Wall clock time and date at job start Tue Mar 31 2020 03:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00021 * 2 1 4 4 H 1.48498 * 109.47155 * 274.73609 * 3 2 1 5 5 H 1.48498 * 109.47203 * 34.73787 * 3 2 1 6 6 H 1.48502 * 109.47022 * 154.74059 * 3 2 1 7 7 C 1.38821 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00199 * 196.58176 * 7 2 1 9 9 N 1.36942 * 119.99843 * 16.58151 * 7 2 1 10 10 C 1.44574 * 118.64198 * 207.03248 * 9 7 2 11 11 C 1.54862 * 109.59855 * 270.70676 * 10 9 7 12 12 C 1.47094 * 110.32420 * 288.73339 * 11 10 9 13 13 C 1.52568 * 114.32632 * 62.80246 * 12 11 10 14 14 C 1.50882 * 109.35969 * 274.99225 * 13 12 11 15 15 H 1.09000 * 109.36606 * 331.68878 * 14 13 12 16 16 N 1.46507 * 109.26377 * 212.01145 * 14 13 12 17 17 C 1.34771 * 119.99736 * 154.42234 * 16 14 13 18 18 O 1.21281 * 120.00439 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99747 * 179.97438 * 17 16 14 20 20 C 1.53007 * 109.47216 * 180.02562 * 19 17 16 21 21 C 1.53775 * 113.61413 * 274.14025 * 20 19 17 22 22 C 1.53963 * 87.01727 * 220.04758 * 21 20 19 23 23 C 1.53778 * 87.10948 * 25.36320 * 22 21 20 24 24 C 1.47603 * 118.64055 * 27.01352 * 9 7 2 25 25 H 0.97000 * 120.00533 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.44907 * 150.66931 * 10 9 7 27 27 H 1.08994 * 109.44960 * 30.74249 * 10 9 7 28 28 H 1.08999 * 109.32867 * 168.47444 * 11 10 9 29 29 H 1.08998 * 109.19254 * 48.90670 * 11 10 9 30 30 H 1.08996 * 108.51609 * 184.05668 * 12 11 10 31 31 H 1.08996 * 108.51679 * 301.55191 * 12 11 10 32 32 H 1.09007 * 109.49175 * 34.95395 * 13 12 11 33 33 H 1.08999 * 109.49270 * 155.02394 * 13 12 11 34 34 H 0.96993 * 119.99744 * 334.42611 * 16 14 13 35 35 H 1.09002 * 109.47340 * 299.99853 * 19 17 16 36 36 H 1.09003 * 109.46893 * 60.00390 * 19 17 16 37 37 H 1.08997 * 112.84423 * 45.33841 * 20 19 17 38 38 H 1.08997 * 113.61544 * 334.56079 * 21 20 19 39 39 H 1.09001 * 113.61384 * 105.47437 * 21 20 19 40 40 H 1.08998 * 113.53369 * 270.81113 * 22 21 20 41 41 H 1.09004 * 113.73845 * 139.94549 * 22 21 20 42 42 H 1.09005 * 113.61154 * 220.08655 * 23 22 21 43 43 H 1.09002 * 113.61539 * 89.18698 * 23 22 21 44 44 H 1.09000 * 108.94566 * 258.57286 * 24 9 7 45 45 H 1.08994 * 108.95591 * 17.29160 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3975 2.1042 -1.3953 5 1 1.5013 2.6217 0.7978 6 1 3.5942 1.4132 0.5974 7 6 2.0103 -1.2022 0.0005 8 1 3.0565 -1.2216 0.2675 9 7 1.3682 -2.3636 -0.3374 10 6 1.8592 -3.6102 0.2058 11 6 2.9320 -4.2027 -0.7409 12 6 2.3051 -4.7019 -1.9744 13 6 1.6171 -3.6263 -2.8095 14 6 0.2151 -3.4136 -2.2943 15 1 -0.1480 -4.3368 -1.8427 16 7 -0.6588 -3.0421 -3.4100 17 6 -1.9811 -3.2938 -3.3429 18 8 -2.4477 -3.8274 -2.3588 19 6 -2.8800 -2.9112 -4.4903 20 6 -4.3219 -3.3036 -4.1614 21 6 -4.6621 -4.7588 -4.5238 22 6 -6.0259 -4.2344 -5.0091 23 6 -5.3363 -2.8788 -5.2362 24 6 0.2033 -2.2910 -1.2409 25 1 -0.4851 0.8400 -0.0004 26 1 1.0327 -4.3141 0.3035 27 1 2.3001 -3.4303 1.1863 28 1 3.4430 -5.0238 -0.2382 29 1 3.6556 -3.4274 -0.9923 30 1 3.0731 -5.1760 -2.5856 31 1 1.5663 -5.4570 -1.7062 32 1 2.1773 -2.6941 -2.7349 33 1 1.5774 -3.9446 -3.8513 34 1 -0.2856 -2.6151 -4.1968 35 1 -2.8248 -1.8346 -4.6519 36 1 -2.5585 -3.4310 -5.3928 37 1 -4.6158 -3.0254 -3.1494 38 1 -4.0420 -5.1664 -5.3222 39 1 -4.7299 -5.4196 -3.6596 40 1 -6.7864 -4.2121 -4.2286 41 1 -6.3757 -4.7057 -5.9276 42 1 -5.9475 -2.0240 -4.9463 43 1 -4.9007 -2.7715 -6.2296 44 1 -0.7088 -2.3702 -0.6493 45 1 0.2109 -1.3281 -1.7516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034145152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:12 Heat of formation + Delta-G solvation = -10.341855 kcal Electronic energy + Delta-G solvation = -22999.595718 eV Core-core repulsion = 19824.624625 eV Total energy + Delta-G solvation = -3174.971093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.79256 -38.49468 -37.34567 -34.28381 -33.48682 -31.05816 -30.68063 -29.23518 -26.01673 -25.60201 -24.33089 -23.82366 -22.59103 -20.27775 -19.73851 -19.31014 -19.16731 -16.66319 -16.58718 -15.81637 -15.47152 -15.26884 -14.65256 -14.44618 -14.06334 -13.99034 -13.41716 -13.17321 -12.78932 -12.62865 -12.47138 -12.40052 -12.06046 -11.81061 -11.39827 -11.28852 -11.11200 -10.97924 -10.71525 -10.61210 -10.39949 -10.30584 -10.21326 -10.17128 -10.11189 -9.92961 -9.75966 -9.48645 -9.25779 -8.46993 -8.33411 -6.61374 -5.74052 -3.19250 3.13132 3.37141 3.44914 3.46466 3.64822 4.51892 4.61024 4.64095 4.72399 4.86579 5.18015 5.30013 5.35677 5.39217 5.48955 5.52820 5.65689 5.66501 5.68272 5.72408 5.77754 5.84934 5.94189 5.97580 6.06170 6.09235 6.26045 6.29047 6.36331 6.51539 6.54924 6.65687 6.68812 6.70124 6.83776 6.95951 7.04357 7.13598 7.42840 7.78791 7.86161 8.03899 8.50057 8.74698 9.26825 9.94154 10.39973 11.32127 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.004779 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.053240 B = 5857.119456 C = 6935.283777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.898 3.102 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.155 3.845 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.119 3.881 15 H 0.072 0.928 16 N -0.722 5.722 17 C 0.510 3.490 18 O -0.539 6.539 19 C -0.132 4.132 20 C -0.092 4.092 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.139 4.139 24 C 0.176 3.824 25 H 0.252 0.748 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.393 0.607 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.031 0.969 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 -7.596 -12.311 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.027 3.973 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.090 0.910 16 N -0.372 5.372 17 C 0.296 3.704 18 O -0.416 6.416 19 C -0.172 4.172 20 C -0.111 4.111 21 C -0.171 4.171 22 C -0.180 4.180 23 C -0.176 4.176 24 C 0.050 3.950 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.227 0.773 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.049 0.951 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.144 -7.859 -11.560 14.895 hybrid contribution 0.703 1.211 -0.448 1.471 sum -4.441 -6.647 -12.009 14.426 Atomic orbital electron populations 1.70107 1.05178 1.25317 1.53666 1.25058 0.95189 0.98340 1.00758 0.86336 0.79270 0.84061 0.77497 1.21600 1.21825 1.20376 1.19218 0.92693 0.85076 1.42002 0.91630 1.43542 1.34201 1.02007 1.51118 1.20730 0.94029 0.88225 0.94364 1.21500 1.00332 0.99684 0.97266 1.20214 0.99012 0.97462 0.96919 1.21278 0.95872 1.00746 0.97419 1.21724 0.88415 1.00537 0.87908 0.91014 1.46193 1.07710 1.62517 1.20806 1.20567 0.82672 0.78630 0.88531 1.90683 1.74712 1.42830 1.33360 1.21694 0.94969 1.03112 0.97425 1.22308 0.92345 0.96500 0.99944 1.22952 0.96490 0.96738 1.00926 1.22826 0.97028 0.97106 1.01065 1.22981 0.98123 0.97451 0.99091 1.21279 0.89429 0.95087 0.89238 0.93737 0.94983 0.93595 0.93461 0.92096 0.93804 0.93294 0.90170 0.93203 0.77338 0.88983 0.89453 0.88150 0.90607 0.91257 0.90322 0.91801 0.91521 0.90271 0.95103 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 11.11 55.49 0.62 -25.78 16 2 C 0.01 0.15 4.84 -17.43 -0.08 0.07 16 3 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.26 -7.07 9.43 -15.05 -0.14 -7.21 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.63 2.27 -172.10 -0.39 -15.02 16 10 C 0.15 3.30 5.65 -4.09 -0.02 3.28 16 11 C -0.15 -2.62 5.74 -28.58 -0.16 -2.78 16 12 C -0.10 -1.60 5.15 -29.79 -0.15 -1.75 16 13 C -0.12 -1.96 5.06 -28.02 -0.14 -2.10 16 14 C 0.12 2.31 2.28 -68.50 -0.16 2.15 16 15 H 0.07 1.51 6.74 -51.93 -0.35 1.16 16 16 N -0.72 -11.82 4.96 -54.36 -0.27 -12.09 16 17 C 0.51 8.64 7.80 -10.99 -0.09 8.55 16 18 O -0.54 -11.43 15.44 5.56 0.09 -11.34 16 19 C -0.13 -1.61 5.52 -27.88 -0.15 -1.76 16 20 C -0.09 -1.14 3.11 -89.81 -0.28 -1.42 16 21 C -0.13 -1.52 7.65 -25.83 -0.20 -1.71 16 22 C -0.14 -1.37 8.09 -25.82 -0.21 -1.58 16 23 C -0.14 -1.35 7.64 -25.92 -0.20 -1.55 16 24 C 0.18 4.29 4.26 -2.94 -0.01 4.28 16 25 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.79 7.36 -51.93 -0.38 0.41 16 32 H 0.08 1.54 7.48 -51.92 -0.39 1.15 16 33 H 0.05 0.72 7.94 -51.93 -0.41 0.30 16 34 H 0.39 5.22 8.55 -40.82 -0.35 4.87 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 37 H 0.10 1.48 7.73 -51.93 -0.40 1.08 16 38 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 45 H 0.07 1.97 6.38 -51.93 -0.33 1.64 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -31.42 348.40 -9.77 -41.20 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.04 Total: 4.71 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.00 Total: -3.52 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.04 Total: -52.90 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.42 -9.77 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034145152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.855 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds