Wall clock time and date at job start Tue Mar 31 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48503 * 109.46968 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47299 * 300.00014 * 3 2 1 6 6 H 1.48495 * 109.47075 * 60.00174 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 14 14 C 1.34773 * 120.00358 * 154.99590 * 13 11 10 15 15 O 1.21287 * 119.99899 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00419 * 179.97438 * 14 13 11 17 17 C 1.52997 * 117.49918 * 248.62421 * 16 14 13 18 18 C 1.52994 * 59.99968 * 252.50868 * 17 16 14 19 19 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 20 20 C 1.53000 * 109.46704 * 300.00016 * 19 11 10 21 21 C 1.53005 * 109.47029 * 179.97438 * 20 19 11 22 22 C 1.53001 * 109.46939 * 59.99699 * 21 20 19 23 23 C 1.52991 * 109.47684 * 300.00395 * 22 21 20 24 24 C 1.52997 * 109.47504 * 179.97438 * 19 11 10 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 0.97007 * 119.99919 * 335.00159 * 13 11 10 30 30 H 1.09005 * 115.54529 * 34.33612 * 16 14 13 31 31 H 1.08998 * 117.50187 * 0.02562 * 17 16 14 32 32 H 1.09004 * 117.49396 * 145.01814 * 17 16 14 33 33 H 1.08999 * 117.49951 * 252.50985 * 18 17 16 34 34 H 1.08997 * 117.51903 * 107.48442 * 18 17 16 35 35 H 1.09002 * 109.47016 * 59.99741 * 19 11 10 36 36 H 1.08993 * 109.47376 * 299.99617 * 20 19 11 37 37 H 1.08992 * 109.47261 * 60.00195 * 20 19 11 38 38 H 1.09002 * 109.47110 * 299.99981 * 21 20 19 39 39 H 1.08994 * 109.47689 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.47255 * 179.97438 * 22 21 20 41 41 H 1.09006 * 109.46733 * 60.00638 * 22 21 20 42 42 H 1.09006 * 109.47233 * 299.99936 * 23 22 21 43 43 H 1.09004 * 109.47763 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.47346 * 300.00076 * 24 19 11 45 45 H 1.09002 * 109.47196 * 59.99850 * 24 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4981 -4.8134 -0.9338 13 7 0.1441 -4.6764 1.1289 14 6 -1.0803 -5.2372 1.0770 15 8 -1.4205 -5.8609 0.0940 16 6 -2.0265 -5.0903 2.2407 17 6 -2.3461 -6.3460 3.0542 18 6 -3.4017 -5.7499 2.1208 19 6 1.8248 -6.1411 0.1235 20 6 2.7855 -6.2908 -1.0579 21 6 3.5468 -7.6120 -0.9319 22 6 2.5530 -8.7752 -0.9321 23 6 1.5922 -8.6256 0.2491 24 6 0.8306 -7.3040 0.1235 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 0.4162 -4.1777 1.9152 30 1 -1.9674 -4.1436 2.7779 31 1 -1.8718 -7.2784 2.7479 32 1 -2.4973 -6.2257 4.1270 33 1 -4.2474 -5.2375 2.5795 34 1 -3.6223 -6.2898 1.2000 35 1 2.3907 -6.1474 1.0551 36 1 2.2197 -6.2845 -1.9894 37 1 3.4938 -5.4623 -1.0574 38 1 4.1127 -7.6178 -0.0003 39 1 4.2316 -7.7185 -1.7732 40 1 3.0953 -9.7165 -0.8428 41 1 1.9871 -8.7694 -1.8638 42 1 2.1581 -8.6314 1.1807 43 1 0.8839 -9.4541 0.2486 44 1 0.1464 -7.1972 0.9653 45 1 0.2644 -7.2980 -0.8079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698878310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:04 Heat of formation + Delta-G solvation = -28.289125 kcal Electronic energy + Delta-G solvation = -23050.206411 eV Core-core repulsion = 19874.457066 eV Total energy + Delta-G solvation = -3175.749345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.11803 -38.35703 -36.22575 -35.36598 -33.55333 -31.55219 -30.60468 -30.45267 -27.15144 -24.59544 -23.44317 -22.50095 -22.38858 -21.68492 -20.24958 -19.89169 -19.45119 -17.36827 -16.97084 -15.86292 -15.66992 -15.00263 -14.56931 -14.18635 -14.05633 -14.04213 -13.81853 -13.60839 -13.19414 -12.99577 -12.37664 -12.33268 -12.00415 -11.87779 -11.70631 -11.51966 -11.24046 -10.97295 -10.87183 -10.86508 -10.64978 -10.53661 -10.41342 -10.37750 -10.14940 -10.00554 -9.78831 -9.68206 -9.41458 -8.91670 -8.50534 -6.95733 -5.78708 -3.08361 2.83197 3.41277 3.47133 3.49426 3.51965 3.98066 4.55229 4.78067 4.80506 4.87034 4.88351 4.96801 4.99987 5.22604 5.35243 5.41085 5.47326 5.53798 5.57171 5.61053 5.64553 5.67649 5.76185 5.79905 5.86308 5.95780 6.00556 6.03688 6.10792 6.16945 6.18205 6.25593 6.33500 6.35760 6.46814 6.50376 6.56420 6.67953 6.76168 7.02939 7.67724 7.96314 8.39176 8.64620 9.51062 10.07532 10.42934 11.43682 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.005602 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.648285 B = 4997.399195 C = 6854.684246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.144 3.856 11 C 0.143 3.857 12 H 0.086 0.914 13 N -0.706 5.706 14 C 0.544 3.456 15 O -0.546 6.546 16 C -0.191 4.191 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.091 4.091 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.103 4.103 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.036 0.964 28 H 0.023 0.977 29 H 0.404 0.596 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 -16.734 4.513 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.016 3.984 11 C 0.038 3.962 12 H 0.104 0.896 13 N -0.355 5.355 14 C 0.331 3.669 15 O -0.424 6.424 16 C -0.212 4.212 17 C -0.194 4.194 18 C -0.186 4.186 19 C -0.111 4.111 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.141 4.141 25 H 0.064 0.936 26 H 0.220 0.780 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.238 0.762 30 H 0.142 0.858 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.628 -17.039 3.795 17.468 hybrid contribution 0.320 1.408 0.425 1.505 sum 0.948 -15.631 4.220 16.219 Atomic orbital electron populations 1.69678 1.05104 1.25552 1.57589 1.24742 0.95492 0.97686 1.02912 0.86129 0.78779 0.84151 0.77184 1.20563 1.21871 1.21889 1.19258 0.91037 0.84091 1.42843 0.91127 1.42364 1.06007 0.99741 1.89479 1.21010 0.93195 0.85366 0.98799 1.21295 0.90642 0.94188 0.90087 0.89642 1.45865 1.14441 1.54556 1.20619 1.19469 0.81737 0.78370 0.87344 1.90662 1.76310 1.41971 1.33455 1.22243 0.99014 0.99486 1.00444 1.22884 1.03119 0.95786 0.97593 1.22892 0.91124 1.02599 1.01969 1.21508 0.96283 0.94447 0.98839 1.21607 0.98168 0.97254 0.98281 1.21509 0.97568 0.94861 1.01447 1.21530 0.97433 0.97777 0.98866 1.21576 0.98059 0.98009 0.98063 1.21613 0.96868 0.92780 1.02824 0.93551 0.78008 0.94675 0.95960 0.76158 0.85803 0.88559 0.88168 0.88228 0.87557 0.91391 0.91838 0.91208 0.92251 0.92298 0.92707 0.92143 0.92606 0.92660 0.92323 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.06 5.43 -59.91 -0.33 -18.39 16 10 C 0.14 2.80 5.31 -4.04 -0.02 2.77 16 11 C 0.14 2.40 2.00 -67.93 -0.14 2.27 16 12 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 13 N -0.71 -11.39 4.41 -53.81 -0.24 -11.62 16 14 C 0.54 8.92 5.97 -10.99 -0.07 8.85 16 15 O -0.55 -10.30 13.38 5.55 0.07 -10.23 16 16 C -0.19 -2.55 6.19 -91.78 -0.57 -3.11 16 17 C -0.16 -1.67 10.23 -26.74 -0.27 -1.94 16 18 C -0.15 -1.76 10.04 -26.74 -0.27 -2.03 16 19 C -0.09 -1.26 1.96 -90.62 -0.18 -1.44 16 20 C -0.12 -1.49 4.85 -26.73 -0.13 -1.62 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.12 -1.27 5.92 -26.74 -0.16 -1.43 16 23 C -0.12 -1.38 5.92 -26.71 -0.16 -1.54 16 24 C -0.10 -1.43 3.73 -26.71 -0.10 -1.53 16 25 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.39 10.24 7.33 -40.82 -0.30 9.94 16 27 H 0.04 0.69 6.71 -51.93 -0.35 0.34 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.40 6.28 8.60 -40.82 -0.35 5.92 16 30 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 1.40 7.67 -51.93 -0.40 1.00 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.87 5.78 -51.93 -0.30 0.57 16 45 H 0.07 1.10 7.53 -51.93 -0.39 0.71 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -30.72 350.43 -9.83 -40.55 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -7.86 Total: 13.89 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.46 Total: -9.41 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.16 Total: -57.28 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.72 -9.83 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698878310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.262 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds