Wall clock time and date at job start Tue Mar 31 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 115.56528 * 2 1 4 4 C 1.52999 * 117.50076 * 214.30815 * 2 1 3 5 5 C 1.52995 * 60.00274 * 252.51168 * 4 2 1 6 6 H 1.09002 * 117.49626 * 252.48351 * 5 4 2 7 7 C 1.50701 * 117.50004 * 107.48878 * 5 4 2 8 8 O 1.21277 * 119.99987 * 291.39114 * 7 5 4 9 9 N 1.34780 * 119.99973 * 111.38869 * 7 5 4 10 10 C 1.46495 * 119.99671 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.45529 * 299.96941 * 10 9 7 12 12 C 1.53039 * 109.45802 * 180.02562 * 10 9 7 13 13 C 1.53198 * 109.31539 * 301.34963 * 12 10 9 14 14 N 1.46921 * 108.77287 * 305.36582 * 13 12 10 15 15 C 1.36943 * 120.62829 * 233.58363 * 14 13 12 16 16 H 1.07999 * 120.00088 * 29.31689 * 15 14 13 17 17 C 1.38813 * 119.99794 * 209.31821 * 15 14 13 18 18 N 1.31623 * 120.00093 * 24.39579 * 17 15 14 19 19 Si 1.86804 * 119.99827 * 204.12042 * 17 15 14 20 20 H 1.48493 * 109.47027 * 180.27338 * 19 17 15 21 21 H 1.48498 * 109.46936 * 300.27465 * 19 17 15 22 22 H 1.48503 * 109.47150 * 60.27289 * 19 17 15 23 23 C 1.46924 * 118.74374 * 53.85669 * 14 13 12 24 24 C 1.53043 * 109.45775 * 59.94273 * 10 9 7 25 25 H 1.08999 * 109.47026 * 274.30815 * 1 2 3 26 26 H 1.09000 * 109.47113 * 34.31488 * 1 2 3 27 27 H 1.09006 * 109.47084 * 154.30878 * 1 2 3 28 28 H 1.08992 * 109.47246 * 205.68915 * 3 2 1 29 29 H 1.09001 * 109.46464 * 325.69130 * 3 2 1 30 30 H 1.08999 * 109.46974 * 85.68381 * 3 2 1 31 31 H 1.09004 * 117.50197 * 145.02213 * 4 2 1 32 32 H 1.09001 * 117.51610 * 359.97438 * 4 2 1 33 33 H 0.96999 * 119.99811 * 0.02562 * 9 7 5 34 34 H 1.08996 * 109.47271 * 300.03836 * 11 10 9 35 35 H 1.09006 * 109.46573 * 60.03818 * 11 10 9 36 36 H 1.08999 * 109.47326 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.50100 * 181.39685 * 12 10 9 38 38 H 1.09004 * 109.52731 * 61.31488 * 12 10 9 39 39 H 1.09000 * 109.58507 * 185.57565 * 13 12 10 40 40 H 1.08998 * 109.58511 * 65.15044 * 13 12 10 41 41 H 0.96990 * 119.99600 * 5.50037 * 18 17 15 42 42 H 1.09000 * 109.58484 * 65.92514 * 23 14 13 43 43 H 1.08994 * 109.59247 * 186.34879 * 23 14 13 44 44 H 1.09003 * 109.49885 * 178.60336 * 24 10 9 45 45 H 1.09005 * 109.49212 * 298.69492 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7650 6 1 3.1717 -0.8756 1.2683 7 6 1.3720 -2.1406 1.4609 8 8 0.1639 -2.0534 1.4011 9 7 1.9416 -3.1495 2.1496 10 6 1.1012 -4.1403 2.8265 11 6 0.2189 -3.4387 3.8610 12 6 1.9907 -5.1685 3.5292 13 6 2.8974 -5.8445 2.4958 14 7 2.0602 -6.4023 1.4251 15 6 2.1698 -7.7200 1.0685 16 1 2.4713 -8.4543 1.8008 17 6 1.8936 -8.1117 -0.2342 18 7 1.9983 -7.2442 -1.2186 19 14 1.3806 -9.8721 -0.5913 20 1 1.1513 -10.0347 -2.0494 21 1 2.4545 -10.7992 -0.1526 22 1 0.1283 -10.1817 0.1443 23 6 1.1073 -5.5183 0.7401 24 6 0.2164 -4.8469 1.7969 25 1 -0.3633 0.0772 1.0248 26 1 -0.3633 0.8488 -0.5793 27 1 -0.3633 -0.9261 -0.4455 28 1 3.1824 1.3084 -0.4454 29 1 1.5812 2.0742 -0.5793 30 1 2.2772 1.7413 1.0247 31 1 3.1716 -0.8752 -1.2682 32 1 1.6115 -1.8589 -1.2679 33 1 2.9079 -3.2190 2.1977 34 1 0.8489 -2.9343 4.5936 35 1 -0.4148 -2.7061 3.3610 36 1 -0.4062 -4.1757 4.3651 37 1 1.3663 -5.9201 4.0123 38 1 2.6036 -4.6681 4.2789 39 1 3.4618 -6.6454 2.9733 40 1 3.5849 -5.1097 2.0768 41 1 2.3445 -6.3547 -1.0462 42 1 1.6518 -4.7575 0.1808 43 1 0.4903 -6.1039 0.0587 44 1 -0.3913 -5.6015 2.2963 45 1 -0.4334 -4.1172 1.3138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045403521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:42 Heat of formation + Delta-G solvation = -0.955504 kcal Electronic energy + Delta-G solvation = -23741.585661 eV Core-core repulsion = 20567.021591 eV Total energy + Delta-G solvation = -3174.564070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39754 -38.47836 -36.52839 -34.54795 -32.07047 -30.88840 -29.93346 -29.20161 -27.42490 -27.27580 -24.32079 -23.77626 -22.41383 -21.10709 -20.27975 -19.02489 -18.61638 -17.36639 -16.92202 -15.10885 -15.00554 -14.48257 -14.24778 -14.08444 -13.95665 -13.62530 -13.50220 -13.31870 -13.18192 -13.02566 -12.49535 -12.38420 -12.13265 -11.79515 -11.76701 -11.70535 -11.60053 -11.20416 -11.14449 -10.69626 -10.60520 -10.41806 -10.16707 -10.05298 -9.99326 -9.87105 -9.69523 -9.26443 -8.92257 -8.59145 -8.34752 -6.83810 -6.04197 -3.22284 2.80720 3.40963 3.50088 3.54151 3.71837 3.87330 4.61072 4.67650 4.71824 4.85730 5.07641 5.10817 5.24719 5.32332 5.37111 5.45647 5.54586 5.59142 5.59422 5.76717 5.86254 5.88259 5.97091 5.98241 6.02740 6.06941 6.11646 6.13717 6.21151 6.27128 6.35194 6.43864 6.60167 6.61035 6.64304 6.74347 6.79572 7.03538 7.14108 7.27672 7.92728 8.03294 8.60527 8.62476 9.14539 9.87151 10.32846 11.23663 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020935 B = 0.005221 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.174873 B = 5362.035989 C = 6021.382401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.145 4.145 5 C -0.188 4.188 6 H 0.116 0.884 7 C 0.545 3.455 8 O -0.535 6.535 9 N -0.709 5.709 10 C 0.185 3.815 11 C -0.159 4.159 12 C -0.137 4.137 13 C 0.148 3.852 14 N -0.597 5.597 15 C -0.351 4.351 16 H 0.054 0.946 17 C -0.023 4.023 18 N -0.915 5.915 19 Si 1.064 2.936 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.160 3.840 24 C -0.145 4.145 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.396 0.604 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.268 0.732 42 H 0.015 0.985 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 14.151 6.015 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.097 4.097 3 C -0.172 4.172 4 C -0.182 4.182 5 C -0.209 4.209 6 H 0.134 0.866 7 C 0.332 3.668 8 O -0.413 6.413 9 N -0.360 5.360 10 C 0.100 3.900 11 C -0.217 4.217 12 C -0.177 4.177 13 C 0.021 3.979 14 N -0.321 5.321 15 C -0.480 4.480 16 H 0.072 0.928 17 C -0.225 4.225 18 N -0.555 5.555 19 Si 0.894 3.106 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.221 1.221 23 C 0.034 3.966 24 C -0.185 4.185 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.230 0.770 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.079 0.921 42 H 0.033 0.967 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.399 13.114 4.777 13.963 hybrid contribution 1.281 0.845 1.434 2.100 sum 0.882 13.959 6.211 15.304 Atomic orbital electron populations 1.21331 0.90690 1.01369 1.02362 1.21548 0.95966 0.90301 1.01916 1.21382 0.99902 0.94038 1.01868 1.23209 1.02716 1.01302 0.91003 1.22377 1.01699 1.00858 0.96014 0.86620 1.19498 0.88100 0.81108 0.78100 1.90612 1.14387 1.75064 1.61225 1.46085 1.10065 1.26993 1.52864 1.20229 0.90709 0.87064 0.92025 1.22214 1.00057 1.01259 0.98205 1.22323 0.99177 0.97759 0.98404 1.20855 0.91732 0.95670 0.89603 1.44116 1.39986 1.07816 1.40208 1.19953 1.49402 0.83180 0.95504 0.92832 1.25848 0.99763 1.05691 0.91188 1.70778 1.44358 1.08073 1.32271 0.83540 0.76342 0.74847 0.75883 1.21104 1.22017 1.22062 1.20923 0.90755 0.92080 0.92833 1.22535 0.98543 0.99103 0.98317 0.91551 0.93699 0.91464 0.92424 0.91807 0.92242 0.88124 0.88004 0.76970 0.93519 0.90704 0.92333 0.90735 0.92613 0.92565 0.97025 0.92078 0.96695 0.90824 0.92044 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 8.09 37.16 0.30 -1.02 16 2 C -0.10 -1.16 2.70 -154.51 -0.42 -1.57 16 3 C -0.11 -1.06 9.85 37.16 0.37 -0.69 16 4 C -0.14 -1.84 9.52 -26.73 -0.25 -2.09 16 5 C -0.19 -2.43 5.91 -91.77 -0.54 -2.98 16 6 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 7 C 0.55 8.66 7.01 -10.98 -0.08 8.59 16 8 O -0.54 -9.68 9.32 5.56 0.05 -9.62 16 9 N -0.71 -11.08 4.09 -47.57 -0.19 -11.28 16 10 C 0.18 3.13 0.66 -131.78 -0.09 3.04 16 11 C -0.16 -2.43 8.40 37.16 0.31 -2.12 16 12 C -0.14 -2.29 4.96 -26.61 -0.13 -2.43 16 13 C 0.15 2.99 6.24 -3.71 -0.02 2.97 16 14 N -0.60 -14.80 2.83 -172.03 -0.49 -15.28 16 15 C -0.35 -9.80 9.48 -15.06 -0.14 -9.95 16 16 H 0.05 1.50 7.94 -52.49 -0.42 1.08 16 17 C -0.02 -0.64 4.69 -17.43 -0.08 -0.73 16 18 N -0.91 -27.63 12.46 55.49 0.69 -26.94 16 19 Si 1.06 25.45 29.98 -169.99 -5.10 20.35 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.16 3.83 4.46 -3.46 -0.02 3.82 16 24 C -0.15 -2.95 4.69 -26.36 -0.12 -3.07 16 25 H 0.07 0.94 7.26 -51.93 -0.38 0.57 16 26 H 0.04 0.50 7.92 -51.93 -0.41 0.09 16 27 H 0.07 1.03 7.02 -51.93 -0.36 0.66 16 28 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 29 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 32 H 0.10 1.50 8.05 -51.93 -0.42 1.08 16 33 H 0.40 5.63 7.27 -40.82 -0.30 5.33 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.25 6.17 -51.93 -0.32 0.93 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.01 0.23 6.94 -51.93 -0.36 -0.13 16 41 H 0.27 8.18 6.70 -40.82 -0.27 7.91 16 42 H 0.02 0.37 7.45 -51.93 -0.39 -0.01 16 43 H 0.07 2.03 6.38 -51.93 -0.33 1.70 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.53 6.20 -51.93 -0.32 1.21 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -30.93 340.76 -8.50 -39.43 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.68 Total: 6.44 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -0.92 Total: -8.23 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.01 Total: -53.50 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.05 Total: -9.62 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.10 Total: 20.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.93 -8.50 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045403521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.472 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds