02562 * 9 7 2 25 25 H 0.97003 * 120.00045 * 359.97438 * 1 2 3 26 26 H 1.08999 * 110.37506 * 322.92815 * 10 9 7 27 27 H 1.08999 * 110.36735 * 85.14643 * 10 9 7 28 28 H 1.09002 * 111.00524 * 204.91871 * 11 10 9 29 29 H 1.08997 * 111.00439 * 81.07049 * 11 10 9 30 30 H 1.09000 * 109.47360 * 60.02115 * 14 12 11 31 31 H 1.09002 * 109.46935 * 300.02140 * 14 12 11 32 32 H 0.96998 * 119.99994 * 359.97438 * 15 14 12 33 33 H 1.09002 * 109.46959 * 299.99950 * 18 16 15 34 34 H 1.08996 * 109.47853 * 300.00179 * 19 18 16 35 35 H 1.09002 * 109.47153 * 60.00207 * 19 18 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 38 38 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 39 39 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 40 40 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 42 42 H 1.08992 * 109.47399 * 299.99938 * 23 18 16 43 43 H 1.09004 * 109.46724 * 60.00424 * 23 18 16 44 44 H 1.08999 * 109.87632 * 59.55978 * 24 9 7 45 45 H 1.08996 * 110.00707 * 298.46612 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0009 11 6 -0.4017 -3.9325 0.6105 12 6 0.7784 -4.7524 0.0254 13 1 0.5482 -5.1001 -0.9817 14 6 1.1229 -5.9316 0.9375 15 7 2.2389 -6.6854 0.3606 16 6 2.7169 -7.7736 0.9959 17 8 2.2230 -8.1291 2.0450 18 6 3.8653 -8.5486 0.4029 19 6 5.0838 -7.6330 0.2700 20 6 6.2499 -8.4200 -0.3315 21 6 6.5945 -9.5986 0.5812 22 6 5.3760 -10.5142 0.7140 23 6 4.2105 -9.7271 1.3154 24 6 1.9318 -3.7275 -0.0005 25 1 -0.4850 0.8401 0.0004 26 1 -0.5995 -1.7590 0.6148 27 1 -0.5272 -2.4845 -1.0192 28 1 -1.3590 -4.3329 0.2767 29 1 -0.3524 -3.8986 1.6988 30 1 0.2545 -6.5836 1.0322 31 1 1.4065 -5.5589 1.9217 32 1 2.6337 -6.4012 -0.4786 33 1 3.5820 -8.9215 -0.5814 34 1 4.8383 -6.7931 -0.3798 35 1 5.3671 -7.2601 1.2543 36 1 7.1182 -7.7678 -0.4257 37 1 5.9669 -8.7932 -1.3157 38 1 6.8775 -9.2253 1.5654 39 1 7.4250 -10.1595 0.1524 40 1 5.6216 -11.3540 1.3639 41 1 5.0930 -10.8874 -0.2702 42 1 4.4939 -9.3538 2.2995 43 1 3.3424 -10.3795 1.4104 44 1 2.5578 -3.8510 0.8832 45 1 2.5303 -3.8660 -0.9009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028372968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:38 Heat of formation + Delta-G solvation = -45.489604 kcal Electronic energy + Delta-G solvation = -22303.570854 eV Core-core repulsion = 19127.075640 eV Total energy + Delta-G solvation = -3176.495214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.20218 -38.08854 -37.32949 -34.63548 -32.58830 -31.37370 -30.92876 -29.68959 -28.16906 -25.64074 -24.13921 -23.02248 -22.61003 -20.70508 -20.11417 -19.82038 -19.41135 -17.24383 -16.76207 -15.97092 -15.73882 -14.93801 -14.89018 -14.61073 -14.32413 -14.25573 -13.81465 -13.57739 -12.98304 -12.72128 -12.51274 -12.44151 -12.38444 -11.76357 -11.70525 -11.52337 -11.42230 -11.35350 -10.96513 -10.86516 -10.79238 -10.64612 -10.43194 -10.31998 -10.15406 -10.01462 -9.85759 -9.63228 -9.44116 -8.90680 -8.65380 -6.84222 -5.65996 -3.07830 2.71443 3.29012 3.39900 3.44008 3.45444 4.43034 4.46376 4.49231 4.51723 4.95116 4.96193 5.01485 5.15975 5.17285 5.24618 5.26728 5.28901 5.39260 5.41152 5.52400 5.59202 5.70571 5.79633 5.84235 5.86591 5.89468 5.95172 5.99392 6.08287 6.09483 6.13767 6.22194 6.34340 6.49643 6.55050 6.58918 6.73071 6.90787 7.50759 7.60748 7.61593 7.85134 8.31466 8.35984 9.21449 9.82476 10.47409 11.37904 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.003432 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.526911 B = 8155.604074 C = 9052.323377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.132 3.868 15 N -0.725 5.725 16 C 0.513 3.487 17 O -0.546 6.546 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.099 4.099 24 C 0.142 3.858 25 H 0.253 0.747 26 H 0.107 0.893 27 H 0.012 0.988 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.401 0.599 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.024 0.976 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.507 -18.908 -1.486 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.376 5.376 16 C 0.300 3.700 17 O -0.424 6.424 18 C -0.127 4.127 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.157 4.157 23 C -0.137 4.137 24 C 0.016 3.984 25 H 0.063 0.937 26 H 0.124 0.876 27 H 0.030 0.970 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 8.093 -18.908 -0.724 20.580 hybrid contribution 0.620 1.031 -0.561 1.328 sum 8.713 -17.877 -1.286 19.929 Atomic orbital electron populations 1.69789 1.04897 1.24902 1.57534 1.24790 0.95735 0.97734 1.02404 0.86146 0.78405 0.83019 0.77890 1.21221 1.21548 1.21146 1.19031 0.90463 0.82523 1.43225 0.90601 1.44496 1.01994 0.99714 1.86842 1.21930 0.84659 0.92516 0.98191 1.23004 0.95550 0.98585 1.00305 1.22445 0.98304 0.94048 0.98600 0.90640 1.21441 0.88331 0.92177 0.97217 1.46122 1.36170 1.28704 1.26579 1.20664 0.84024 0.80615 0.84746 1.90683 1.60386 1.68350 1.22952 1.21353 0.93825 0.96598 1.00935 1.21546 0.93840 0.97458 1.02187 1.21526 0.97949 0.97079 0.98952 1.21573 0.97609 0.96632 1.00160 1.21552 0.95136 0.97959 1.01049 1.21324 0.98201 0.95517 0.98622 1.21306 0.93478 0.85978 0.97627 0.93664 0.87560 0.97015 0.92141 0.91846 0.91794 0.91361 0.76512 0.88722 0.91183 0.91243 0.91581 0.91777 0.91873 0.92070 0.91795 0.92003 0.91201 0.91354 0.95847 0.96504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.45 3.39 -170.08 -0.58 -16.03 16 10 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 11 C -0.14 -2.52 6.53 -24.58 -0.16 -2.68 16 12 C -0.11 -1.91 3.02 -88.79 -0.27 -2.18 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 14 C 0.13 1.98 4.99 -4.04 -0.02 1.96 16 15 N -0.72 -9.39 5.29 -60.29 -0.32 -9.71 16 16 C 0.51 6.95 7.15 -10.99 -0.08 6.88 16 17 O -0.55 -9.50 15.98 5.55 0.09 -9.41 16 18 C -0.11 -1.05 2.53 -91.77 -0.23 -1.28 16 19 C -0.11 -1.01 5.10 -26.73 -0.14 -1.15 16 20 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 21 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 22 C -0.12 -0.90 5.92 -26.76 -0.16 -1.06 16 23 C -0.10 -0.97 4.49 -26.76 -0.12 -1.09 16 24 C 0.14 2.88 6.52 -3.07 -0.02 2.86 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.14 8.06 -51.93 -0.42 0.73 16 32 H 0.40 4.41 7.75 -40.82 -0.32 4.10 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.61 7.56 -51.93 -0.39 0.22 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 44 H 0.02 0.49 7.76 -51.93 -0.40 0.08 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -31.67 348.63 -9.93 -41.60 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.14 Total: 0.62 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -1.78 Total: -3.00 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.34 Total: -52.10 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.67 -9.93 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028372968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.890 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds