Wall clock time and date at job start Tue Mar 31 2020 02:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48497 * 109.47272 * 270.00301 * 3 2 1 5 5 H 1.48504 * 109.47143 * 30.00110 * 3 2 1 6 6 H 1.48500 * 109.47016 * 150.00442 * 3 2 1 7 7 C 1.38811 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00063 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99564 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99616 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85296 * 23.80332 * 10 9 7 12 12 C 1.53781 * 113.61334 * 155.00088 * 10 9 7 13 13 C 1.53786 * 87.17350 * 89.07333 * 12 10 9 14 14 H 1.09000 * 113.60973 * 270.92699 * 13 12 10 15 15 C 1.52990 * 113.61464 * 140.02626 * 13 12 10 16 16 N 1.46497 * 109.47171 * 174.99989 * 15 13 12 17 17 C 1.34777 * 120.00242 * 179.97438 * 16 15 13 18 18 O 1.21281 * 119.99992 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.99937 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47468 * 300.00027 * 19 17 16 21 21 C 1.52990 * 109.47287 * 179.97438 * 20 19 17 22 22 C 1.52999 * 109.47270 * 60.00511 * 21 20 19 23 23 C 1.53001 * 109.47031 * 300.00048 * 22 21 20 24 24 C 1.52997 * 109.47160 * 59.99583 * 23 22 21 25 25 C 1.53781 * 113.61146 * 252.49565 * 10 9 7 26 26 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00213 * 359.97438 * 9 7 2 28 28 H 1.09002 * 113.61445 * 203.66333 * 12 10 9 29 29 H 1.09002 * 113.61408 * 334.48063 * 12 10 9 30 30 H 1.09007 * 109.47036 * 294.99322 * 15 13 12 31 31 H 1.08994 * 109.47734 * 54.99728 * 15 13 12 32 32 H 0.97003 * 120.00176 * 359.97438 * 16 15 13 33 33 H 1.09000 * 109.46854 * 60.00842 * 19 17 16 34 34 H 1.08999 * 109.47148 * 300.00728 * 20 19 17 35 35 H 1.09006 * 109.46717 * 60.00282 * 20 19 17 36 36 H 1.08999 * 109.47675 * 300.00471 * 21 20 19 37 37 H 1.09005 * 109.47513 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47385 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.47168 * 59.99766 * 22 21 20 40 40 H 1.09003 * 109.46914 * 299.99873 * 23 22 21 41 41 H 1.08998 * 109.47511 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47209 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.46970 * 60.00325 * 24 23 22 44 44 H 1.09005 * 113.61471 * 25.43638 * 25 10 9 45 45 H 1.09003 * 113.61469 * 156.33416 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4709 -0.0022 11 1 3.5276 -3.2967 -0.4079 12 6 5.5258 -2.3655 -0.5981 13 6 6.0151 -2.0229 0.8190 14 1 5.9894 -0.9567 1.0438 15 6 7.3505 -2.6758 1.1807 16 7 7.7881 -2.1972 2.4943 17 6 8.9465 -2.6406 3.0216 18 8 9.6269 -3.4355 2.4083 19 6 9.3969 -2.1477 4.3727 20 6 9.5680 -0.6279 4.3302 21 6 10.0246 -0.1276 5.7020 22 6 11.3596 -0.7809 6.0648 23 6 11.1887 -2.3008 6.1072 24 6 10.7320 -2.8012 4.7354 25 6 4.7876 -2.7933 1.3411 26 1 -0.4850 0.8400 0.0004 27 1 3.8645 -0.3621 -0.0014 28 1 5.9118 -3.3121 -0.9765 29 1 5.6399 -1.5473 -1.3093 30 1 7.2292 -3.7587 1.2106 31 1 8.0977 -2.4144 0.4315 32 1 7.2442 -1.5611 2.9847 33 1 8.6497 -2.4085 5.1221 34 1 10.3151 -0.3672 3.5807 35 1 8.6167 -0.1624 4.0722 36 1 9.2771 -0.3883 6.4512 37 1 10.1460 0.9553 5.6719 38 1 11.6852 -0.4241 7.0419 39 1 12.1072 -0.5202 5.3156 40 1 10.4411 -2.5615 6.8564 41 1 12.1399 -2.7664 6.3652 42 1 10.6098 -3.8839 4.7658 43 1 11.4796 -2.5404 3.9862 44 1 4.3062 -2.3197 2.1968 45 1 4.9718 -3.8569 1.4931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086294750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:33 Heat of formation + Delta-G solvation = -36.088372 kcal Electronic energy + Delta-G solvation = -21914.348144 eV Core-core repulsion = 18738.260599 eV Total energy + Delta-G solvation = -3176.087546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.34495 -38.87469 -37.69219 -34.77122 -33.27816 -31.56568 -31.02897 -30.59040 -27.57576 -25.19665 -24.08186 -23.20373 -22.80587 -21.71848 -20.63519 -19.89866 -18.61329 -17.70421 -17.20132 -16.18862 -15.60307 -15.37415 -14.83267 -14.56631 -14.42759 -14.40541 -14.06473 -13.67782 -13.45418 -12.90253 -12.84408 -12.61827 -12.53360 -12.42221 -12.06714 -11.66017 -11.51537 -11.45042 -11.38890 -10.95951 -10.93694 -10.74495 -10.53654 -10.43427 -10.27857 -10.14831 -9.77664 -9.66496 -9.50480 -9.04880 -8.94014 -7.33927 -5.83090 -3.19385 2.58499 3.14884 3.31140 3.34495 3.40252 4.32783 4.37074 4.41328 4.52598 4.84141 4.86122 4.87519 4.92548 4.95490 5.07888 5.08417 5.15803 5.19396 5.28832 5.36453 5.41104 5.49049 5.51064 5.69859 5.72657 5.74210 5.77863 5.83502 5.85065 5.88970 5.93864 5.99805 6.10253 6.12663 6.20871 6.35567 6.47372 6.59304 6.71955 6.86508 7.46692 7.94844 8.17926 8.36644 9.14310 9.86513 10.05788 11.35055 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022708 B = 0.003280 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.730701 B = 8533.714877 C = 9352.324387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.172 3.828 11 H 0.071 0.929 12 C -0.149 4.149 13 C -0.124 4.124 14 H 0.089 0.911 15 C 0.131 3.869 16 N -0.725 5.725 17 C 0.514 3.486 18 O -0.546 6.546 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.098 4.098 25 C -0.166 4.166 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.401 0.599 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.188 -2.419 11.152 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 H 0.089 0.911 12 C -0.188 4.188 13 C -0.142 4.142 14 H 0.107 0.893 15 C 0.007 3.993 16 N -0.376 5.376 17 C 0.300 3.700 18 O -0.424 6.424 19 C -0.128 4.128 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.136 4.136 25 C -0.207 4.207 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.235 0.765 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.379 -3.043 10.673 24.980 hybrid contribution 0.235 1.597 0.276 1.638 sum 22.614 -1.446 10.949 25.167 Atomic orbital electron populations 1.69697 1.05100 1.25911 1.57207 1.24684 0.95255 0.97225 1.01895 0.86556 0.79110 0.85007 0.77848 1.21000 1.21651 1.20433 1.19116 0.80406 0.94851 1.43293 0.89020 1.42517 1.03956 1.01614 1.88928 1.21002 0.90106 0.89887 0.92925 0.91055 1.23459 0.98762 1.01580 0.95035 1.22794 0.92717 1.00013 0.98718 0.89282 1.21446 0.95552 0.98812 0.83453 1.46114 1.23090 1.47320 1.21103 1.20686 0.80677 0.80966 0.87682 1.90682 1.54644 1.34464 1.62572 1.21367 0.99704 0.96998 0.94759 1.21535 1.02103 0.92965 0.98311 1.21528 0.97433 1.00049 0.96570 1.21567 0.97482 0.95466 1.01424 1.21566 1.01358 0.95689 0.97149 1.21334 0.95220 1.00219 0.96859 1.23904 0.96468 0.98799 1.01526 0.92963 0.80534 0.90002 0.91463 0.91487 0.91900 0.76455 0.88572 0.91372 0.91348 0.91656 0.91609 0.91989 0.91931 0.91901 0.91725 0.91285 0.91262 0.91356 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.86 13.97 55.49 0.78 -28.08 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.59 27.73 -169.99 -4.71 16.88 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 7 C -0.25 -6.82 10.45 -15.06 -0.16 -6.97 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.73 -16.69 5.11 -52.63 -0.27 -16.96 16 10 C 0.17 3.17 4.56 -67.11 -0.31 2.86 16 11 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.15 -2.20 7.38 -25.92 -0.19 -2.39 16 13 C -0.12 -1.70 3.64 -89.67 -0.33 -2.03 16 14 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 15 C 0.13 1.65 5.52 -4.05 -0.02 1.63 16 16 N -0.73 -8.29 5.45 -60.30 -0.33 -8.62 16 17 C 0.51 6.33 7.16 -10.98 -0.08 6.25 16 18 O -0.55 -8.78 15.98 5.56 0.09 -8.69 16 19 C -0.11 -0.97 2.52 -91.77 -0.23 -1.20 16 20 C -0.11 -0.87 5.10 -26.74 -0.14 -1.01 16 21 C -0.12 -0.79 5.92 -26.74 -0.16 -0.94 16 22 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 23 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 24 C -0.10 -0.89 4.49 -26.73 -0.12 -1.01 16 25 C -0.17 -2.59 7.44 -25.78 -0.19 -2.78 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.36 8.09 5.76 -40.82 -0.24 7.86 16 28 H 0.08 1.06 8.10 -51.93 -0.42 0.63 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.40 3.90 7.89 -40.82 -0.32 3.58 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.50 7.57 -51.93 -0.39 0.11 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.69 8.10 -51.93 -0.42 0.26 16 43 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -31.93 353.97 -9.56 -41.49 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.12 Total: 8.13 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.33 Total: -9.48 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.18 Total: -53.66 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.93 -9.56 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086294750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.400 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds