Wall clock time and date at job start Tue Mar 31 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47397 * 269.99910 * 3 2 1 5 5 H 1.48510 * 109.46813 * 29.99739 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99357 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47131 * 35.00777 * 10 9 7 12 12 C 1.52998 * 109.47262 * 275.00203 * 10 9 7 13 13 C 1.52996 * 109.47019 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47270 * 59.99765 * 13 12 10 15 15 C 1.52998 * 109.47292 * 300.00068 * 14 13 12 16 16 C 1.52996 * 109.47048 * 60.00174 * 15 14 13 17 17 H 1.08994 * 109.47414 * 59.99906 * 16 15 14 18 18 N 1.46501 * 109.47264 * 180.02562 * 16 15 14 19 19 C 1.34774 * 119.99987 * 274.99912 * 18 16 15 20 20 O 1.21288 * 119.99785 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00531 * 179.97438 * 19 18 16 22 22 C 1.52999 * 109.47570 * 180.02562 * 21 19 18 23 23 C 1.53778 * 113.61206 * 274.13795 * 22 21 19 24 24 C 1.53960 * 87.01788 * 220.04676 * 23 22 21 25 25 C 1.53781 * 87.11131 * 25.36324 * 24 23 22 26 26 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 28 28 H 1.09002 * 109.46901 * 299.99917 * 12 10 9 29 29 H 1.09001 * 109.47093 * 60.00233 * 12 10 9 30 30 H 1.09002 * 109.46968 * 299.99571 * 13 12 10 31 31 H 1.09007 * 109.47060 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46987 * 180.02562 * 14 13 12 33 33 H 1.09007 * 109.46959 * 60.00323 * 14 13 12 34 34 H 1.08994 * 109.47090 * 299.99882 * 15 14 13 35 35 H 1.09001 * 109.47093 * 179.97438 * 15 14 13 36 36 H 0.96997 * 120.00050 * 94.99754 * 18 16 15 37 37 H 1.09008 * 109.46719 * 299.99925 * 21 19 18 38 38 H 1.09004 * 109.47254 * 59.99237 * 21 19 18 39 39 H 1.09000 * 112.84704 * 45.33070 * 22 21 19 40 40 H 1.09006 * 113.61442 * 334.56077 * 23 22 21 41 41 H 1.08998 * 113.61804 * 105.47053 * 23 22 21 42 42 H 1.09001 * 113.53447 * 270.80857 * 24 23 22 43 43 H 1.09001 * 113.66679 * 139.92771 * 24 23 22 44 44 H 1.09001 * 113.61382 * 220.09381 * 25 24 23 45 45 H 1.09002 * 113.69333 * 89.19676 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5901 12 6 2.4221 -4.0356 -1.4364 13 6 3.1865 -5.3609 -1.4364 14 6 2.3089 -6.4559 -0.8270 15 6 1.9449 -6.0771 0.6100 16 6 1.1804 -4.7519 0.6100 17 1 0.2698 -4.8577 0.0204 18 7 0.8324 -4.3888 1.9860 19 6 -0.2857 -4.8852 2.5516 20 8 -1.0039 -5.6321 1.9214 21 6 -0.6434 -4.5122 3.9672 22 6 -1.9482 -5.2061 4.3633 23 6 -3.2091 -4.4259 3.9556 24 6 -3.8051 -4.8369 5.3144 25 6 -2.3592 -4.9577 5.8242 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0039 28 1 1.5114 -4.1419 -2.0259 29 1 3.0470 -3.2552 -1.8707 30 1 4.0972 -5.2550 -0.8469 31 1 3.4454 -5.6310 -2.4603 32 1 2.8537 -7.4000 -0.8266 33 1 1.3982 -6.5618 -1.4167 34 1 2.8555 -5.9713 1.1995 35 1 1.3193 -6.8571 1.0440 36 1 1.4067 -3.7912 2.4899 37 1 0.1545 -4.8289 4.6390 38 1 -0.7701 -3.4319 4.0374 39 1 -1.9730 -6.2571 4.0754 40 1 -3.0457 -3.3526 3.8573 41 1 -3.7313 -4.8557 3.1009 42 1 -4.3389 -5.7868 5.2861 43 1 -4.3744 -4.0444 5.8002 44 1 -2.1962 -5.8163 6.4756 45 1 -1.9618 -4.0309 6.2380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085159729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:34 Heat of formation + Delta-G solvation = -35.796971 kcal Electronic energy + Delta-G solvation = -22779.990313 eV Core-core repulsion = 19603.915403 eV Total energy + Delta-G solvation = -3176.074910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.86916 -38.63687 -37.39280 -34.03076 -33.61211 -31.15312 -30.67124 -28.93492 -27.54142 -25.51751 -23.85091 -23.61799 -21.84389 -21.03936 -19.97835 -19.38058 -19.22321 -17.24440 -16.56132 -15.96770 -15.52304 -14.98339 -14.72734 -14.40737 -14.05235 -13.85704 -13.62149 -13.35820 -12.94570 -12.76303 -12.62885 -12.36679 -12.07412 -12.03262 -11.74911 -11.33409 -11.08239 -10.92013 -10.80830 -10.74428 -10.56925 -10.53410 -10.31455 -10.23227 -10.17016 -10.10290 -9.74086 -9.62757 -9.31197 -8.91239 -8.48284 -6.99044 -5.78972 -3.08524 3.10793 3.40351 3.45763 3.47448 3.65155 4.54676 4.66071 4.70686 4.79912 4.94500 5.08796 5.13765 5.22833 5.34859 5.48943 5.53155 5.55572 5.63322 5.68354 5.74341 5.79272 5.82389 5.86528 5.90557 5.91997 5.98182 5.99942 6.02748 6.13218 6.20452 6.34971 6.35380 6.47065 6.51059 6.54932 6.59938 6.61470 6.88246 6.95978 7.13284 7.66429 8.03599 8.38328 8.71928 9.50055 10.07037 10.42400 11.42991 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.005708 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.898714 B = 4903.862480 C = 6909.078057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.141 3.859 17 H 0.082 0.918 18 N -0.710 5.710 19 C 0.514 3.486 20 O -0.552 6.552 21 C -0.133 4.133 22 C -0.091 4.091 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.139 4.139 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -11.973 7.957 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.068 0.932 12 C -0.174 4.174 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.035 3.965 17 H 0.100 0.900 18 N -0.359 5.359 19 C 0.301 3.699 20 O -0.430 6.430 21 C -0.173 4.173 22 C -0.110 4.110 23 C -0.171 4.171 24 C -0.181 4.181 25 C -0.176 4.176 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.257 -12.329 7.535 14.451 hybrid contribution 0.491 1.383 0.083 1.470 sum 0.748 -10.946 7.618 13.357 Atomic orbital electron populations 1.69673 1.05077 1.25606 1.57387 1.24731 0.95437 0.97590 1.02961 0.86238 0.78622 0.84053 0.77526 1.21777 1.21857 1.20813 1.19207 0.90895 0.84041 1.42988 0.91238 1.42418 1.05810 0.99473 1.88504 1.20465 0.93922 0.85847 0.93527 0.93244 1.22223 0.99916 0.95495 0.99802 1.21578 0.98508 0.95712 0.99923 1.21473 0.99868 0.97964 0.95885 1.21863 0.99921 0.97398 0.97037 1.21252 0.98843 0.93802 0.82559 0.89986 1.45946 1.25431 1.49312 1.15238 1.20580 0.80410 0.80065 0.88844 1.90644 1.50724 1.37007 1.64630 1.21697 0.98996 1.02703 0.93945 1.22280 0.92904 1.00498 0.95281 1.22967 0.96747 1.00374 0.97041 1.22828 0.96241 1.01380 0.97621 1.22979 0.96677 1.01752 0.96191 0.93530 0.78142 0.92503 0.91669 0.92421 0.92730 0.92469 0.92010 0.92155 0.92033 0.76382 0.89343 0.88678 0.88595 0.90092 0.91303 0.90498 0.91699 0.91772 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.26 4.95 -53.42 -0.26 -17.53 16 10 C 0.17 3.27 2.29 -67.92 -0.16 3.12 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 13 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 14 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 15 C -0.12 -1.78 5.49 -26.73 -0.15 -1.93 16 16 C 0.14 2.42 1.98 -67.93 -0.13 2.29 16 17 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 18 N -0.71 -11.61 4.91 -53.81 -0.26 -11.88 16 19 C 0.51 8.53 7.79 -10.99 -0.09 8.45 16 20 O -0.55 -10.85 15.45 5.55 0.09 -10.77 16 21 C -0.13 -1.73 5.52 -27.89 -0.15 -1.88 16 22 C -0.09 -1.14 3.11 -89.81 -0.28 -1.42 16 23 C -0.13 -1.75 7.65 -25.83 -0.20 -1.94 16 24 C -0.14 -1.51 8.09 -25.82 -0.21 -1.72 16 25 C -0.14 -1.41 7.65 -25.92 -0.20 -1.61 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 6.21 8.60 -40.82 -0.35 5.86 16 37 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 38 H 0.09 1.24 7.88 -51.93 -0.41 0.83 16 39 H 0.10 1.31 7.73 -51.93 -0.40 0.91 16 40 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -30.08 357.26 -9.79 -39.88 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -8.17 Total: 14.41 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.27 Total: -9.52 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.20 Total: -56.23 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.08 -9.79 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085159729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.079 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds