Wall clock time and date at job start Tue Mar 31 2020 02:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99528 * 2 1 4 4 H 1.48502 * 109.46939 * 274.97823 * 3 2 1 5 5 H 1.48493 * 109.47667 * 34.97994 * 3 2 1 6 6 H 1.48505 * 109.46921 * 154.98328 * 3 2 1 7 7 C 1.38811 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00255 * 186.81264 * 7 2 1 9 9 N 1.36944 * 119.99475 * 6.81615 * 7 2 1 10 10 C 1.47022 * 125.65195 * 353.81136 * 9 7 2 11 11 C 1.54321 * 107.26814 * 181.09336 * 10 9 7 12 12 C 1.55153 * 102.94299 * 22.19263 * 11 10 9 13 13 H 1.09004 * 111.03862 * 82.58899 * 12 11 10 14 14 C 1.53000 * 111.00220 * 206.42151 * 12 11 10 15 15 N 1.46501 * 109.47487 * 178.65269 * 14 12 11 16 16 C 1.34771 * 120.00447 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00064 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.47074 * 60.00094 * 18 16 15 20 20 C 1.52999 * 109.46784 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47264 * 299.99649 * 20 19 18 22 22 C 1.52999 * 109.46933 * 60.00442 * 21 20 19 23 23 C 1.52999 * 109.46784 * 299.99852 * 22 21 20 24 24 C 1.47428 * 125.64287 * 173.84918 * 9 7 2 25 25 H 0.97001 * 120.00611 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.87687 * 300.51173 * 10 9 7 27 27 H 1.09000 * 109.88347 * 61.67539 * 10 9 7 28 28 H 1.08993 * 110.72345 * 263.82135 * 11 10 9 29 29 H 1.09004 * 110.71506 * 140.55271 * 11 10 9 30 30 H 1.08997 * 109.47337 * 58.64609 * 14 12 11 31 31 H 1.09004 * 109.47196 * 298.64679 * 14 12 11 32 32 H 0.97000 * 119.99742 * 359.97438 * 15 14 12 33 33 H 1.08995 * 109.46748 * 299.99564 * 18 16 15 34 34 H 1.08992 * 109.47258 * 59.99547 * 19 18 16 35 35 H 1.09003 * 109.47023 * 299.99637 * 19 18 16 36 36 H 1.09007 * 109.47050 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.47198 * 60.00189 * 20 19 18 38 38 H 1.09000 * 109.46777 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.46658 * 300.00067 * 21 20 19 40 40 H 1.08992 * 109.47269 * 59.99728 * 22 21 20 41 41 H 1.09000 * 109.46531 * 180.02562 * 22 21 20 42 42 H 1.09007 * 109.47050 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47658 * 300.00079 * 23 22 21 44 44 H 1.08997 * 110.36770 * 37.00049 * 24 9 7 45 45 H 1.09003 * 110.46133 * 274.71989 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8026 6 1 3.5964 1.4122 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0846 -1.2053 0.1115 9 7 1.3328 -2.3839 -0.1397 10 6 -0.1293 -2.5351 -0.1703 11 6 -0.4311 -4.0415 -0.3156 12 6 0.8675 -4.7084 0.2099 13 1 0.8625 -4.7711 1.2981 14 6 1.0657 -6.0907 -0.4152 15 7 2.3150 -6.6754 0.0784 16 6 2.6984 -7.8979 -0.3398 17 8 2.0089 -8.5143 -1.1243 18 6 3.9839 -8.4990 0.1676 19 6 3.9182 -8.6330 1.6903 20 6 5.2230 -9.2438 2.2052 21 6 5.4208 -10.6261 1.5797 22 6 5.4865 -10.4921 0.0570 23 6 4.1817 -9.8812 -0.4579 24 6 1.9490 -3.7155 -0.2842 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5603 -2.1583 0.7572 27 1 -0.5405 -1.9909 -1.0205 28 1 -0.6028 -4.3015 -1.3600 29 1 -1.2858 -4.3245 0.2989 30 1 1.1127 -5.9957 -1.5000 31 1 0.2303 -6.7358 -0.1429 32 1 2.8667 -6.1823 0.7056 33 1 4.8190 -7.8537 -0.1048 34 1 3.0830 -9.2782 1.9625 35 1 3.7769 -7.6483 2.1359 36 1 5.1764 -9.3389 3.2901 37 1 6.0585 -8.5988 1.9329 38 1 6.3502 -11.0614 1.9470 39 1 4.5853 -11.2709 1.8521 40 1 6.3219 -9.8472 -0.2153 41 1 5.6269 -11.4769 -0.3885 42 1 4.2283 -9.7862 -1.5428 43 1 3.3461 -10.5262 -0.1856 44 1 2.8429 -3.7891 0.3351 45 1 2.1944 -3.9105 -1.3282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028372969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:43 Heat of formation + Delta-G solvation = -47.097100 kcal Electronic energy + Delta-G solvation = -22214.072346 eV Core-core repulsion = 19037.507426 eV Total energy + Delta-G solvation = -3176.564920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.21059 -38.09103 -37.34034 -34.63862 -32.58416 -31.39221 -30.94877 -29.69179 -28.20411 -25.64185 -24.14499 -23.04044 -22.63787 -20.66788 -20.06440 -19.91479 -19.47637 -17.24925 -16.73169 -16.06413 -15.43445 -15.39075 -14.66780 -14.56363 -14.34622 -14.13129 -13.95911 -13.59875 -13.03942 -12.75123 -12.56701 -12.43837 -12.32517 -11.97173 -11.72646 -11.51558 -11.39619 -11.37237 -10.91779 -10.88340 -10.80437 -10.66573 -10.40241 -10.34705 -10.13843 -9.99493 -9.89334 -9.65966 -9.52817 -8.91452 -8.59171 -6.83647 -5.73708 -3.06318 2.70878 3.27920 3.39120 3.44234 3.46287 4.41157 4.45372 4.48170 4.49719 4.94036 4.94443 4.99965 5.14019 5.16171 5.21976 5.25128 5.27937 5.36842 5.40406 5.53627 5.57423 5.69252 5.76752 5.81136 5.84601 5.90217 5.91811 5.96712 6.05949 6.08098 6.08639 6.20350 6.34245 6.47696 6.50842 6.53144 6.69224 6.91071 7.54487 7.60344 7.63440 7.81371 8.24970 8.30663 9.20607 9.81329 10.48012 11.38480 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.003227 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.274218 B = 8673.557633 C = 9306.807715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.724 5.724 16 C 0.514 3.486 17 O -0.547 6.547 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.098 4.098 24 C 0.143 3.857 25 H 0.252 0.748 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.401 0.599 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.034 0.966 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.459 -19.339 3.604 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.097 0.903 14 C 0.008 3.992 15 N -0.375 5.375 16 C 0.300 3.700 17 O -0.424 6.424 18 C -0.128 4.128 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.136 4.136 24 C 0.017 3.983 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.890 -19.528 3.053 21.282 hybrid contribution 0.646 1.283 0.285 1.465 sum 8.536 -18.245 3.338 20.418 Atomic orbital electron populations 1.69979 1.04933 1.25067 1.56704 1.24830 0.95705 0.97693 1.02134 0.86124 0.78662 0.83613 0.77523 1.21607 1.21766 1.20634 1.19057 0.91074 0.82597 1.43167 0.90477 1.44481 1.01699 1.01095 1.85996 1.21157 0.84401 0.88322 1.00924 1.22854 0.95464 0.99109 0.99945 1.22615 0.98578 0.92481 1.00088 0.90302 1.21382 0.85345 0.93458 0.98973 1.46115 1.25156 1.18249 1.48013 1.20654 0.87278 0.81120 0.80948 1.90680 1.55555 1.61311 1.34892 1.21365 0.95971 0.98585 0.96921 1.21533 0.98696 1.01683 0.92970 1.21531 0.97371 0.96639 1.00026 1.21564 1.01657 0.97138 0.95554 1.21565 0.97708 1.00877 0.95612 1.21331 0.97718 0.94213 1.00372 1.21548 0.93847 0.85918 0.97033 0.93736 0.93941 0.93596 0.92185 0.91996 0.91471 0.91815 0.76439 0.88546 0.91392 0.91287 0.91661 0.91666 0.92058 0.91952 0.91905 0.91784 0.91276 0.91277 0.94774 0.96306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 10.36 55.49 0.58 -26.48 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.03 29.56 -169.99 -5.02 17.01 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.42 10.26 -15.06 -0.15 -6.57 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.61 -15.39 3.39 -170.08 -0.58 -15.97 16 10 C 0.18 4.27 5.38 -3.07 -0.02 4.25 16 11 C -0.13 -2.47 6.42 -24.90 -0.16 -2.63 16 12 C -0.12 -1.95 3.10 -88.48 -0.27 -2.22 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 14 C 0.13 1.93 5.12 -4.04 -0.02 1.91 16 15 N -0.72 -9.24 5.30 -60.29 -0.32 -9.56 16 16 C 0.51 6.85 7.15 -10.99 -0.08 6.77 16 17 O -0.55 -9.35 15.98 5.56 0.09 -9.26 16 18 C -0.11 -1.05 2.53 -91.77 -0.23 -1.28 16 19 C -0.11 -0.92 5.10 -26.73 -0.14 -1.05 16 20 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 21 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 22 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 23 C -0.10 -0.96 4.49 -26.73 -0.12 -1.08 16 24 C 0.14 2.85 6.41 -2.53 -0.02 2.84 16 25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.04 1.13 7.55 -51.93 -0.39 0.74 16 27 H 0.05 1.24 7.36 -51.93 -0.38 0.85 16 28 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.40 4.41 7.76 -40.82 -0.32 4.09 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.53 7.57 -51.93 -0.39 0.14 16 36 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.74 8.10 -51.92 -0.42 0.32 16 43 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -31.88 349.56 -9.97 -41.85 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.20 Total: -0.47 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.78 Total: -2.40 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.32 Total: -52.00 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.88 -9.97 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028372969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.247 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds