Wall clock time and date at job start Tue Mar 31 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48501 * 109.46605 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47103 * 299.99953 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.00218 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21280 * 120.00276 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00045 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47314 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47153 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47207 * 294.99747 * 17 16 15 19 19 C 1.52995 * 109.47210 * 179.97438 * 18 17 16 20 20 C 1.53000 * 109.46955 * 60.00271 * 19 18 17 21 21 C 1.52999 * 109.47166 * 300.00206 * 20 19 18 22 22 C 1.53000 * 109.46567 * 175.00043 * 17 16 15 23 23 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 24 24 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 26 26 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 27 27 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 28 28 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 29 29 H 1.09004 * 109.46895 * 299.99896 * 15 13 12 30 30 H 1.08997 * 109.47176 * 60.00031 * 15 13 12 31 31 H 1.08994 * 109.46940 * 299.99938 * 16 15 13 32 32 H 1.08997 * 109.47044 * 59.99864 * 16 15 13 33 33 H 1.09000 * 109.46709 * 55.00294 * 17 16 15 34 34 H 1.09000 * 109.47570 * 300.00451 * 18 17 16 35 35 H 1.09000 * 109.46885 * 60.00078 * 18 17 16 36 36 H 1.09000 * 109.47353 * 300.00744 * 19 18 17 37 37 H 1.08997 * 109.47172 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.47374 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47230 * 59.99567 * 20 19 18 40 40 H 1.09000 * 109.47202 * 299.99564 * 21 20 19 41 41 H 1.09000 * 109.47111 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47218 * 299.99776 * 22 17 16 43 43 H 1.09000 * 109.47401 * 60.00674 * 22 17 16 44 44 H 1.08999 * 113.77157 * 90.38334 * 23 9 7 45 45 H 1.09002 * 113.84143 * 318.91597 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4599 -5.3193 2.2106 15 6 -0.5738 -4.6857 4.3040 16 6 -1.7539 -5.4983 4.8407 17 6 -1.7369 -5.4732 6.3704 18 6 -0.4858 -6.1928 6.8783 19 6 -0.4684 -6.1671 8.4080 20 6 -1.7156 -6.8728 8.9441 21 6 -2.9667 -6.1533 8.4361 22 6 -2.9841 -6.1793 6.9059 23 6 -0.1058 -2.7570 0.0001 24 1 -0.4850 0.8401 -0.0004 25 1 2.5619 -4.0327 0.6538 26 1 1.8325 -4.2346 -0.9996 27 1 -0.1594 -4.9598 0.2327 28 1 1.0580 -3.5720 2.5714 29 1 0.3591 -5.1192 4.6645 30 1 -0.6538 -3.6556 4.6511 31 1 -2.6870 -5.0652 4.4802 32 1 -1.6735 -6.5284 4.4936 33 1 -1.7275 -4.4397 6.7167 34 1 -0.4951 -7.2262 6.5320 35 1 0.4027 -5.6898 6.4968 36 1 -0.4589 -5.1336 8.7540 37 1 0.4231 -6.6793 8.7698 38 1 -1.7031 -6.8550 10.0339 39 1 -1.7253 -7.9064 8.5980 40 1 -2.9572 -5.1198 8.7821 41 1 -3.8552 -6.6558 8.8184 42 1 -3.8754 -5.6667 6.5440 43 1 -2.9934 -7.2128 6.5596 44 1 -0.5312 -2.8713 -0.9969 45 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665224921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:16 Heat of formation + Delta-G solvation = -20.948156 kcal Electronic energy + Delta-G solvation = -21950.994346 eV Core-core repulsion = 18775.563330 eV Total energy + Delta-G solvation = -3175.431017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.65353 -38.78745 -37.43446 -33.84001 -33.18803 -31.78294 -30.94805 -29.45375 -27.45622 -24.81108 -24.67848 -23.01617 -22.63802 -21.09888 -19.87676 -19.84917 -19.18664 -16.91296 -16.60403 -15.64197 -15.36768 -15.27416 -14.85430 -14.41700 -14.28931 -14.13463 -13.73499 -13.59743 -13.18028 -12.75198 -12.64713 -12.51702 -12.25054 -11.90641 -11.67530 -11.52101 -11.29363 -11.23937 -11.19390 -10.89847 -10.81815 -10.55564 -10.54484 -10.23597 -10.18625 -10.06463 -9.82337 -9.49836 -9.41488 -8.84697 -8.32094 -6.90911 -5.77536 -3.11321 3.08582 3.36695 3.42031 3.44871 3.67548 4.43307 4.50079 4.53483 4.59186 4.94360 4.99505 5.06343 5.13412 5.20133 5.30813 5.33458 5.35474 5.40844 5.47218 5.48142 5.54298 5.60860 5.72586 5.80644 5.84799 5.89068 5.97226 6.00118 6.07244 6.12359 6.15515 6.19144 6.26566 6.33431 6.42225 6.45284 6.53669 6.87764 7.23220 7.36221 7.60775 7.95804 8.10056 8.73326 9.02371 9.69047 10.57469 11.38696 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003132 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.005710 B = 8938.509021 C = 9428.912114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.612 5.612 10 C 0.110 3.890 11 C 0.090 3.910 12 N -0.695 5.695 13 C 0.510 3.490 14 O -0.554 6.554 15 C -0.141 4.141 16 C -0.097 4.097 17 C -0.088 4.088 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.114 4.114 23 C 0.151 3.849 24 H 0.253 0.747 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.403 0.597 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 -13.117 16.278 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.339 5.339 10 C -0.017 4.017 11 C -0.017 4.017 12 N -0.344 5.344 13 C 0.297 3.703 14 O -0.433 6.433 15 C -0.181 4.181 16 C -0.135 4.135 17 C -0.107 4.107 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.152 4.152 23 C 0.024 3.976 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.237 0.763 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.748 -13.200 15.849 20.808 hybrid contribution 0.867 1.359 -0.050 1.613 sum -1.881 -11.840 15.799 19.833 Atomic orbital electron populations 1.69845 1.04996 1.25198 1.56427 1.24792 0.95633 0.97502 1.02452 0.86074 0.78705 0.83846 0.77275 1.20500 1.21769 1.21734 1.19055 0.90233 0.82026 1.43996 0.90265 1.46167 1.02306 0.99148 1.86276 1.22917 0.94565 0.86901 0.97280 1.22826 0.98790 1.00004 0.80036 1.45576 1.29819 1.52166 1.06827 1.20637 0.81297 0.78487 0.89887 1.90653 1.36687 1.44240 1.71732 1.21720 1.01192 1.02900 0.92308 1.21357 0.97881 1.00693 0.93535 1.21205 0.94796 0.99726 0.94935 1.21661 0.97903 1.00818 0.95102 1.21539 0.97546 1.00720 0.95967 1.21537 0.94910 0.99519 0.99752 1.21545 0.97558 1.00660 0.95962 1.21579 0.97718 1.00886 0.94992 1.22735 0.88121 0.89577 0.97132 0.93699 0.93545 0.93704 0.89458 0.76272 0.89184 0.89033 0.91164 0.91350 0.91136 0.91978 0.91699 0.92061 0.92272 0.92431 0.92148 0.92084 0.92301 0.91919 0.91970 0.94814 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 11.39 55.49 0.63 -26.60 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.21 10.70 -15.06 -0.16 -6.37 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.38 3.70 -177.88 -0.66 -16.04 16 10 C 0.11 2.20 8.68 -2.96 -0.03 2.17 16 11 C 0.09 1.76 4.40 -70.15 -0.31 1.46 16 12 N -0.69 -12.15 5.37 -55.34 -0.30 -12.45 16 13 C 0.51 8.56 7.83 -10.99 -0.09 8.47 16 14 O -0.55 -11.17 15.60 5.56 0.09 -11.08 16 15 C -0.14 -1.72 5.46 -27.88 -0.15 -1.87 16 16 C -0.10 -1.12 3.97 -26.73 -0.11 -1.23 16 17 C -0.09 -0.82 2.19 -90.62 -0.20 -1.02 16 18 C -0.12 -1.00 4.96 -26.73 -0.13 -1.13 16 19 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 20 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 21 C -0.12 -0.93 5.92 -26.70 -0.16 -1.08 16 22 C -0.11 -1.00 5.21 -26.70 -0.14 -1.14 16 23 C 0.15 3.64 7.32 -2.85 -0.02 3.62 16 24 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.68 7.51 -51.93 -0.39 1.30 16 28 H 0.40 6.61 8.74 -40.82 -0.36 6.26 16 29 H 0.09 0.91 6.56 -51.93 -0.34 0.57 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -31.74 353.79 -9.94 -41.68 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.11 Total: 2.80 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.90 Total: -0.55 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.32 Total: -55.09 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.74 -9.94 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665224921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.728 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds