Wall clock time and date at job start Tue Mar 31 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 115.55219 * 2 1 4 4 C 1.50701 * 109.46790 * 279.69280 * 3 2 1 5 5 O 1.21286 * 120.00175 * 5.32946 * 4 3 2 6 6 N 1.34780 * 119.99915 * 185.33994 * 4 3 2 7 7 C 1.46502 * 120.00010 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47170 * 175.04968 * 7 6 4 9 9 N 1.46511 * 110.53818 * 58.57857 * 8 7 6 10 10 C 1.36940 * 119.99914 * 54.87566 * 9 8 7 11 11 H 1.08001 * 119.99733 * 5.62726 * 10 9 8 12 12 C 1.38806 * 119.99938 * 185.62406 * 10 9 8 13 13 N 1.31619 * 119.99908 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00077 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47389 * 89.99676 * 14 12 10 16 16 H 1.48504 * 109.47557 * 210.00038 * 14 12 10 17 17 H 1.48508 * 109.47091 * 330.00296 * 14 12 10 18 18 C 1.54880 * 110.48887 * 181.19103 * 8 7 6 19 19 C 1.54890 * 102.75130 * 156.61868 * 18 8 7 20 20 C 1.54260 * 104.19458 * 322.06255 * 19 18 8 21 21 C 1.53874 * 106.60015 * 23.60482 * 20 19 18 22 22 C 1.53001 * 117.52021 * 145.70082 * 2 1 3 23 23 C 1.53002 * 117.49865 * 214.33089 * 2 1 3 24 24 H 1.08999 * 109.47356 * 65.44247 * 1 2 3 25 25 H 1.08995 * 109.47506 * 185.44654 * 1 2 3 26 26 H 1.09009 * 109.46877 * 305.44713 * 1 2 3 27 27 H 1.08999 * 109.47289 * 159.68998 * 3 2 1 28 28 H 1.08996 * 109.47199 * 39.68879 * 3 2 1 29 29 H 0.97004 * 119.99580 * 359.97438 * 6 4 3 30 30 H 1.08994 * 109.47162 * 55.04892 * 7 6 4 31 31 H 1.08998 * 109.46696 * 295.04711 * 7 6 4 32 32 H 0.96996 * 119.99507 * 234.87341 * 9 8 7 33 33 H 0.97005 * 119.99914 * 179.97438 * 13 12 10 34 34 H 1.09004 * 110.75943 * 274.93705 * 18 8 7 35 35 H 1.09006 * 110.75432 * 38.30622 * 18 8 7 36 36 H 1.08996 * 110.48714 * 203.37832 * 19 18 8 37 37 H 1.09000 * 110.48267 * 80.74061 * 19 18 8 38 38 H 1.09003 * 110.03383 * 264.32294 * 20 19 18 39 39 H 1.09007 * 110.03346 * 142.89499 * 20 19 18 40 40 H 1.09000 * 110.03507 * 240.71323 * 21 20 19 41 41 H 1.09000 * 110.02858 * 119.28895 * 21 20 19 42 42 H 1.08994 * 117.49859 * 214.96979 * 22 2 1 43 43 H 1.09004 * 117.49487 * 359.97438 * 22 2 1 44 44 H 1.08995 * 117.49831 * 359.97173 * 23 2 1 45 45 H 1.09003 * 117.49840 * 144.99788 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1907 1.9367 -1.4006 5 8 1.6260 1.3378 -2.2913 6 7 2.8191 3.0997 -1.6633 7 6 2.8195 3.6408 -3.0248 8 6 3.4882 5.0169 -3.0265 9 7 4.8607 4.9221 -2.5226 10 6 5.7434 4.0490 -3.1004 11 1 5.4571 3.4971 -3.9835 12 6 7.0060 3.8735 -2.5511 13 7 7.3550 4.5466 -1.4753 14 14 8.2099 2.6821 -3.3388 15 1 9.0231 3.3987 -4.3539 16 1 9.1042 2.1196 -2.2953 17 1 7.4593 1.5806 -3.9938 18 6 3.4746 5.6245 -4.4511 19 6 3.5940 7.1441 -4.1758 20 6 2.7380 7.3680 -2.9122 21 6 2.6707 6.0155 -2.1814 22 6 2.2369 -1.1209 0.7646 23 6 2.2364 -1.1207 -0.7654 24 1 -0.3634 0.4271 -0.9347 25 1 -0.3634 -1.0230 0.0975 26 1 -0.3633 0.5961 0.8373 27 1 3.2161 1.2925 0.3567 28 1 1.6332 2.0493 0.6563 29 1 3.2706 3.5788 -0.9508 30 1 1.7928 3.7354 -3.3784 31 1 3.3700 2.9685 -3.6828 32 1 5.1440 5.4777 -1.7797 33 1 8.2373 4.4237 -1.0912 34 1 4.3264 5.2688 -5.0309 35 1 2.5377 5.3965 -4.9593 36 1 3.1949 7.7160 -5.0134 37 1 4.6322 7.4170 -3.9866 38 1 1.7355 7.6910 -3.1928 39 1 3.2060 8.1157 -2.2717 40 1 1.6355 5.6822 -2.1074 41 1 3.1061 6.1068 -1.1864 42 1 3.1721 -0.8750 1.2676 43 1 1.6119 -1.8585 1.2682 44 1 1.6112 -1.8583 -1.2685 45 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753667457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:25 Heat of formation + Delta-G solvation = -22.298803 kcal Electronic energy + Delta-G solvation = -22996.411623 eV Core-core repulsion = 19820.922038 eV Total energy + Delta-G solvation = -3175.489585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.62011 -38.41012 -37.10972 -33.97109 -33.22651 -30.73495 -29.62015 -28.32111 -28.20324 -27.30646 -24.27994 -23.25879 -22.28541 -20.52029 -19.73797 -18.99554 -18.42364 -17.03348 -16.46121 -15.80340 -15.37200 -15.20550 -14.58327 -14.47614 -14.08804 -13.93756 -13.46815 -13.32314 -13.05183 -12.63056 -12.51364 -12.28860 -12.02876 -11.52582 -11.38725 -11.35897 -11.16708 -10.99627 -10.83262 -10.73366 -10.63417 -10.49523 -10.31429 -10.13607 -10.00049 -9.82604 -9.71677 -9.65662 -9.16759 -8.89405 -8.32549 -7.02453 -5.82270 -3.11124 3.19595 3.40262 3.47149 3.48295 3.62233 4.12420 4.55343 4.75621 4.89000 5.03530 5.12305 5.14706 5.15493 5.23911 5.49629 5.56633 5.64267 5.67321 5.68736 5.74784 5.81787 5.92445 5.94451 5.97937 6.00406 6.10363 6.14755 6.15308 6.24733 6.28166 6.29356 6.36952 6.40119 6.48076 6.57187 6.67742 6.80071 6.82160 7.01616 7.16546 7.69642 8.17980 8.36486 8.83119 9.48491 10.02552 10.38372 11.39751 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.006081 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.559767 B = 4603.065006 C = 6182.242704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C -0.106 4.106 4 C 0.509 3.491 5 O -0.551 6.551 6 N -0.704 5.704 7 C 0.124 3.876 8 C 0.188 3.812 9 N -0.708 5.708 10 C -0.231 4.231 11 H 0.069 0.931 12 C -0.009 4.009 13 N -0.932 5.932 14 Si 0.900 3.100 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.282 1.282 18 C -0.132 4.132 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.182 4.182 23 C -0.156 4.156 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.403 0.597 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.385 0.615 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 -1.822 3.392 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.146 4.146 4 C 0.294 3.706 5 O -0.429 6.429 6 N -0.354 5.354 7 C -0.002 4.002 8 C 0.096 3.904 9 N -0.349 5.349 10 C -0.362 4.362 11 H 0.087 0.913 12 C -0.205 4.205 13 N -0.580 5.580 14 Si 0.731 3.269 15 H -0.218 1.218 16 H -0.219 1.219 17 H -0.208 1.208 18 C -0.173 4.173 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.161 4.161 22 C -0.219 4.219 23 C -0.193 4.193 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.238 0.762 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.219 0.781 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.290 -2.369 2.679 12.800 hybrid contribution 1.279 -0.234 0.147 1.309 sum -11.011 -2.603 2.825 11.662 Atomic orbital electron populations 1.21276 0.92040 1.01283 1.02118 1.21003 0.94716 0.89662 1.05358 1.21212 1.02478 0.95623 0.95334 1.20472 0.78704 0.80839 0.90550 1.90637 1.45398 1.59224 1.47659 1.45803 1.54368 1.23188 1.12069 1.21716 0.98776 0.96490 0.83244 1.20634 0.86411 0.90707 0.92648 1.42406 1.05188 1.47438 1.39896 1.19087 0.93606 1.16104 1.07383 0.91313 1.24672 0.97947 1.00153 0.97718 1.69650 1.20655 1.44807 1.22891 0.86295 0.81398 0.80954 0.78212 1.21791 1.21877 1.20802 1.22914 1.00674 0.95270 0.98410 1.22198 1.00230 0.96454 0.96232 1.22060 0.99155 0.97189 0.97254 1.22378 0.99496 0.94998 0.99264 1.23177 1.02260 1.01262 0.95197 1.22859 1.02459 1.00767 0.93219 0.91406 0.92915 0.92751 0.88975 0.88906 0.76238 0.92930 0.91914 0.78078 0.93596 0.90868 0.92896 0.93078 0.91248 0.92816 0.92447 0.92021 0.91685 0.88900 0.89049 0.89091 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.66 37.16 0.36 -0.95 16 2 C -0.11 -1.41 1.59 -154.51 -0.25 -1.65 16 3 C -0.11 -1.46 5.64 -27.88 -0.16 -1.62 16 4 C 0.51 8.78 7.69 -10.98 -0.08 8.70 16 5 O -0.55 -11.07 14.95 5.55 0.08 -10.99 16 6 N -0.70 -12.28 5.24 -60.29 -0.32 -12.60 16 7 C 0.12 2.28 4.24 -4.04 -0.02 2.27 16 8 C 0.19 3.39 0.53 -130.16 -0.07 3.32 16 9 N -0.71 -15.68 4.74 -45.70 -0.22 -15.90 16 10 C -0.23 -5.89 8.62 -15.06 -0.13 -6.02 16 11 H 0.07 1.78 7.12 -52.49 -0.37 1.41 16 12 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 13 N -0.93 -26.48 13.07 55.49 0.73 -25.75 16 14 Si 0.90 22.00 29.55 -169.99 -5.02 16.97 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C -0.13 -2.27 5.92 -24.74 -0.15 -2.42 16 19 C -0.11 -1.77 6.79 -25.07 -0.17 -1.94 16 20 C -0.12 -1.69 6.80 -25.62 -0.17 -1.86 16 21 C -0.12 -1.88 5.65 -25.62 -0.14 -2.03 16 22 C -0.18 -2.11 9.86 -26.73 -0.26 -2.38 16 23 C -0.16 -2.16 9.19 -26.73 -0.25 -2.41 16 24 H 0.07 0.93 7.60 -51.93 -0.39 0.53 16 25 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.09 1.24 7.95 -51.93 -0.41 0.83 16 28 H 0.09 1.07 8.13 -51.93 -0.42 0.65 16 29 H 0.40 6.86 8.07 -40.82 -0.33 6.53 16 30 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.06 1.34 7.27 -51.93 -0.38 0.96 16 32 H 0.38 9.18 7.51 -40.82 -0.31 8.87 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.07 1.41 7.50 -51.93 -0.39 1.02 16 35 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 40 H 0.06 0.87 7.81 -51.93 -0.41 0.47 16 41 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 42 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -28.83 359.03 -8.93 -37.77 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -8.01 Total: 14.41 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.58 Total: -9.33 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.19 Total: -54.24 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.83 -8.93 -37.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.467 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds