Wall clock time and date at job start Tue Mar 31 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.90486 * 2 1 4 4 C 1.53948 * 113.53978 * 228.74733 * 2 1 3 5 5 C 1.53786 * 87.01781 * 270.80860 * 4 2 1 6 6 C 1.53778 * 87.17303 * 334.63960 * 5 4 2 7 7 H 1.08996 * 113.61356 * 270.75585 * 6 5 4 8 8 C 1.50694 * 113.61281 * 139.93863 * 6 5 4 9 9 O 1.21279 * 120.00093 * 337.19010 * 8 6 5 10 10 N 1.34780 * 119.99869 * 157.19222 * 8 6 5 11 11 C 1.46506 * 119.99974 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47051 * 180.02562 * 11 10 8 13 13 C 1.53780 * 113.61615 * 272.49768 * 12 11 10 14 14 C 1.53778 * 87.08256 * 220.01834 * 13 12 11 15 15 N 1.46491 * 113.61696 * 270.88028 * 14 13 12 16 16 C 1.36936 * 120.00686 * 252.49703 * 15 14 13 17 17 H 1.08006 * 119.99316 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00550 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47152 * 89.99858 * 20 18 16 22 22 H 1.48501 * 109.47384 * 210.00082 * 20 18 16 23 23 H 1.48504 * 109.47192 * 330.00306 * 20 18 16 24 24 C 1.53775 * 87.08300 * 25.43340 * 14 13 12 25 25 H 1.08993 * 109.47458 * 294.07942 * 1 2 3 26 26 H 1.08998 * 109.47193 * 54.08598 * 1 2 3 27 27 H 1.09004 * 109.46441 * 174.08197 * 1 2 3 28 28 H 1.09002 * 109.47398 * 191.24510 * 3 2 1 29 29 H 1.08997 * 109.47418 * 311.25074 * 3 2 1 30 30 H 1.09002 * 109.47048 * 71.25169 * 3 2 1 31 31 H 1.09002 * 113.61580 * 156.29227 * 4 2 1 32 32 H 1.08998 * 113.66904 * 25.33356 * 4 2 1 33 33 H 1.08998 * 113.61509 * 220.04424 * 5 4 2 34 34 H 1.09004 * 113.61261 * 89.23137 * 5 4 2 35 35 H 0.96998 * 120.00501 * 359.97438 * 10 8 6 36 36 H 1.09000 * 109.47068 * 300.00015 * 11 10 8 37 37 H 1.09003 * 109.47093 * 60.00160 * 11 10 8 38 38 H 1.09005 * 112.85354 * 43.80419 * 12 11 10 39 39 H 1.09003 * 113.61270 * 334.56738 * 13 12 11 40 40 H 1.09002 * 113.61541 * 105.46892 * 13 12 11 41 41 H 1.09004 * 113.69087 * 139.98702 * 14 13 12 42 42 H 0.97000 * 119.99791 * 72.49794 * 15 14 13 43 43 H 0.96996 * 119.99964 * 180.02562 * 19 18 16 44 44 H 1.08999 * 113.62027 * 220.01872 * 24 14 13 45 45 H 1.08999 * 113.61849 * 89.11049 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1449 -0.9306 -1.0611 5 6 2.0931 -2.0425 0.0001 6 6 2.1460 -0.9290 1.0594 7 1 3.1590 -0.6508 1.3501 8 6 1.2453 -1.1773 2.2417 9 8 0.2905 -1.9170 2.1319 10 7 1.5007 -0.5772 3.4212 11 6 0.6247 -0.8181 4.5706 12 6 1.1329 -0.0230 5.7747 13 6 2.1858 -0.7726 6.6080 14 6 1.4895 -0.2034 7.8554 15 7 2.0110 1.0995 8.2754 16 6 2.7825 1.1973 9.4025 17 1 3.0069 0.3137 9.9816 18 6 3.2771 2.4319 9.8002 19 7 3.0041 3.5086 9.0943 20 14 4.3301 2.5650 11.3374 21 1 5.7593 2.3874 10.9752 22 1 4.1383 3.9020 11.9545 23 1 3.9299 1.5114 12.3044 24 6 0.2126 -0.1103 7.0037 25 1 -0.3634 0.4193 0.9382 26 1 -0.3633 0.6028 -0.8323 27 1 -0.3632 -1.0223 -0.1060 28 1 3.1954 1.3518 -0.2004 29 1 1.6428 2.0078 -0.7726 30 1 1.9627 1.8726 0.9732 31 1 3.1576 -0.6519 -1.3523 32 1 1.4924 -1.1116 -1.9153 33 1 2.9718 -2.6874 0.0001 34 1 1.1575 -2.6019 0.0010 35 1 2.2645 0.0142 3.5092 36 1 -0.3893 -0.5003 4.3275 37 1 0.6245 -1.8814 4.8107 38 1 1.4224 0.9960 5.5176 39 1 2.1162 -1.8573 6.5259 40 1 3.2005 -0.4006 6.4664 41 1 1.4146 -0.9145 8.6781 42 1 1.8098 1.8931 7.7552 43 1 3.3500 4.3712 9.3719 44 1 -0.3658 0.7963 7.1813 45 1 -0.3965 -1.0139 7.0296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091192607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:10 Heat of formation + Delta-G solvation = -3.271155 kcal Electronic energy + Delta-G solvation = -22048.397347 eV Core-core repulsion = 18873.732863 eV Total energy + Delta-G solvation = -3174.664485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86491 -38.92863 -37.79767 -34.58047 -33.19121 -30.95548 -30.24774 -28.23916 -27.62315 -26.03100 -25.05754 -23.68055 -22.70077 -21.71817 -20.71520 -18.71658 -18.23517 -17.38752 -17.04989 -15.95434 -15.56737 -15.10452 -14.97936 -14.52588 -14.34184 -13.92646 -13.70604 -13.47041 -13.13060 -12.98607 -12.89940 -12.40139 -12.26752 -12.18481 -11.93045 -11.68675 -11.55242 -11.37440 -11.05771 -11.05156 -10.85306 -10.59680 -10.49208 -10.31667 -10.19595 -10.03035 -9.70820 -9.64540 -9.38000 -8.94342 -8.88173 -7.02020 -5.82694 -3.11731 2.63075 3.29359 3.40389 3.45870 3.47432 4.16027 4.34925 4.45820 4.53221 4.54093 4.93785 4.98536 5.06741 5.13155 5.23827 5.26220 5.35033 5.39330 5.43879 5.48848 5.55568 5.63356 5.66703 5.71373 5.71848 5.80404 5.85108 5.88064 5.97301 6.00922 6.11400 6.13346 6.20931 6.28369 6.36555 6.47998 6.59927 6.73613 6.90100 7.03405 7.59731 7.67196 8.29893 8.36577 9.47213 10.04797 10.39050 11.39779 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.003054 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.418358 B = 9165.688444 C = 9628.895475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.119 4.119 6 C -0.134 4.134 7 H 0.106 0.894 8 C 0.522 3.478 9 O -0.546 6.546 10 N -0.724 5.724 11 C 0.131 3.869 12 C -0.119 4.119 13 C -0.168 4.168 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.148 4.148 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.401 0.599 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 -7.736 -19.435 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.170 4.170 5 C -0.156 4.156 6 C -0.156 4.156 7 H 0.124 0.876 8 C 0.309 3.691 9 O -0.424 6.424 10 N -0.374 5.374 11 C 0.007 3.993 12 C -0.138 4.138 13 C -0.209 4.209 14 C 0.055 3.945 15 N -0.345 5.345 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.188 4.188 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.235 0.765 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.978 -8.257 -19.292 21.195 hybrid contribution 1.018 0.778 0.754 1.487 sum -1.960 -7.479 -18.539 20.087 Atomic orbital electron populations 1.21633 0.92495 1.02825 1.01760 1.21736 0.96142 0.94037 0.94658 1.21795 1.00501 0.95142 1.02293 1.23049 1.01070 0.96110 0.96746 1.22792 1.03345 0.95656 0.93840 1.22939 0.99656 1.00115 0.92843 0.87570 1.20404 0.85564 0.79554 0.83591 1.90652 1.30244 1.37432 1.84022 1.46161 1.31527 1.48947 1.10790 1.21454 0.93385 0.99865 0.84569 1.22701 0.98968 0.99629 0.92479 1.23883 0.98747 0.98300 0.99980 1.21054 0.91159 0.89365 0.92929 1.42170 1.59657 1.03078 1.29547 1.19294 1.23253 0.93545 1.01239 0.90997 1.24761 1.01286 0.95523 0.99312 1.69659 1.49708 0.98353 1.40365 0.86169 0.80253 0.76928 0.82711 1.21677 1.21743 1.20686 1.23445 0.97883 1.01648 0.95825 0.92456 0.92409 0.91355 0.92266 0.92226 0.92191 0.89890 0.91003 0.91164 0.88617 0.76467 0.92045 0.91728 0.88974 0.91441 0.91551 0.91986 0.78123 0.93437 0.91359 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 7.76 37.16 0.29 -1.02 16 2 C -0.07 -0.58 1.31 -153.61 -0.20 -0.78 16 3 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 4 C -0.13 -1.02 7.23 -25.83 -0.19 -1.20 16 5 C -0.12 -1.09 7.17 -25.92 -0.19 -1.27 16 6 C -0.13 -1.32 3.66 -90.96 -0.33 -1.65 16 7 H 0.11 0.89 8.10 -51.93 -0.42 0.47 16 8 C 0.52 6.74 6.15 -10.99 -0.07 6.68 16 9 O -0.55 -8.77 14.83 5.56 0.08 -8.68 16 10 N -0.72 -8.96 5.56 -60.29 -0.33 -9.29 16 11 C 0.13 1.78 5.51 -4.04 -0.02 1.76 16 12 C -0.12 -1.78 3.63 -89.81 -0.33 -2.11 16 13 C -0.17 -2.80 7.43 -25.92 -0.19 -2.99 16 14 C 0.17 3.26 4.56 -67.13 -0.31 2.95 16 15 N -0.71 -17.33 5.31 -52.65 -0.28 -17.61 16 16 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 20 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.15 -2.39 7.39 -25.92 -0.19 -2.58 16 25 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.76 6.76 -51.93 -0.35 0.41 16 28 H 0.06 0.41 7.95 -51.93 -0.41 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.54 7.97 -51.93 -0.41 0.13 16 32 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 1.03 6.84 -51.93 -0.36 0.67 16 35 H 0.40 4.37 8.47 -40.82 -0.35 4.02 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.38 9.97 7.90 -40.82 -0.32 9.65 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -30.66 359.08 -9.08 -39.73 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -8.03 Total: 10.57 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.63 Total: -10.23 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.11 Total: -53.85 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.66 -9.08 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091192607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.461 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds