Wall clock time and date at job start Tue Mar 31 2020 03:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00176 * 2 1 4 4 C 1.52994 * 109.47474 * 84.39726 * 3 2 1 5 5 H 1.09003 * 113.03957 * 293.53596 * 4 3 2 6 6 C 1.53936 * 113.77338 * 65.28613 * 4 3 2 7 7 C 1.53945 * 86.41018 * 137.96199 * 6 4 3 8 8 N 1.47583 * 86.11365 * 336.34294 * 7 6 4 9 9 C 1.36941 * 134.48778 * 204.65242 * 8 7 6 10 10 H 1.08005 * 119.99664 * 171.56414 * 9 8 7 11 11 C 1.38812 * 120.00357 * 351.57301 * 9 8 7 12 12 N 1.31617 * 119.99920 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00067 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46993 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47395 * 119.99428 * 13 11 9 16 16 H 1.48498 * 109.47111 * 239.99384 * 13 11 9 17 17 C 1.34775 * 120.00131 * 179.97438 * 2 1 3 18 18 O 1.21277 * 120.00223 * 180.02562 * 17 2 1 19 19 C 1.50702 * 119.99907 * 0.02562 * 17 2 1 20 20 C 1.52998 * 109.47250 * 180.02562 * 19 17 2 21 21 C 1.52991 * 109.47221 * 180.02562 * 20 19 17 22 22 C 1.53002 * 115.55542 * 34.32679 * 21 20 19 23 23 C 1.53006 * 117.49890 * 248.62068 * 21 20 19 24 24 C 1.52995 * 60.00142 * 252.50845 * 23 21 20 25 25 H 1.09001 * 109.46971 * 91.14074 * 1 2 3 26 26 H 1.08997 * 109.47255 * 211.14224 * 1 2 3 27 27 H 1.08998 * 109.47105 * 331.14145 * 1 2 3 28 28 H 1.08999 * 109.46720 * 324.39371 * 3 2 1 29 29 H 1.08995 * 109.47086 * 204.40262 * 3 2 1 30 30 H 1.09002 * 113.73755 * 23.56434 * 6 4 3 31 31 H 1.09004 * 113.74636 * 252.36159 * 6 4 3 32 32 H 1.09001 * 113.76671 * 90.64134 * 7 6 4 33 33 H 1.09000 * 113.77260 * 221.93061 * 7 6 4 34 34 H 0.96997 * 120.00086 * 180.02562 * 12 11 9 35 35 H 1.08991 * 109.47334 * 300.00235 * 19 17 2 36 36 H 1.09003 * 109.46911 * 60.00148 * 19 17 2 37 37 H 1.09009 * 109.47026 * 300.00208 * 20 19 17 38 38 H 1.08995 * 109.46956 * 59.99904 * 20 19 17 39 39 H 1.09005 * 109.46998 * 85.57952 * 22 21 20 40 40 H 1.08998 * 109.47400 * 205.58851 * 22 21 20 41 41 H 1.09003 * 109.46806 * 325.58805 * 22 21 20 42 42 H 1.09005 * 117.49714 * 359.97438 * 23 21 20 43 43 H 1.09004 * 117.50113 * 145.01828 * 23 21 20 44 44 H 1.09004 * 117.50162 * 252.51208 * 24 23 21 45 45 H 1.09005 * 117.50209 * 107.48357 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3307 1.7809 1.4355 5 1 1.3750 2.0608 1.8789 6 6 3.1933 0.8805 2.3381 7 6 3.8038 2.1821 2.8887 8 7 3.3906 2.7974 1.6125 9 6 3.8174 3.8760 0.8846 10 1 3.4277 4.0457 -0.1082 11 6 4.7511 4.7509 1.4227 12 7 5.2257 4.5442 2.6328 13 14 5.3338 6.2217 0.4295 14 1 4.6534 6.2285 -0.8905 15 1 5.0091 7.4729 1.1606 16 1 6.8024 6.1328 0.2285 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0010 19 6 1.3854 -2.4723 0.0005 20 6 2.3796 -3.6352 0.0018 21 6 1.6147 -4.9602 0.0012 22 6 0.2983 -4.9619 -0.7787 23 6 1.6885 -5.8192 1.2652 24 6 2.4367 -6.2506 0.0023 25 1 -0.3633 -0.0205 -1.0275 26 1 -0.3633 -0.8795 0.5315 27 1 -0.3633 0.9000 0.4960 28 1 1.6556 2.0011 -0.5983 29 1 3.1897 1.1154 -0.4246 30 1 3.9029 0.2606 1.7900 31 1 2.6193 0.3189 3.0752 32 1 3.2799 2.5796 3.7580 33 1 4.8840 2.1366 3.0272 34 1 5.8779 5.1558 3.0090 35 1 0.7584 -2.5299 0.8902 36 1 0.7591 -2.5302 -0.8897 37 1 3.0070 -3.5778 -0.8878 38 1 3.0056 -3.5771 0.8922 39 1 0.4984 -5.1754 -1.8287 40 1 -0.3639 -5.7263 -0.3722 41 1 -0.1773 -3.9851 -0.6908 42 1 2.2824 -5.4405 2.0971 43 1 0.7991 -6.3856 1.5415 44 1 2.0396 -7.1008 -0.5523 45 1 3.5226 -6.1555 0.0034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707053421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:30 Heat of formation + Delta-G solvation = 38.113624 kcal Electronic energy + Delta-G solvation = -22439.302334 eV Core-core repulsion = 19266.432429 eV Total energy + Delta-G solvation = -3172.869906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.91516 -38.47262 -37.51287 -35.12979 -32.51595 -32.01967 -28.82171 -28.24616 -27.73655 -26.46072 -24.64703 -23.19252 -22.62066 -22.04679 -19.14424 -18.92717 -18.69998 -17.00804 -16.52215 -15.94847 -15.78228 -15.37521 -14.77573 -14.50851 -14.18580 -13.89129 -13.56291 -13.21462 -13.06188 -12.66685 -12.60844 -12.41434 -12.34111 -12.12725 -11.83475 -11.69400 -11.37275 -11.24315 -11.10144 -10.96930 -10.79567 -10.63967 -10.35466 -10.28410 -9.82750 -9.75838 -9.63939 -9.51395 -9.31818 -8.72608 -8.25548 -6.76927 -5.70075 -3.01517 2.90565 3.22472 3.43094 3.48025 3.50742 3.55721 4.41183 4.52705 4.53679 4.67923 4.73633 4.98355 5.09599 5.13668 5.20504 5.28982 5.41488 5.44253 5.45982 5.52176 5.54503 5.58331 5.66653 5.70328 5.71214 5.83915 5.91963 5.94920 5.97427 6.04355 6.08659 6.19295 6.24799 6.45378 6.62989 6.79599 6.84578 6.88784 7.35208 7.55801 7.67353 7.69716 8.06086 8.48424 9.11991 9.78327 10.70737 11.48045 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031712 B = 0.003410 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.726473 B = 8210.263723 C = 8450.860784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.115 3.885 4 C 0.127 3.873 5 H 0.040 0.960 6 C -0.158 4.158 7 C 0.167 3.833 8 N -0.600 5.600 9 C -0.221 4.221 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.508 3.492 18 O -0.532 6.532 19 C -0.136 4.136 20 C -0.066 4.066 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.177 4.177 24 C -0.177 4.177 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.252 0.748 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.867 -19.150 -4.972 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.346 5.346 3 C -0.008 4.008 4 C 0.019 3.981 5 H 0.057 0.943 6 C -0.196 4.196 7 C 0.041 3.959 8 N -0.327 5.327 9 C -0.349 4.349 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.739 3.261 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.296 3.704 18 O -0.408 6.408 19 C -0.176 4.176 20 C -0.104 4.104 21 C -0.128 4.128 22 C -0.179 4.179 23 C -0.213 4.213 24 C -0.214 4.214 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.023 -18.833 -5.036 22.904 hybrid contribution 0.066 1.046 -0.333 1.100 sum -11.957 -17.787 -5.369 22.094 Atomic orbital electron populations 1.21760 0.80210 1.03169 1.01320 1.47846 1.06604 1.06599 1.73520 1.21770 0.97770 0.82644 0.98607 1.22566 0.92835 0.89660 0.93019 0.94267 1.23815 0.99545 0.97583 0.98668 1.22062 0.99092 0.86323 0.88394 1.46057 1.33724 1.30764 1.22147 1.19036 1.19646 0.99942 0.96299 0.90403 1.24824 1.00408 0.98744 0.96460 1.69852 1.33233 1.38282 1.15248 0.86096 0.78338 0.82679 0.78963 1.20479 1.21826 1.21753 1.20655 0.88209 0.85285 0.76294 1.90715 1.13905 1.87194 1.49021 1.21765 0.99535 0.92380 1.03923 1.20860 0.96318 0.89545 1.03680 1.21546 0.98067 0.92335 1.00848 1.21483 0.94548 1.02371 0.99477 1.23179 1.02706 1.03583 0.91875 1.23021 0.98980 0.97797 1.01592 0.92943 0.91386 0.90860 0.91667 0.88973 0.89617 0.94087 0.95616 0.92003 0.93773 0.89052 0.88943 0.90858 0.90845 0.92266 0.92643 0.91384 0.88729 0.89052 0.89019 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.24 59.85 0.61 1.39 16 2 N -0.61 -8.89 2.79 -181.58 -0.51 -9.40 16 3 C 0.12 2.14 5.41 -4.04 -0.02 2.12 16 4 C 0.13 2.69 4.59 -66.68 -0.31 2.39 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -3.36 7.25 -25.81 -0.19 -3.54 16 7 C 0.17 4.22 7.33 -2.97 -0.02 4.20 16 8 N -0.60 -15.97 3.58 -170.49 -0.61 -16.58 16 9 C -0.22 -6.36 10.52 -15.06 -0.16 -6.52 16 10 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -28.27 11.63 55.49 0.65 -27.62 16 13 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 C 0.51 7.64 7.26 -10.98 -0.08 7.56 16 18 O -0.53 -10.35 13.92 5.56 0.08 -10.27 16 19 C -0.14 -1.41 3.27 -27.88 -0.09 -1.50 16 20 C -0.07 -0.72 4.69 -26.74 -0.13 -0.85 16 21 C -0.13 -1.11 2.47 -154.51 -0.38 -1.49 16 22 C -0.12 -0.86 9.49 37.16 0.35 -0.51 16 23 C -0.18 -1.46 9.82 -26.73 -0.26 -1.72 16 24 C -0.18 -1.47 9.97 -26.73 -0.27 -1.74 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.51 6.49 -51.93 -0.34 0.18 16 27 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 28 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 29 H 0.09 2.01 7.26 -51.93 -0.38 1.63 16 30 H 0.09 1.96 6.59 -51.93 -0.34 1.61 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.72 7.57 -51.93 -0.39 1.32 16 34 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 35 H 0.09 0.81 7.40 -51.93 -0.38 0.43 16 36 H 0.09 0.77 6.41 -51.93 -0.33 0.44 16 37 H 0.07 0.89 8.10 -51.92 -0.42 0.47 16 38 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.05 0.35 7.90 -51.93 -0.41 -0.06 16 41 H 0.07 0.43 5.59 -51.93 -0.29 0.14 16 42 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 43 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -33.71 357.18 -8.94 -42.65 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.88 Total: -1.32 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.03 Total: -0.53 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.47 Total: -53.61 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.71 -8.94 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707053421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.768 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds