Wall clock time and date at job start Tue Mar 31 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00069 * 2 1 4 4 H 1.48502 * 109.46791 * 270.00166 * 3 2 1 5 5 H 1.48503 * 109.47002 * 29.99890 * 3 2 1 6 6 H 1.48492 * 109.47057 * 150.00182 * 3 2 1 7 7 C 1.38816 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99591 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00343 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00088 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47057 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47045 * 55.00324 * 11 10 9 13 13 C 1.53002 * 109.47415 * 295.00255 * 11 10 9 14 14 C 1.52997 * 109.47415 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47232 * 60.00127 * 14 13 11 16 16 C 1.53002 * 109.47143 * 300.00043 * 15 14 13 17 17 C 1.52997 * 109.47232 * 175.00382 * 11 10 9 18 18 H 1.09001 * 109.47289 * 299.99925 * 17 11 10 19 19 N 1.46506 * 109.47289 * 60.00053 * 17 11 10 20 20 C 1.34774 * 120.00251 * 205.00099 * 19 17 11 21 21 O 1.21282 * 119.99905 * 0.02562 * 20 19 17 22 22 C 1.50696 * 119.99967 * 180.02562 * 20 19 17 23 23 C 1.53784 * 113.61272 * 277.49661 * 22 20 19 24 24 C 1.53781 * 87.08196 * 220.01829 * 23 22 20 25 25 C 1.53778 * 113.61416 * 180.02562 * 22 20 19 26 26 H 0.96992 * 120.00186 * 359.97438 * 1 2 3 27 27 H 0.97003 * 119.99443 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46539 * 60.00627 * 10 9 7 29 29 H 1.09000 * 109.47538 * 300.00699 * 10 9 7 30 30 H 1.09002 * 109.47070 * 300.00053 * 13 11 10 31 31 H 1.09000 * 109.46986 * 59.99882 * 13 11 10 32 32 H 1.08998 * 109.47624 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.47045 * 300.00068 * 14 13 11 34 34 H 1.09002 * 109.47153 * 60.00008 * 15 14 13 35 35 H 1.09004 * 109.47261 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.47067 * 300.00018 * 16 15 14 37 37 H 1.08992 * 109.47461 * 179.97438 * 16 15 14 38 38 H 0.97006 * 119.99584 * 25.00028 * 19 17 11 39 39 H 1.08993 * 112.85222 * 48.80274 * 22 20 19 40 40 H 1.09002 * 113.61778 * 334.56605 * 23 22 20 41 41 H 1.09003 * 113.61464 * 105.46969 * 23 22 20 42 42 H 1.08997 * 113.61636 * 270.88798 * 24 23 22 43 43 H 1.09001 * 113.61671 * 139.97707 * 24 23 22 44 44 H 1.09008 * 113.61383 * 254.52781 * 25 22 20 45 45 H 1.08997 * 113.61806 * 25.42603 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0011 12 1 5.8658 -1.5455 0.8408 13 6 6.0064 -1.4987 -1.3084 14 6 7.5105 -1.2186 -1.3081 15 6 8.2750 -2.5378 -1.1822 16 6 7.8850 -3.2305 0.1251 17 6 6.3803 -3.5109 0.1246 18 1 6.1025 -4.0044 1.0559 19 7 6.0450 -4.3790 -1.0070 20 6 6.1627 -5.7164 -0.8884 21 8 6.5457 -6.2013 0.1553 22 6 5.8183 -6.6093 -2.0525 23 6 4.3141 -6.9028 -2.1797 24 6 4.7063 -8.3443 -2.5447 25 6 6.0049 -8.1067 -1.7565 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3621 -0.0007 28 1 3.8485 -3.0426 -0.8909 29 1 3.8491 -3.0424 0.8891 30 1 5.7569 -2.1446 -2.1502 31 1 5.4621 -0.5586 -1.3979 32 1 7.7884 -0.7247 -2.2392 33 1 7.7596 -0.5725 -0.4663 34 1 8.0259 -3.1839 -2.0240 35 1 9.3466 -2.3382 -1.1815 36 1 8.1341 -2.5845 0.9670 37 1 8.4293 -4.1706 0.2147 38 1 5.7383 -3.9912 -1.8415 39 1 6.2820 -6.2871 -2.9847 40 1 3.7723 -6.8231 -1.2373 41 1 3.8311 -6.3623 -2.9938 42 1 4.8649 -8.4966 -3.6123 43 1 4.0579 -9.0992 -2.1000 44 1 6.8873 -8.5385 -2.2289 45 1 5.9252 -8.3560 -0.6984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699475921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:05 Heat of formation + Delta-G solvation = -27.787744 kcal Electronic energy + Delta-G solvation = -23004.055115 eV Core-core repulsion = 19828.327512 eV Total energy + Delta-G solvation = -3175.727604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58317 -39.01416 -37.07901 -34.84119 -33.61309 -31.97241 -30.15260 -29.92275 -26.76029 -25.73619 -25.33907 -22.87339 -22.20729 -21.39497 -20.65876 -19.46942 -18.99856 -17.84405 -17.36244 -15.82581 -15.73495 -15.15513 -15.01349 -14.56797 -14.41932 -14.03564 -13.81289 -13.48013 -13.11602 -12.82989 -12.76384 -12.56180 -12.29384 -12.27965 -12.03519 -11.74159 -11.60458 -11.30794 -11.10037 -10.99059 -10.81538 -10.68046 -10.53049 -10.47435 -10.27125 -10.03704 -9.91759 -9.58578 -9.57269 -8.94420 -8.83996 -7.23270 -5.77470 -3.12765 2.70961 3.28774 3.35475 3.37769 3.43769 4.38237 4.47852 4.57874 4.61397 4.67986 4.70857 4.79610 4.82676 5.06860 5.12933 5.23459 5.39549 5.50281 5.50796 5.53909 5.55545 5.58319 5.65893 5.67302 5.73001 5.76923 5.79555 5.82037 5.95656 5.98887 6.07626 6.10245 6.17139 6.26267 6.28124 6.37313 6.47219 6.59626 6.69950 6.77875 7.62218 7.99063 8.33530 8.41582 9.20816 9.93093 10.13121 11.41125 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.005016 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.688920 B = 5580.304261 C = 6835.895940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.165 3.835 11 C -0.106 4.106 12 H 0.084 0.916 13 C -0.112 4.112 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.155 3.845 18 H 0.088 0.912 19 N -0.715 5.715 20 C 0.523 3.477 21 O -0.546 6.546 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.117 4.117 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.400 0.600 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.834 -10.862 -6.407 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.038 3.962 11 C -0.126 4.126 12 H 0.102 0.898 13 C -0.150 4.150 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.167 4.167 17 C 0.050 3.950 18 H 0.106 0.894 19 N -0.366 5.366 20 C 0.309 3.691 21 O -0.424 6.424 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.180 4.180 25 C -0.154 4.154 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.864 -11.280 -5.644 21.059 hybrid contribution 0.353 1.584 -0.412 1.675 sum 17.216 -9.695 -6.056 20.666 Atomic orbital electron populations 1.69699 1.05106 1.25788 1.57681 1.24665 0.95213 0.97140 1.02115 0.86563 0.79249 0.85078 0.77744 1.21084 1.21729 1.20352 1.19058 0.80684 0.94688 1.42845 0.89322 1.42721 1.03994 1.02177 1.91145 1.20613 0.87797 0.89178 0.98656 1.21680 0.96546 0.95327 0.98998 0.89806 1.21549 0.95096 1.01282 0.97039 1.21590 0.95552 0.97104 1.01649 1.21481 0.99243 0.96680 0.97852 1.21909 0.95925 1.00687 0.98139 1.20916 0.93766 0.90142 0.90223 0.89417 1.46140 1.67675 1.05932 1.16875 1.20474 0.76729 0.82540 0.89327 1.90664 1.46706 1.74979 1.30006 1.22797 0.99410 0.96095 0.97841 1.22831 0.93558 0.96854 1.02904 1.22829 0.97765 0.97049 1.00372 1.22781 0.97857 0.92902 1.01909 0.93076 0.80661 0.95503 0.95672 0.92224 0.91034 0.92201 0.91991 0.92187 0.92458 0.91150 0.91682 0.76378 0.87275 0.89396 0.90499 0.90034 0.91028 0.91331 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 7 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.75 -17.57 5.13 -59.91 -0.31 -17.88 16 10 C 0.16 3.10 5.42 -4.04 -0.02 3.08 16 11 C -0.11 -1.54 2.02 -90.62 -0.18 -1.72 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.11 -1.47 4.90 -26.73 -0.13 -1.60 16 14 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 15 C -0.11 -1.17 5.77 -26.73 -0.15 -1.33 16 16 C -0.13 -1.47 5.61 -26.70 -0.15 -1.62 16 17 C 0.15 2.03 2.23 -67.90 -0.15 1.88 16 18 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 19 N -0.71 -8.66 3.62 -53.78 -0.19 -8.86 16 20 C 0.52 6.85 7.32 -10.99 -0.08 6.76 16 21 O -0.55 -9.07 15.56 5.56 0.09 -8.98 16 22 C -0.14 -1.41 4.15 -90.96 -0.38 -1.79 16 23 C -0.12 -1.22 7.63 -25.92 -0.20 -1.42 16 24 C -0.14 -1.20 8.08 -25.94 -0.21 -1.41 16 25 C -0.12 -1.13 7.40 -25.94 -0.19 -1.33 16 26 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.36 8.16 4.71 -40.82 -0.19 7.96 16 28 H 0.03 0.51 7.61 -51.93 -0.40 0.11 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.73 6.51 -51.93 -0.34 0.39 16 31 H 0.07 1.08 7.18 -51.93 -0.37 0.71 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.60 7.61 -51.93 -0.39 0.21 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.35 6.67 -40.82 -0.27 4.08 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.09 1.09 7.43 -51.93 -0.39 0.70 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -32.42 346.64 -9.22 -41.65 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.83 Total: 9.17 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.26 Total: -8.94 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.27 Total: -55.34 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.42 -9.22 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699475921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.858 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds