Wall clock time and date at job start Tue Mar 31 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.90486 * 2 1 4 4 C 1.53948 * 113.53978 * 228.74733 * 2 1 3 5 5 C 1.53786 * 87.01781 * 270.80860 * 4 2 1 6 6 C 1.53778 * 87.17303 * 334.63960 * 5 4 2 7 7 H 1.08996 * 113.61356 * 270.75585 * 6 5 4 8 8 C 1.50694 * 113.61281 * 139.93863 * 6 5 4 9 9 O 1.21279 * 120.00093 * 337.19010 * 8 6 5 10 10 N 1.34780 * 119.99869 * 157.19222 * 8 6 5 11 11 C 1.46506 * 119.99974 * 179.97438 * 10 8 6 12 12 C 1.52994 * 109.47051 * 180.02562 * 11 10 8 13 13 C 1.53780 * 113.61615 * 272.49768 * 12 11 10 14 14 C 1.53778 * 87.08256 * 220.01834 * 13 12 11 15 15 N 1.46491 * 113.61696 * 270.88028 * 14 13 12 16 16 C 1.36936 * 120.00686 * 252.49703 * 15 14 13 17 17 H 1.08006 * 119.99316 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00550 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47152 * 89.99858 * 20 18 16 22 22 H 1.48501 * 109.47384 * 210.00082 * 20 18 16 23 23 H 1.48504 * 109.47192 * 330.00306 * 20 18 16 24 24 C 1.53775 * 87.08300 * 25.43340 * 14 13 12 25 25 H 1.08993 * 109.47458 * 294.07942 * 1 2 3 26 26 H 1.08998 * 109.47193 * 54.08598 * 1 2 3 27 27 H 1.09004 * 109.46441 * 174.08197 * 1 2 3 28 28 H 1.09002 * 109.47398 * 191.24510 * 3 2 1 29 29 H 1.08997 * 109.47418 * 311.25074 * 3 2 1 30 30 H 1.09002 * 109.47048 * 71.25169 * 3 2 1 31 31 H 1.09002 * 113.61580 * 156.29227 * 4 2 1 32 32 H 1.08998 * 113.66904 * 25.33356 * 4 2 1 33 33 H 1.08998 * 113.61509 * 220.04424 * 5 4 2 34 34 H 1.09004 * 113.61261 * 89.23137 * 5 4 2 35 35 H 0.96998 * 120.00501 * 359.97438 * 10 8 6 36 36 H 1.09000 * 109.47068 * 300.00015 * 11 10 8 37 37 H 1.09003 * 109.47093 * 60.00160 * 11 10 8 38 38 H 1.09005 * 112.85354 * 43.80419 * 12 11 10 39 39 H 1.09003 * 113.61270 * 334.56738 * 13 12 11 40 40 H 1.09002 * 113.61541 * 105.46892 * 13 12 11 41 41 H 1.09004 * 113.69087 * 139.98702 * 14 13 12 42 42 H 0.97000 * 119.99791 * 72.49794 * 15 14 13 43 43 H 0.96996 * 119.99964 * 180.02562 * 19 18 16 44 44 H 1.08999 * 113.62027 * 220.01872 * 24 14 13 45 45 H 1.08999 * 113.61849 * 89.11049 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1449 -0.9306 -1.0611 5 6 2.0931 -2.0425 0.0001 6 6 2.1460 -0.9290 1.0594 7 1 3.1590 -0.6508 1.3501 8 6 1.2453 -1.1773 2.2417 9 8 0.2905 -1.9170 2.1319 10 7 1.5007 -0.5772 3.4212 11 6 0.6247 -0.8181 4.5706 12 6 1.1329 -0.0230 5.7747 13 6 2.1858 -0.7726 6.6080 14 6 1.4895 -0.2034 7.8554 15 7 2.0110 1.0995 8.2754 16 6 2.7825 1.1973 9.4025 17 1 3.0069 0.3137 9.9816 18 6 3.2771 2.4319 9.8002 19 7 3.0041 3.5086 9.0943 20 14 4.3301 2.5650 11.3374 21 1 5.7593 2.3874 10.9752 22 1 4.1383 3.9020 11.9545 23 1 3.9299 1.5114 12.3044 24 6 0.2126 -0.1103 7.0037 25 1 -0.3634 0.4193 0.9382 26 1 -0.3633 0.6028 -0.8323 27 1 -0.3632 -1.0223 -0.1060 28 1 3.1954 1.3518 -0.2004 29 1 1.6428 2.0078 -0.7726 30 1 1.9627 1.8726 0.9732 31 1 3.1576 -0.6519 -1.3523 32 1 1.4924 -1.1116 -1.9153 33 1 2.9718 -2.6874 0.0001 34 1 1.1575 -2.6019 0.0010 35 1 2.2645 0.0142 3.5092 36 1 -0.3893 -0.5003 4.3275 37 1 0.6245 -1.8814 4.8107 38 1 1.4224 0.9960 5.5176 39 1 2.1162 -1.8573 6.5259 40 1 3.2005 -0.4006 6.4664 41 1 1.4146 -0.9145 8.6781 42 1 1.8098 1.8931 7.7552 43 1 3.3500 4.3712 9.3719 44 1 -0.3658 0.7963 7.1813 45 1 -0.3965 -1.0139 7.0296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091192607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:10 Heat of formation + Delta-G solvation = -21.995108 kcal Electronic energy + Delta-G solvation = -22049.209279 eV Core-core repulsion = 18873.732863 eV Total energy + Delta-G solvation = -3175.476416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73343 -40.24113 -38.84088 -35.96212 -34.92122 -32.11363 -31.64495 -29.44030 -28.34657 -27.09171 -26.44944 -25.56547 -23.46586 -23.03776 -21.71055 -19.95967 -19.42207 -19.10618 -18.09313 -17.06390 -16.67356 -16.54986 -15.96834 -15.87709 -15.64116 -15.12806 -15.06498 -14.65756 -14.27937 -14.16057 -13.87308 -13.68912 -13.30591 -13.15194 -12.97011 -12.93806 -12.89862 -12.62192 -12.35353 -12.27092 -12.17271 -12.06761 -11.80710 -11.52746 -11.48016 -11.31081 -11.00600 -10.98528 -10.86033 -10.49284 -10.01411 -9.00821 -7.95856 -5.24303 1.48058 1.49051 1.57628 1.63847 2.29850 2.55461 3.36728 3.45478 3.61682 3.66932 3.71828 3.78584 3.83738 3.87234 4.13745 4.21569 4.29496 4.31485 4.39700 4.55549 4.67929 4.69271 4.72177 4.76162 4.81420 4.91167 4.93831 4.95976 4.97816 5.03370 5.10378 5.14558 5.19594 5.28096 5.30472 5.35445 5.44889 5.49759 5.55287 5.58925 5.65332 6.27818 6.60834 7.29585 7.32833 8.09560 8.32189 9.27425 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.003054 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.418358 B = 9165.688444 C = 9628.895475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.136 4.136 7 H 0.126 0.874 8 C 0.520 3.480 9 O -0.581 6.581 10 N -0.721 5.721 11 C 0.141 3.859 12 C -0.101 4.101 13 C -0.152 4.152 14 C 0.144 3.856 15 N -0.720 5.720 16 C -0.243 4.243 17 H 0.076 0.924 18 C -0.074 4.074 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.270 1.270 24 C -0.136 4.136 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.057 0.943 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 -8.568 -20.441 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.067 4.067 3 C -0.195 4.195 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.157 4.157 7 H 0.144 0.856 8 C 0.308 3.692 9 O -0.461 6.461 10 N -0.371 5.371 11 C 0.017 3.983 12 C -0.120 4.120 13 C -0.193 4.193 14 C 0.034 3.966 15 N -0.358 5.358 16 C -0.375 4.375 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.214 1.214 22 H -0.223 1.223 23 H -0.195 1.195 24 C -0.175 4.175 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.245 0.755 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.142 -9.134 -20.306 22.368 hybrid contribution 0.692 0.955 1.053 1.581 sum -1.449 -8.178 -19.253 20.968 Atomic orbital electron populations 1.21587 0.93728 1.01898 1.01232 1.21760 0.95214 0.94862 0.94876 1.21789 1.01413 0.94290 1.02016 1.23029 1.02114 0.94383 0.96122 1.22778 1.02856 0.95970 0.94304 1.23096 0.99933 1.01010 0.91640 0.85599 1.20976 0.85418 0.78668 0.84180 1.90636 1.31880 1.39020 1.84579 1.46144 1.31540 1.48960 1.10487 1.21245 0.93352 0.99371 0.84354 1.22476 0.97802 0.98987 0.92717 1.23702 0.97844 0.99588 0.98151 1.21374 0.93606 0.87468 0.94125 1.42300 1.59909 1.04579 1.29031 1.19669 1.22529 0.93595 1.01720 0.90599 1.25544 1.03266 0.95395 1.02453 1.69808 1.51395 0.98585 1.42126 0.85154 0.78552 0.76669 0.79474 1.21375 1.22280 1.19497 1.23355 0.96728 1.02469 0.94952 0.94499 0.90938 0.92898 0.90813 0.91569 0.93175 0.87913 0.90448 0.89914 0.90707 0.75506 0.92393 0.91733 0.90129 0.89158 0.93280 0.92236 0.79352 0.93993 0.92422 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.76 71.98 0.56 -1.94 16 2 C -0.07 -1.07 1.31 -51.60 -0.07 -1.14 16 3 C -0.14 -1.89 9.20 71.98 0.66 -1.23 16 4 C -0.12 -1.53 7.23 31.18 0.23 -1.30 16 5 C -0.12 -2.03 7.17 31.12 0.22 -1.81 16 6 C -0.14 -2.44 3.66 -11.02 -0.04 -2.48 16 7 H 0.13 1.77 8.10 -2.39 -0.02 1.75 16 8 C 0.52 12.99 6.15 87.65 0.54 13.53 16 9 O -0.58 -18.62 14.83 -3.03 -0.04 -18.66 16 10 N -0.72 -17.04 5.56 -463.06 -2.57 -19.62 16 11 C 0.14 3.65 5.51 86.38 0.48 4.12 16 12 C -0.10 -2.92 3.63 -10.27 -0.04 -2.96 16 13 C -0.15 -4.87 7.43 31.12 0.23 -4.64 16 14 C 0.14 5.52 4.56 45.52 0.21 5.73 16 15 N -0.72 -35.61 5.31 -320.47 -1.70 -37.32 16 16 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 17 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 18 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 19 N -0.97 -58.42 13.06 21.65 0.28 -58.14 16 20 Si 0.97 45.58 29.55 68.60 2.03 47.60 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 C -0.14 -4.20 7.39 31.12 0.23 -3.97 16 25 H 0.04 0.85 7.67 -2.39 -0.02 0.83 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.19 6.76 -2.38 -0.02 1.17 16 28 H 0.07 0.80 7.95 -2.39 -0.02 0.78 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.96 7.97 -2.39 -0.02 0.94 16 32 H 0.08 0.93 8.10 -2.39 -0.02 0.91 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.59 6.84 -2.38 -0.02 1.57 16 35 H 0.41 8.38 8.47 -92.71 -0.79 7.59 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.72 7.84 -2.39 -0.02 1.70 16 38 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.09 2.50 7.90 -2.39 -0.02 2.48 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 2.29 8.10 -2.38 -0.02 2.27 16 42 H 0.37 19.80 7.90 -92.71 -0.73 19.06 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.10 2.68 8.10 -2.39 -0.02 2.66 16 Total: -1.00 -66.24 359.08 1.95 -64.29 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -0.55 Total: 36.17 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.51 Total: -14.32 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.99 Total: -115.07 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.04 Total: -18.66 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -66.24 1.95 -64.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091192607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.292 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds