Wall clock time and date at job start Tue Mar 31 2020 03:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00114 * 2 1 4 4 H 1.48498 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.46989 * 300.00493 * 3 2 1 6 6 H 1.48500 * 109.46622 * 60.00111 * 3 2 1 7 7 C 1.38820 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99919 * 160.40675 * 7 2 1 9 9 N 1.36934 * 119.99589 * 340.40722 * 7 2 1 10 10 C 1.50161 * 120.53905 * 336.69701 * 9 7 2 11 11 C 1.46238 * 107.53321 * 109.57476 * 10 9 7 12 12 C 1.52529 * 114.28289 * 58.40050 * 11 10 9 13 13 C 1.50119 * 105.41858 * 270.59945 * 12 11 10 14 14 C 1.54841 * 110.81762 * 97.67665 * 13 12 11 15 15 H 1.09008 * 109.35455 * 81.20042 * 14 13 12 16 16 N 1.46495 * 109.36304 * 200.92574 * 14 13 12 17 17 C 1.34774 * 120.00606 * 205.00591 * 16 14 13 18 18 O 1.21286 * 119.99619 * 359.97438 * 17 16 14 19 19 C 1.50695 * 120.00558 * 180.02562 * 17 16 14 20 20 C 1.54893 * 110.48196 * 294.77025 * 19 17 16 21 21 C 1.54893 * 102.74650 * 203.37382 * 20 19 17 22 22 C 1.54270 * 104.19047 * 37.94668 * 21 20 19 23 23 C 1.53873 * 106.60126 * 336.38563 * 22 21 20 24 24 C 1.43438 * 120.53322 * 156.67879 * 9 7 2 25 25 H 0.96993 * 120.00096 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.84884 * 350.06275 * 10 9 7 27 27 H 1.09002 * 109.89988 * 229.10486 * 10 9 7 28 28 H 1.09007 * 108.52051 * 297.16771 * 11 10 9 29 29 H 1.08996 * 108.52570 * 179.65406 * 11 10 9 30 30 H 1.08999 * 110.24765 * 151.61852 * 12 11 10 31 31 H 1.09001 * 110.36151 * 29.63538 * 12 11 10 32 32 H 1.09000 * 109.20650 * 337.33453 * 13 12 11 33 33 H 1.09003 * 109.20643 * 218.02629 * 13 12 11 34 34 H 0.97000 * 119.99925 * 25.00543 * 16 14 13 35 35 H 1.09004 * 110.43604 * 57.45336 * 19 17 16 36 36 H 1.09006 * 110.75616 * 85.06659 * 20 19 17 37 37 H 1.08994 * 110.75815 * 321.69219 * 20 19 17 38 38 H 1.08993 * 110.49144 * 279.26598 * 21 20 19 39 39 H 1.09001 * 110.47950 * 156.61891 * 21 20 19 40 40 H 1.09005 * 110.03041 * 95.67576 * 22 21 20 41 41 H 1.09004 * 110.02745 * 217.09771 * 22 21 20 42 42 H 1.09001 * 110.03052 * 119.28934 * 23 22 21 43 43 H 1.08998 * 110.03036 * 240.67082 * 23 22 21 44 44 H 1.08999 * 108.16232 * 149.87165 * 24 9 7 45 45 H 1.09004 * 108.16413 * 33.29929 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0433 -1.2291 -0.3142 9 7 1.3850 -2.3539 0.3966 10 6 0.1863 -2.2990 1.2994 11 6 -0.9805 -2.6836 0.5062 12 6 -0.8830 -4.0705 -0.1212 13 6 -0.2327 -3.8592 -1.4576 14 6 1.2860 -4.1520 -1.3830 15 1 1.4503 -5.2274 -1.4521 16 7 1.9646 -3.4846 -2.4965 17 6 3.1405 -3.9604 -2.9518 18 8 3.6371 -4.9410 -2.4393 19 6 3.8389 -3.2734 -4.0969 20 6 2.9978 -3.3889 -5.3925 21 6 4.0597 -3.2129 -6.5062 22 6 5.2987 -3.9584 -5.9686 23 6 5.1583 -3.9968 -4.4367 24 6 1.8643 -3.6322 -0.0433 25 1 -0.4850 0.8400 0.0004 26 1 0.0567 -1.2865 1.6813 27 1 0.3148 -2.9938 2.1294 28 1 -1.1140 -1.9519 -0.2906 29 1 -1.8606 -2.6552 1.1486 30 1 -1.8777 -4.4975 -0.2489 31 1 -0.2690 -4.7246 0.4980 32 1 -0.3837 -2.8261 -1.7705 33 1 -0.6909 -4.5252 -2.1887 34 1 1.5676 -2.7001 -2.9063 35 1 4.0285 -2.2277 -3.8548 36 1 2.2521 -2.5953 -5.4409 37 1 2.5255 -4.3689 -5.4603 38 1 4.2848 -2.1570 -6.6554 39 1 3.7158 -3.6658 -7.4361 40 1 5.3261 -4.9728 -6.3667 41 1 6.2065 -3.4230 -6.2471 42 1 5.1175 -5.0298 -4.0914 43 1 5.9983 -3.4808 -3.9718 44 1 1.6382 -4.3649 0.7314 45 1 2.9483 -3.5733 -0.1414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034065913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:55 Heat of formation + Delta-G solvation = -32.098066 kcal Electronic energy + Delta-G solvation = -23637.173124 eV Core-core repulsion = 20461.258611 eV Total energy + Delta-G solvation = -3175.914513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.73725 -37.99909 -36.69803 -34.13253 -33.07797 -31.02947 -30.25554 -28.71970 -28.51711 -26.06500 -24.13023 -23.01987 -21.65155 -20.45315 -19.89695 -19.14635 -18.93967 -17.01365 -16.60053 -15.75765 -15.34431 -14.99979 -14.66984 -14.54324 -13.79495 -13.71346 -13.41103 -13.30396 -12.92345 -12.34378 -12.24239 -11.77466 -11.71891 -11.53558 -11.30242 -11.22793 -11.12847 -11.01134 -10.79412 -10.74804 -10.66036 -10.46446 -10.35788 -10.07053 -9.94860 -9.70217 -9.43342 -9.23643 -9.14208 -8.57920 -8.26267 -6.68560 -5.80832 -3.18709 3.19292 3.34186 3.43795 3.46103 3.83038 4.48799 4.58115 4.67157 4.86088 5.31505 5.36123 5.40962 5.47999 5.50030 5.51610 5.59912 5.67064 5.68364 5.69398 5.88088 5.93841 5.97572 6.09346 6.16076 6.23315 6.26470 6.30387 6.33564 6.46186 6.48145 6.55959 6.64476 6.89171 6.94334 6.99882 7.06024 7.28040 7.31025 7.61860 7.74221 7.99058 8.19629 8.42006 8.84706 9.18631 9.86192 10.39741 11.25908 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.006211 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.558660 B = 4506.791989 C = 5582.532263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.001 3.999 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.064 0.936 9 N -0.583 5.583 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.109 4.109 14 C 0.117 3.883 15 H 0.069 0.931 16 N -0.700 5.700 17 C 0.518 3.482 18 O -0.559 6.559 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.111 4.111 24 C 0.151 3.849 25 H 0.251 0.749 26 H 0.089 0.911 27 H 0.005 0.995 28 H 0.100 0.900 29 H 0.024 0.976 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.400 0.600 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 -5.947 -9.001 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.367 4.367 8 H 0.082 0.918 9 N -0.304 5.304 10 C 0.041 3.959 11 C -0.168 4.168 12 C -0.150 4.150 13 C -0.147 4.147 14 C 0.009 3.991 15 H 0.087 0.913 16 N -0.348 5.348 17 C 0.303 3.697 18 O -0.439 6.439 19 C -0.137 4.137 20 C -0.150 4.150 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.149 4.149 24 C 0.021 3.979 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.023 0.977 28 H 0.119 0.881 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.234 0.766 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.491 -6.483 -8.590 11.046 hybrid contribution 0.133 1.402 -0.259 1.432 sum 2.625 -5.081 -8.848 10.535 Atomic orbital electron populations 1.69970 1.04960 1.24963 1.54667 1.24855 0.95196 0.97961 1.01674 0.86337 0.79484 0.84456 0.77184 1.20528 1.22006 1.21736 1.19188 0.93409 0.85223 1.38883 0.91831 1.44236 1.33545 1.00803 1.51838 1.20163 0.85404 1.00377 0.89941 1.21000 0.98031 0.95559 1.02249 1.20969 0.98542 0.98860 0.96641 1.21657 0.93567 1.02239 0.97272 1.22751 0.91818 0.95684 0.88804 0.91293 1.45990 1.21976 1.31760 1.35061 1.20336 0.81195 0.84207 0.83921 1.90617 1.65526 1.27577 1.60142 1.22152 0.96326 1.01202 0.93976 1.22461 0.97398 1.02254 0.92930 1.22352 0.95271 1.00567 0.97875 1.22149 0.97994 1.00322 0.95682 1.22045 0.95605 1.02312 0.94969 1.20789 0.96887 0.88370 0.91869 0.93896 0.89324 0.97738 0.88146 0.95744 0.93340 0.92478 0.90237 0.94403 0.76570 0.88272 0.90873 0.91202 0.91452 0.91705 0.91972 0.91994 0.89899 0.91751 0.94688 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.63 9.43 55.49 0.52 -23.11 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 3 Si 0.89 20.91 29.60 -169.99 -5.03 15.88 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.11 9.63 -15.06 -0.14 -6.26 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.58 -13.78 2.60 -175.09 -0.46 -14.24 16 10 C 0.16 3.74 5.25 -5.21 -0.03 3.71 16 11 C -0.13 -2.67 5.02 -30.19 -0.15 -2.83 16 12 C -0.11 -2.00 5.75 -28.41 -0.16 -2.16 16 13 C -0.11 -1.96 5.23 -27.19 -0.14 -2.10 16 14 C 0.12 2.22 2.91 -65.96 -0.19 2.02 16 15 H 0.07 1.32 7.58 -51.92 -0.39 0.93 16 16 N -0.70 -12.50 5.08 -51.90 -0.26 -12.76 16 17 C 0.52 9.21 6.96 -10.99 -0.08 9.13 16 18 O -0.56 -11.68 15.09 5.55 0.08 -11.60 16 19 C -0.12 -1.63 3.25 -90.12 -0.29 -1.92 16 20 C -0.11 -1.32 6.31 -24.73 -0.16 -1.47 16 21 C -0.12 -1.23 6.83 -25.07 -0.17 -1.41 16 22 C -0.12 -1.31 6.80 -25.61 -0.17 -1.48 16 23 C -0.11 -1.48 6.18 -25.62 -0.16 -1.63 16 24 C 0.15 3.24 4.78 -4.66 -0.02 3.22 16 25 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 26 H 0.09 2.25 6.05 -51.93 -0.31 1.94 16 27 H 0.00 0.10 8.13 -51.93 -0.42 -0.33 16 28 H 0.10 2.36 5.29 -51.93 -0.27 2.08 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.01 6.30 -51.93 -0.33 0.69 16 32 H 0.08 1.62 6.59 -51.93 -0.34 1.28 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.40 6.93 8.44 -40.82 -0.34 6.58 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.25 6.85 -51.93 -0.36 0.89 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.03 0.72 6.90 -51.93 -0.36 0.36 16 45 H 0.04 0.87 7.83 -51.93 -0.41 0.46 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -27.59 338.53 -9.73 -37.32 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.73 Total: 6.65 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.96 Total: -3.24 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.20 Total: -50.11 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.59 -9.73 -37.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034065913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.225 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds