Wall clock time and date at job start Tue Mar 31 2020 02:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47042 * 89.99836 * 3 2 1 5 5 H 1.48499 * 109.47021 * 209.99312 * 3 2 1 6 6 H 1.48492 * 109.47106 * 329.99663 * 3 2 1 7 7 C 1.38809 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99514 * 15.17967 * 7 2 1 9 9 N 1.36932 * 120.00281 * 195.17204 * 7 2 1 10 10 C 1.47068 * 136.05910 * 7.46472 * 9 7 2 11 11 C 1.53747 * 87.88933 * 152.95958 * 10 9 7 12 12 N 1.46500 * 114.08974 * 139.78117 * 11 10 9 13 13 C 1.34778 * 120.00356 * 111.55600 * 12 11 10 14 14 O 1.21277 * 119.99856 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99991 * 180.02562 * 13 12 11 16 16 C 1.53013 * 109.46994 * 299.99794 * 15 13 12 17 17 C 1.52995 * 109.45962 * 164.04797 * 16 15 13 18 18 C 1.52987 * 109.50849 * 315.99282 * 17 16 15 19 19 C 1.53001 * 109.47039 * 112.93802 * 18 17 16 20 20 C 1.53008 * 109.42798 * 284.03833 * 19 18 17 21 21 C 1.52985 * 109.48460 * 75.96502 * 20 19 18 22 22 C 1.52992 * 109.50480 * 247.06534 * 21 20 19 23 23 C 1.47070 * 136.05620 * 187.82655 * 9 7 2 24 24 H 0.96995 * 120.00585 * 174.90647 * 1 2 3 25 25 H 1.09005 * 113.46482 * 267.69349 * 10 9 7 26 26 H 1.09000 * 113.46807 * 38.12852 * 10 9 7 27 27 H 1.09009 * 114.57331 * 272.66100 * 11 10 9 28 28 H 0.97006 * 120.00104 * 291.56486 * 12 11 10 29 29 H 1.08997 * 109.47333 * 60.00239 * 15 13 12 30 30 H 1.09000 * 109.47902 * 284.04439 * 16 15 13 31 31 H 1.09004 * 109.47490 * 44.05735 * 16 15 13 32 32 H 1.08997 * 109.46931 * 195.97921 * 17 16 15 33 33 H 1.08998 * 109.45773 * 75.99948 * 17 16 15 34 34 H 1.08997 * 109.47491 * 352.93134 * 18 17 16 35 35 H 1.09006 * 109.46846 * 232.93554 * 18 17 16 36 36 H 1.09003 * 109.47770 * 164.05574 * 19 18 17 37 37 H 1.09000 * 109.48776 * 44.03028 * 19 18 17 38 38 H 1.08993 * 109.46839 * 315.95800 * 20 19 18 39 39 H 1.09004 * 109.46480 * 195.96438 * 20 19 18 40 40 H 1.09003 * 109.46299 * 127.05191 * 21 20 19 41 41 H 1.08999 * 109.46443 * 7.07291 * 21 20 19 42 42 H 1.09011 * 109.47165 * 284.01452 * 22 21 20 43 43 H 1.08996 * 109.47603 * 164.01254 * 22 21 20 44 44 H 1.08996 * 113.47267 * 321.86760 * 23 9 7 45 45 H 1.08998 * 113.46600 * 92.25546 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5478 1.4401 -0.6999 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1212 -0.2440 9 7 3.3437 -1.2227 0.3109 10 6 4.3297 -0.2528 0.8109 11 6 5.1047 -1.4366 1.4125 12 7 6.5594 -1.3306 1.2753 13 6 7.3271 -1.1393 2.3664 14 8 6.8137 -1.0552 3.4619 15 6 8.8235 -1.0297 2.2251 16 6 9.3730 -2.3174 1.6076 17 6 10.7952 -2.0724 1.0995 18 6 10.8500 -0.7344 0.3597 19 6 11.7158 0.2496 1.1491 20 6 10.9289 0.7656 2.3556 21 6 10.8874 -0.3150 3.4378 22 6 9.4517 -0.8168 3.6039 23 6 4.4217 -2.2228 0.2849 24 1 -0.4851 -0.8366 -0.0746 25 1 4.8718 0.2629 0.0181 26 1 3.9266 0.4294 1.5593 27 1 4.7863 -1.7245 2.4145 28 1 6.9701 -1.3981 0.3990 29 1 9.0667 -0.1850 1.5806 30 1 9.3871 -3.1047 2.3613 31 1 8.7375 -2.6217 0.7759 32 1 11.0815 -2.8751 0.4200 33 1 11.4836 -2.0488 1.9443 34 1 9.8417 -0.3325 0.2603 35 1 11.2807 -0.8841 -0.6304 36 1 11.9896 1.0879 0.5083 37 1 12.6187 -0.2551 1.4929 38 1 9.9124 1.0112 2.0482 39 1 11.4144 1.6577 2.7514 40 1 11.2378 0.1027 4.3817 41 1 11.5310 -1.1452 3.1469 42 1 8.8708 -0.0792 4.1579 43 1 9.4573 -1.7598 4.1503 44 1 4.0970 -3.2190 0.5853 45 1 4.9874 -2.2271 -0.6468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030655831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:18 Heat of formation + Delta-G solvation = 13.883489 kcal Electronic energy + Delta-G solvation = -22881.328049 eV Core-core repulsion = 19707.407446 eV Total energy + Delta-G solvation = -3173.920603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56578 -38.96011 -37.68191 -33.87925 -33.13215 -32.96445 -32.04288 -28.19655 -27.01686 -26.12601 -25.30759 -23.11383 -22.14883 -21.01255 -20.84304 -19.93537 -19.11524 -17.51161 -17.32391 -16.25382 -15.77565 -15.36613 -14.92680 -14.47395 -14.36793 -14.28339 -13.88454 -13.65494 -13.50884 -13.29707 -12.98485 -12.17650 -12.16381 -11.98624 -11.89239 -11.64446 -11.51228 -11.44785 -11.32896 -11.23564 -11.02565 -10.68564 -10.63106 -10.26338 -10.19230 -9.92135 -9.77771 -9.49845 -9.25956 -8.76419 -8.53493 -7.22467 -6.33194 -3.25963 2.79807 3.34334 3.43840 3.48157 3.62758 4.30121 4.51816 4.53910 4.58863 4.72228 4.77756 4.79894 4.90619 4.94553 4.96443 5.02542 5.12933 5.25262 5.36888 5.39652 5.50378 5.60860 5.65178 5.65306 5.74090 5.75437 5.78260 5.85823 5.90049 5.96354 5.98146 6.10917 6.12048 6.14887 6.23464 6.28840 6.31566 6.37732 6.47339 7.00962 7.07557 7.72948 8.21754 8.43538 8.94934 9.47837 10.32820 11.17099 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.003892 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.146886 B = 7193.343691 C = 7349.426399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.021 4.021 3 Si 1.062 2.938 4 H -0.292 1.292 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.307 4.307 8 H 0.084 0.916 9 N -0.618 5.618 10 C 0.089 3.911 11 C 0.102 3.898 12 N -0.716 5.716 13 C 0.513 3.487 14 O -0.543 6.543 15 C -0.127 4.127 16 C -0.110 4.110 17 C -0.126 4.126 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.100 4.100 23 C 0.111 3.889 24 H 0.262 0.738 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.397 0.603 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.145 -2.251 2.036 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.220 4.220 3 Si 0.893 3.107 4 H -0.220 1.220 5 H -0.209 1.209 6 H -0.222 1.222 7 C -0.433 4.433 8 H 0.101 0.899 9 N -0.346 5.346 10 C -0.038 4.038 11 C -0.004 4.004 12 N -0.367 5.367 13 C 0.299 3.701 14 O -0.419 6.419 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.163 4.163 18 C -0.168 4.168 19 C -0.157 4.157 20 C -0.168 4.168 21 C -0.164 4.164 22 C -0.138 4.138 23 C -0.016 4.016 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.231 0.769 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 26.272 -0.563 2.825 26.429 hybrid contribution 0.285 -1.684 -0.732 1.858 sum 26.557 -2.246 2.093 26.734 Atomic orbital electron populations 1.70899 1.05393 1.29643 1.51134 1.25783 0.96456 1.00921 0.98850 0.83774 0.74436 0.75836 0.76611 1.21958 1.20918 1.22183 1.20105 0.80128 0.96089 1.47008 0.89880 1.45897 1.03611 1.08059 1.77012 1.23156 0.90221 0.94222 0.96181 1.23412 0.77090 0.98869 1.01004 1.46043 1.07669 1.73383 1.09607 1.20736 0.89225 0.75715 0.84386 1.90688 1.75304 1.49754 1.26193 1.21929 0.91292 1.01161 1.00344 1.21637 0.96600 0.96065 1.00469 1.21860 0.96930 0.97226 1.00309 1.21853 1.00751 0.95500 0.98707 1.21716 0.98290 0.98779 0.96890 1.21852 1.01013 0.98244 0.95727 1.21880 0.97120 0.98700 0.98695 1.21446 0.95117 1.02344 0.94873 1.22673 0.89351 0.94866 0.94711 0.92763 0.93622 0.92686 0.86139 0.76858 0.86517 0.91282 0.91518 0.91989 0.90681 0.90975 0.92122 0.92258 0.91851 0.90982 0.92244 0.92126 0.90951 0.90801 0.91582 0.93113 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.62 13.70 55.49 0.76 -28.86 16 2 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 3 Si 1.06 27.12 25.50 -169.99 -4.34 22.79 16 4 H -0.29 -7.29 6.97 56.52 0.39 -6.90 16 5 H -0.28 -6.66 5.66 56.52 0.32 -6.34 16 6 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 7 C -0.31 -8.96 11.03 -15.06 -0.17 -9.12 16 8 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 9 N -0.62 -15.37 3.62 -184.62 -0.67 -16.04 16 10 C 0.09 1.93 5.42 -8.37 -0.05 1.89 16 11 C 0.10 1.86 4.63 -67.68 -0.31 1.54 16 12 N -0.72 -10.06 5.15 -53.49 -0.28 -10.33 16 13 C 0.51 7.37 7.14 -10.99 -0.08 7.29 16 14 O -0.54 -10.11 15.27 5.56 0.08 -10.02 16 15 C -0.13 -1.27 1.93 -91.76 -0.18 -1.45 16 16 C -0.11 -0.90 5.04 -26.73 -0.13 -1.03 16 17 C -0.13 -0.83 5.48 -26.74 -0.15 -0.98 16 18 C -0.13 -0.86 5.47 -26.74 -0.15 -1.01 16 19 C -0.12 -0.76 5.59 -26.73 -0.15 -0.91 16 20 C -0.13 -0.97 5.47 -26.73 -0.15 -1.11 16 21 C -0.13 -0.97 5.48 -26.74 -0.15 -1.12 16 22 C -0.10 -1.01 4.60 -26.73 -0.12 -1.13 16 23 C 0.11 2.16 8.45 -8.50 -0.07 2.09 16 24 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 25 H 0.05 0.95 7.02 -51.93 -0.36 0.59 16 26 H 0.06 1.28 6.22 -51.93 -0.32 0.96 16 27 H 0.12 2.41 7.45 -51.92 -0.39 2.03 16 28 H 0.40 4.41 8.10 -40.82 -0.33 4.08 16 29 H 0.12 1.06 2.83 -51.93 -0.15 0.91 16 30 H 0.07 0.60 7.82 -51.93 -0.41 0.19 16 31 H 0.07 0.53 7.20 -51.93 -0.37 0.16 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.48 4.69 -51.93 -0.24 0.24 16 34 H 0.07 0.51 5.47 -51.93 -0.28 0.23 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.38 7.47 -51.93 -0.39 -0.01 16 38 H 0.07 0.60 5.47 -51.93 -0.28 0.32 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.50 4.69 -51.93 -0.24 0.25 16 42 H 0.07 0.89 7.52 -51.92 -0.39 0.50 16 43 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.04 0.64 8.13 -51.93 -0.42 0.21 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -33.75 327.77 -8.63 -42.38 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.20 Total: 0.92 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.94 Total: -5.77 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.18 Total: -55.23 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 27.12 SS G_CDS: -4.34 Total: 22.79 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.75 -8.63 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030655831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.260 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds