Wall clock time and date at job start Tue Mar 31 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47453 * 2 1 4 4 N 1.30174 * 126.80357 * 270.02727 * 3 2 1 5 5 O 1.20923 * 111.60479 * 179.97438 * 4 3 2 6 6 C 1.34039 * 111.56635 * 359.76087 * 5 4 3 7 7 C 1.50704 * 126.77774 * 180.28514 * 6 5 4 8 8 C 1.35448 * 106.44701 * 0.38104 * 6 5 4 9 9 C 1.50705 * 128.00877 * 179.90742 * 8 6 5 10 10 N 1.46901 * 109.47470 * 257.79722 * 9 8 6 11 11 C 1.46892 * 110.99939 * 201.33772 * 10 9 8 12 12 C 1.50700 * 109.46968 * 160.22519 * 11 10 9 13 13 H 1.08002 * 119.99876 * 4.72062 * 12 11 10 14 14 C 1.37877 * 120.00117 * 184.72050 * 12 11 10 15 15 N 1.31519 * 120.00215 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00215 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47267 * 59.99786 * 16 14 12 18 18 H 1.48499 * 109.47241 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46905 * 300.00141 * 16 14 12 20 20 C 1.46899 * 110.99542 * 77.38378 * 10 9 8 21 21 C 1.52998 * 109.46894 * 277.37090 * 20 10 9 22 22 C 1.53009 * 109.47069 * 177.59457 * 21 20 10 23 23 C 1.52999 * 109.47484 * 297.59375 * 21 20 10 24 24 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47029 * 300.00081 * 1 2 3 26 26 H 1.09007 * 109.47028 * 59.99719 * 1 2 3 27 27 H 1.09004 * 109.47491 * 240.00374 * 2 1 3 28 28 H 1.08994 * 109.47154 * 120.00022 * 2 1 3 29 29 H 1.08995 * 109.47209 * 274.38218 * 7 6 5 30 30 H 1.08998 * 109.47029 * 34.38391 * 7 6 5 31 31 H 1.09000 * 109.46848 * 154.38268 * 7 6 5 32 32 H 1.09005 * 109.46955 * 137.79656 * 9 8 6 33 33 H 1.09004 * 109.46948 * 17.80213 * 9 8 6 34 34 H 1.09002 * 109.47438 * 280.22132 * 11 10 9 35 35 H 1.09006 * 109.47306 * 40.22361 * 11 10 9 36 36 H 0.96993 * 120.00327 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.47584 * 37.37299 * 20 10 9 38 38 H 1.09002 * 109.46531 * 157.37707 * 20 10 9 39 39 H 1.08997 * 109.47415 * 57.59893 * 21 20 10 40 40 H 1.08998 * 109.46734 * 65.32745 * 22 21 20 41 41 H 1.08998 * 109.47321 * 185.32385 * 22 21 20 42 42 H 1.08999 * 109.46962 * 305.32841 * 22 21 20 43 43 H 1.09000 * 109.47252 * 184.96171 * 23 21 20 44 44 H 1.08994 * 109.47064 * 304.95919 * 23 21 20 45 45 H 1.09001 * 109.46982 * 64.95868 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1562 -1.0423 5 8 2.6806 3.2565 -0.7253 6 6 2.7255 3.3983 0.6068 7 6 3.1513 4.6263 1.3697 8 6 2.3147 2.2194 1.1321 9 6 2.1827 1.8471 2.5864 10 7 3.3258 1.0146 2.9845 11 6 3.0113 0.2276 4.1843 12 6 3.9645 -0.9352 4.2863 13 1 4.7746 -1.0331 3.5788 14 6 3.8023 -1.8741 5.2829 15 7 2.8155 -1.7553 6.1442 16 14 4.9842 -3.3151 5.4098 17 1 6.3640 -2.8069 5.6169 18 1 4.5954 -4.1747 6.5567 19 1 4.9323 -4.1098 4.1563 20 6 4.5269 1.8344 3.1925 21 6 5.2023 2.1003 1.8457 22 6 6.4193 3.0038 2.0549 23 6 5.6518 0.7738 1.2298 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.2347 4.6223 1.4892 30 1 2.8497 5.5181 0.8202 31 1 2.6774 4.6267 2.3513 32 1 1.2579 1.2900 2.7365 33 1 2.1639 2.7526 3.1930 34 1 3.1107 0.8574 5.0684 35 1 1.9892 -0.1452 4.1167 36 1 2.7012 -2.4160 6.8450 37 1 4.2450 2.7822 3.6510 38 1 5.2188 1.3053 3.8478 39 1 4.4964 2.5912 1.1758 40 1 7.1664 2.4755 2.6472 41 1 6.8447 3.2702 1.0874 42 1 6.1137 3.9092 2.5793 43 1 6.2101 0.9690 0.3142 44 1 6.2883 0.2421 1.9370 45 1 4.7773 0.1654 0.9994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757842595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:33 Heat of formation + Delta-G solvation = 42.942853 kcal Electronic energy + Delta-G solvation = -23812.623197 eV Core-core repulsion = 20639.962702 eV Total energy + Delta-G solvation = -3172.660495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.62181 -37.90372 -35.18448 -34.00773 -33.48982 -32.27745 -30.98906 -28.35937 -27.15454 -26.65848 -26.14359 -24.37981 -23.66612 -21.39007 -20.40803 -19.72854 -19.34369 -17.28131 -16.73877 -16.19708 -15.24067 -14.72707 -14.55534 -14.25654 -14.09989 -13.72193 -13.56065 -13.38895 -13.00291 -12.82068 -12.49101 -12.35612 -12.27671 -12.00362 -11.77749 -11.48284 -11.37036 -11.28792 -11.21109 -11.00539 -10.81814 -10.70198 -10.46617 -10.40587 -10.25202 -10.00916 -9.74495 -9.47437 -9.30432 -8.56878 -8.43064 -7.29544 -6.03490 -4.04203 1.75264 2.58480 3.32490 3.36862 3.39201 3.40193 4.41102 4.49477 4.73252 4.91872 5.14776 5.26024 5.32424 5.36629 5.40291 5.43456 5.47634 5.54570 5.54884 5.70313 5.71640 5.84298 5.93622 5.96785 6.04689 6.08277 6.13377 6.17607 6.22174 6.31029 6.32097 6.41112 6.46743 6.53359 6.59163 6.61878 6.93417 7.00795 7.21408 7.28488 7.81636 8.07820 8.18924 8.51497 8.62001 9.03784 9.59968 11.06906 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.006191 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.272860 B = 4521.392003 C = 5282.976591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.047 3.953 4 N -0.378 5.378 5 O 0.087 5.913 6 C -0.046 4.046 7 C -0.073 4.073 8 C -0.161 4.161 9 C 0.126 3.874 10 N -0.525 5.525 11 C 0.195 3.805 12 C -0.501 4.501 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.900 5.900 16 Si 0.895 3.105 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.070 3.930 21 C -0.105 4.105 22 C -0.146 4.146 23 C -0.128 4.128 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.037 0.963 34 H -0.011 1.011 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.019 0.981 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.030 0.970 44 H 0.049 0.951 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 10.520 -8.907 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.112 4.112 4 N -0.084 5.084 5 O 0.023 5.977 6 C -0.110 4.110 7 C -0.131 4.131 8 C -0.166 4.166 9 C -0.003 4.003 10 N -0.249 5.249 11 C 0.070 3.930 12 C -0.540 4.540 13 H 0.082 0.918 14 C -0.145 4.145 15 N -0.540 5.540 16 Si 0.723 3.277 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.058 4.058 21 C -0.124 4.124 22 C -0.204 4.204 23 C -0.185 4.185 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.007 0.993 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.452 9.893 -10.426 14.380 hybrid contribution 0.475 -0.380 1.621 1.731 sum 0.023 9.514 -8.805 12.963 Atomic orbital electron populations 1.21681 0.94567 1.02039 1.01704 1.19977 0.95724 0.88479 1.04537 1.23333 1.00886 0.98798 0.88139 1.73770 1.17646 0.92873 1.24142 1.84747 1.63383 1.27075 1.22455 1.23994 1.04030 0.99043 0.83933 1.20394 1.02734 0.91486 0.98468 1.21043 1.05093 0.92414 0.98011 1.20388 0.96175 0.96292 0.87407 1.61966 1.01416 1.22788 1.38693 1.19779 0.97462 0.91651 0.84093 1.21114 1.12845 1.07377 1.12614 0.91813 1.24957 0.95668 0.98107 0.95777 1.69936 1.30763 1.36146 1.17153 0.86615 0.81240 0.82389 0.77485 1.20362 1.21440 1.20210 1.22109 0.93450 0.94633 0.95631 1.21462 0.96449 0.96404 0.98087 1.21854 0.98557 0.99231 1.00758 1.21593 1.01215 0.97159 0.98558 0.91821 0.92419 0.93179 0.90837 0.87867 0.89511 0.90415 0.89375 0.90165 0.94517 0.99320 0.95030 0.92927 0.96280 0.90327 0.90751 0.92836 0.93404 0.93356 0.95068 0.93141 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 37.16 0.37 -1.49 16 2 C -0.05 -0.75 6.44 -27.88 -0.18 -0.93 16 3 C 0.05 0.77 6.58 -82.10 -0.54 0.23 16 4 N -0.38 -6.34 12.07 33.42 0.40 -5.94 16 5 O 0.09 1.35 11.20 17.18 0.19 1.54 16 6 C -0.05 -0.64 5.34 -35.30 -0.19 -0.83 16 7 C -0.07 -0.75 10.00 36.01 0.36 -0.39 16 8 C -0.16 -2.54 4.39 -104.42 -0.46 -3.00 16 9 C 0.13 2.13 5.41 -4.97 -0.03 2.11 16 10 N -0.52 -10.32 3.73 -237.51 -0.89 -11.21 16 11 C 0.19 4.72 4.70 -4.98 -0.02 4.70 16 12 C -0.50 -13.37 8.53 -34.44 -0.29 -13.67 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.07 1.26 4.25 -3.83 -0.02 1.25 16 21 C -0.11 -1.66 2.43 -90.62 -0.22 -1.88 16 22 C -0.15 -1.93 8.80 37.16 0.33 -1.60 16 23 C -0.13 -2.21 8.99 37.16 0.33 -1.87 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.09 0.86 6.52 -51.93 -0.34 0.52 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.85 7.15 -51.93 -0.37 0.48 16 32 H 0.08 1.39 7.56 -51.93 -0.39 1.00 16 33 H 0.04 0.58 6.57 -51.93 -0.34 0.24 16 34 H -0.01 -0.29 8.00 -51.93 -0.42 -0.70 16 35 H 0.03 0.82 7.58 -51.93 -0.39 0.43 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.02 0.32 7.57 -51.93 -0.39 -0.07 16 38 H 0.08 1.61 7.24 -51.93 -0.38 1.23 16 39 H 0.07 1.16 2.79 -51.93 -0.14 1.01 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.56 7.79 -51.93 -0.40 0.16 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 1.27 7.82 -51.93 -0.41 0.87 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -28.83 356.51 -7.61 -36.43 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.75 Total: -1.35 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -0.66 Total: -15.94 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.25 Total: -42.33 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.19 Total: 1.54 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.83 -7.61 -36.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757842595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.377 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds