Wall clock time and date at job start Tue Mar 31 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99697 * 2 1 4 4 H 1.48501 * 109.47028 * 274.74053 * 3 2 1 5 5 H 1.48497 * 109.47066 * 34.73881 * 3 2 1 6 6 H 1.48505 * 109.46896 * 154.73735 * 3 2 1 7 7 C 1.38807 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99886 * 196.56763 * 7 2 1 9 9 N 1.36936 * 120.00254 * 16.57427 * 7 2 1 10 10 C 1.44574 * 118.64436 * 207.04865 * 9 7 2 11 11 C 1.54866 * 109.60104 * 270.71946 * 10 9 7 12 12 C 1.47093 * 110.32390 * 288.73556 * 11 10 9 13 13 C 1.52567 * 114.32225 * 62.79831 * 12 11 10 14 14 H 1.08994 * 109.49232 * 34.98109 * 13 12 11 15 15 N 1.46506 * 109.48573 * 155.02303 * 13 12 11 16 16 C 1.34769 * 120.00036 * 205.00273 * 15 13 12 17 17 O 1.21286 * 120.00043 * 359.97438 * 16 15 13 18 18 C 1.50700 * 120.00361 * 180.27732 * 16 15 13 19 19 C 1.54269 * 110.02732 * 297.62894 * 18 16 15 20 20 C 1.54969 * 104.15926 * 217.13243 * 19 18 16 21 21 C 1.54890 * 102.77649 * 37.88814 * 20 19 18 22 22 C 1.53870 * 110.03638 * 180.41264 * 18 16 15 23 23 C 1.50880 * 109.36177 * 274.98595 * 13 12 11 24 24 C 1.47605 * 118.64051 * 27.06292 * 9 7 2 25 25 H 0.97000 * 120.00290 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.45532 * 150.68013 * 10 9 7 27 27 H 1.09006 * 109.45130 * 30.76095 * 10 9 7 28 28 H 1.08998 * 109.32899 * 168.47074 * 11 10 9 29 29 H 1.09007 * 109.18563 * 48.90773 * 11 10 9 30 30 H 1.08998 * 108.50512 * 301.54765 * 12 11 10 31 31 H 1.09001 * 108.51121 * 184.05349 * 12 11 10 32 32 H 0.96996 * 119.99970 * 24.99587 * 15 13 12 33 33 H 1.09000 * 110.01761 * 59.01214 * 18 16 15 34 34 H 1.08999 * 110.48953 * 335.78208 * 19 18 16 35 35 H 1.09007 * 110.48585 * 98.43003 * 19 18 16 36 36 H 1.08995 * 110.72351 * 279.57657 * 20 19 18 37 37 H 1.09000 * 110.92299 * 156.29935 * 20 19 18 38 38 H 1.08999 * 110.48632 * 203.40182 * 21 20 19 39 39 H 1.09009 * 110.59644 * 80.81686 * 21 20 19 40 40 H 1.09003 * 110.03284 * 238.56332 * 22 18 16 41 41 H 1.08998 * 110.03527 * 359.94788 * 22 18 16 42 42 H 1.08996 * 109.36703 * 212.08453 * 23 13 12 43 43 H 1.09002 * 109.36308 * 331.69761 * 23 13 12 44 44 H 1.09001 * 108.94699 * 258.55513 * 24 9 7 45 45 H 1.08992 * 108.94862 * 17.18641 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3974 2.1043 -1.3953 5 1 1.5012 2.6217 0.7978 6 1 3.5942 1.4134 0.5975 7 6 2.0103 -1.2021 0.0005 8 1 3.0567 -1.2213 0.2673 9 7 1.3683 -2.3635 -0.3372 10 6 1.8593 -3.6100 0.2063 11 6 2.9324 -4.2026 -0.7400 12 6 2.3061 -4.7020 -1.9737 13 6 1.6183 -3.6264 -2.8090 14 1 2.1785 -2.6945 -2.7346 15 7 1.5654 -4.0545 -4.2092 16 6 1.4850 -3.1359 -5.1921 17 8 1.4560 -1.9549 -4.9175 18 6 1.4243 -3.5763 -6.6320 19 6 2.7154 -4.3322 -7.0081 20 6 2.9991 -3.8951 -8.4676 21 6 2.5951 -2.3998 -8.4620 22 6 1.3475 -2.3484 -7.5561 23 6 0.2160 -3.4138 -2.2944 24 6 0.2039 -2.2912 -1.2415 25 1 -0.4850 0.8400 0.0004 26 1 1.0328 -4.3141 0.3039 27 1 2.2997 -3.4299 1.1870 28 1 3.4433 -5.0235 -0.2369 29 1 3.6561 -3.4271 -0.9911 30 1 1.5672 -5.4571 -1.7054 31 1 3.0744 -5.1761 -2.5845 32 1 1.5883 -4.9989 -4.4288 33 1 0.5570 -4.2173 -6.7898 34 1 3.5357 -4.0350 -6.3548 35 1 2.5559 -5.4093 -6.9559 36 1 2.3814 -4.4594 -9.1662 37 1 4.0557 -4.0090 -8.7096 38 1 2.3484 -2.0675 -9.4704 39 1 3.3950 -1.7881 -8.0447 40 1 0.4433 -2.3939 -8.1631 41 1 1.3532 -1.4339 -6.9631 42 1 -0.4356 -3.1387 -3.1237 43 1 -0.1471 -4.3371 -1.8428 44 1 -0.7085 -2.3704 -0.6505 45 1 0.2110 -1.3278 -1.7512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052143621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:49 Heat of formation + Delta-G solvation = -35.775802 kcal Electronic energy + Delta-G solvation = -23305.522127 eV Core-core repulsion = 20129.448135 eV Total energy + Delta-G solvation = -3176.073992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.05461 -38.08816 -36.72362 -34.59327 -32.81644 -31.04785 -30.51718 -28.98535 -28.68022 -25.90742 -24.01649 -23.24399 -21.68892 -20.78190 -20.15380 -19.20878 -19.11822 -17.18637 -16.56997 -15.95045 -15.61534 -15.01202 -14.77818 -14.41131 -13.99362 -13.74155 -13.48320 -13.21185 -13.12653 -12.85661 -12.38337 -11.87548 -11.76484 -11.58625 -11.35107 -11.24250 -11.16538 -11.03301 -10.90566 -10.78264 -10.72050 -10.55619 -10.31967 -10.15176 -10.01384 -9.89100 -9.65005 -9.51782 -9.29676 -8.62619 -8.27706 -6.57004 -5.68300 -3.12232 2.99274 3.46952 3.50771 3.53929 3.54714 4.40094 4.51537 4.60263 4.69566 5.14711 5.23219 5.25824 5.33800 5.35285 5.42845 5.50868 5.53722 5.56922 5.62571 5.69718 5.79288 5.80561 5.98282 6.04965 6.07843 6.16368 6.21203 6.25440 6.32912 6.41308 6.49504 6.54032 6.65937 6.76143 6.83367 6.90253 7.07318 7.13979 7.52113 7.79838 7.88644 7.93317 8.57702 8.62617 9.33910 10.01136 10.45808 11.39318 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.005188 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.593535 B = 5395.892790 C = 6266.217737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.106 4.106 13 C 0.153 3.847 14 H 0.101 0.899 15 N -0.728 5.728 16 C 0.511 3.489 17 O -0.526 6.526 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.146 4.146 24 C 0.183 3.817 25 H 0.252 0.748 26 H 0.031 0.969 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.390 0.610 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.025 0.975 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -12.476 -14.133 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.728 3.272 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.029 3.971 11 C -0.187 4.187 12 C -0.144 4.144 13 C 0.050 3.950 14 H 0.119 0.881 15 N -0.379 5.379 16 C 0.296 3.704 17 O -0.402 6.402 18 C -0.135 4.135 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.186 4.186 24 C 0.057 3.943 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.223 0.777 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.439 -11.466 -13.896 18.341 hybrid contribution 0.338 0.298 -0.156 0.477 sum 3.777 -11.168 -14.051 18.342 Atomic orbital electron populations 1.70062 1.05262 1.25352 1.53935 1.25003 0.95200 0.98326 1.00506 0.86346 0.79161 0.84043 0.77658 1.21383 1.21864 1.20442 1.19178 0.92613 0.85179 1.42020 0.91798 1.43660 1.34185 1.01883 1.51451 1.20690 0.93817 0.88354 0.94279 1.21453 1.00533 0.99907 0.96772 1.20559 0.99181 0.97466 0.97157 1.20515 0.97613 0.99197 0.77694 0.88059 1.46316 1.75327 1.09060 1.07152 1.20502 0.76222 0.86394 0.87305 1.90748 1.48578 1.17078 1.83785 1.21952 0.99958 0.98948 0.92641 1.22363 0.96398 0.99371 0.97099 1.22504 1.01071 0.96357 0.96136 1.22363 0.98044 0.96338 0.99430 1.22164 0.97887 0.98832 0.96945 1.22423 0.95495 1.00738 0.99926 1.20911 0.88898 0.95649 0.88799 0.93761 0.95050 0.93596 0.93062 0.91965 0.92909 0.93514 0.77717 0.88833 0.91064 0.91126 0.91448 0.91513 0.91714 0.91497 0.91700 0.88973 0.92710 0.93669 0.95697 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 11.11 55.49 0.62 -26.48 16 2 C 0.01 0.24 4.84 -17.43 -0.08 0.16 16 3 Si 0.90 22.80 29.58 -169.99 -5.03 17.77 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.26 -7.30 9.43 -15.06 -0.14 -7.44 16 8 H 0.06 1.77 7.88 -52.48 -0.41 1.36 16 9 N -0.59 -14.89 2.27 -172.11 -0.39 -15.28 16 10 C 0.16 3.27 5.65 -4.09 -0.02 3.24 16 11 C -0.15 -2.54 5.74 -28.58 -0.16 -2.71 16 12 C -0.11 -1.65 4.69 -29.79 -0.14 -1.79 16 13 C 0.15 2.79 2.06 -69.21 -0.14 2.64 16 14 H 0.10 2.34 6.92 -51.93 -0.36 1.98 16 15 N -0.73 -10.70 4.87 -55.06 -0.27 -10.97 16 16 C 0.51 8.24 6.82 -10.99 -0.07 8.16 16 17 O -0.53 -11.30 14.87 5.55 0.08 -11.22 16 18 C -0.11 -1.32 3.29 -90.65 -0.30 -1.62 16 19 C -0.11 -1.08 6.30 -25.03 -0.16 -1.24 16 20 C -0.12 -1.05 6.91 -24.69 -0.17 -1.22 16 21 C -0.12 -1.25 6.83 -25.07 -0.17 -1.42 16 22 C -0.12 -1.45 6.40 -25.61 -0.16 -1.61 16 23 C -0.15 -2.90 5.39 -27.32 -0.15 -3.04 16 24 C 0.18 4.57 4.67 -2.96 -0.01 4.55 16 25 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 27 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.76 7.36 -51.93 -0.38 0.38 16 31 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 32 H 0.39 4.33 8.59 -40.82 -0.35 3.98 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.77 7.85 -51.93 -0.41 0.36 16 35 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.41 6.39 -51.93 -0.33 1.07 16 42 H 0.05 1.10 7.85 -51.93 -0.41 0.69 16 43 H 0.04 0.82 7.32 -51.93 -0.38 0.44 16 44 H 0.02 0.67 8.03 -51.93 -0.42 0.25 16 45 H 0.08 2.19 6.40 -51.93 -0.33 1.85 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -32.21 343.32 -9.68 -41.89 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.97 Total: 2.45 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.89 Total: -3.33 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.04 Total: -52.73 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.21 -9.68 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052143621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.114 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds