Wall clock time and date at job start Tue Mar 31 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47453 * 2 1 4 4 N 1.30174 * 126.80357 * 270.02727 * 3 2 1 5 5 O 1.20923 * 111.60479 * 179.97438 * 4 3 2 6 6 C 1.34039 * 111.56635 * 359.76087 * 5 4 3 7 7 C 1.50704 * 126.77774 * 180.28514 * 6 5 4 8 8 C 1.35448 * 106.44701 * 0.38104 * 6 5 4 9 9 C 1.50705 * 128.00877 * 179.90742 * 8 6 5 10 10 N 1.46901 * 109.47470 * 257.79722 * 9 8 6 11 11 C 1.46892 * 110.99939 * 201.33772 * 10 9 8 12 12 C 1.50700 * 109.46968 * 160.22519 * 11 10 9 13 13 H 1.08002 * 119.99876 * 4.72062 * 12 11 10 14 14 C 1.37877 * 120.00117 * 184.72050 * 12 11 10 15 15 N 1.31519 * 120.00215 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00215 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47267 * 59.99786 * 16 14 12 18 18 H 1.48499 * 109.47241 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46905 * 300.00141 * 16 14 12 20 20 C 1.46899 * 110.99542 * 77.38378 * 10 9 8 21 21 C 1.52998 * 109.46894 * 277.37090 * 20 10 9 22 22 C 1.53009 * 109.47069 * 177.59457 * 21 20 10 23 23 C 1.52999 * 109.47484 * 297.59375 * 21 20 10 24 24 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47029 * 300.00081 * 1 2 3 26 26 H 1.09007 * 109.47028 * 59.99719 * 1 2 3 27 27 H 1.09004 * 109.47491 * 240.00374 * 2 1 3 28 28 H 1.08994 * 109.47154 * 120.00022 * 2 1 3 29 29 H 1.08995 * 109.47209 * 274.38218 * 7 6 5 30 30 H 1.08998 * 109.47029 * 34.38391 * 7 6 5 31 31 H 1.09000 * 109.46848 * 154.38268 * 7 6 5 32 32 H 1.09005 * 109.46955 * 137.79656 * 9 8 6 33 33 H 1.09004 * 109.46948 * 17.80213 * 9 8 6 34 34 H 1.09002 * 109.47438 * 280.22132 * 11 10 9 35 35 H 1.09006 * 109.47306 * 40.22361 * 11 10 9 36 36 H 0.96993 * 120.00327 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.47584 * 37.37299 * 20 10 9 38 38 H 1.09002 * 109.46531 * 157.37707 * 20 10 9 39 39 H 1.08997 * 109.47415 * 57.59893 * 21 20 10 40 40 H 1.08998 * 109.46734 * 65.32745 * 22 21 20 41 41 H 1.08998 * 109.47321 * 185.32385 * 22 21 20 42 42 H 1.08999 * 109.46962 * 305.32841 * 22 21 20 43 43 H 1.09000 * 109.47252 * 184.96171 * 23 21 20 44 44 H 1.08994 * 109.47064 * 304.95919 * 23 21 20 45 45 H 1.09001 * 109.46982 * 64.95868 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1562 -1.0423 5 8 2.6806 3.2565 -0.7253 6 6 2.7255 3.3983 0.6068 7 6 3.1513 4.6263 1.3697 8 6 2.3147 2.2194 1.1321 9 6 2.1827 1.8471 2.5864 10 7 3.3258 1.0146 2.9845 11 6 3.0113 0.2276 4.1843 12 6 3.9645 -0.9352 4.2863 13 1 4.7746 -1.0331 3.5788 14 6 3.8023 -1.8741 5.2829 15 7 2.8155 -1.7553 6.1442 16 14 4.9842 -3.3151 5.4098 17 1 6.3640 -2.8069 5.6169 18 1 4.5954 -4.1747 6.5567 19 1 4.9323 -4.1098 4.1563 20 6 4.5269 1.8344 3.1925 21 6 5.2023 2.1003 1.8457 22 6 6.4193 3.0038 2.0549 23 6 5.6518 0.7738 1.2298 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 4.2347 4.6223 1.4892 30 1 2.8497 5.5181 0.8202 31 1 2.6774 4.6267 2.3513 32 1 1.2579 1.2900 2.7365 33 1 2.1639 2.7526 3.1930 34 1 3.1107 0.8574 5.0684 35 1 1.9892 -0.1452 4.1167 36 1 2.7012 -2.4160 6.8450 37 1 4.2450 2.7822 3.6510 38 1 5.2188 1.3053 3.8478 39 1 4.4964 2.5912 1.1758 40 1 7.1664 2.4755 2.6472 41 1 6.8447 3.2702 1.0874 42 1 6.1137 3.9092 2.5793 43 1 6.2101 0.9690 0.3142 44 1 6.2883 0.2421 1.9370 45 1 4.7773 0.1654 0.9994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757842595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:31 Heat of formation + Delta-G solvation = 27.638658 kcal Electronic energy + Delta-G solvation = -23813.286837 eV Core-core repulsion = 20639.962702 eV Total energy + Delta-G solvation = -3173.324134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -45.85608 -39.37559 -36.41968 -35.60011 -34.74260 -34.07840 -32.18381 -29.80490 -28.68080 -27.89184 -27.47714 -25.92280 -25.03878 -23.00820 -21.82757 -20.99189 -20.60610 -18.53381 -18.46930 -17.76880 -16.81955 -16.39423 -15.86209 -15.70061 -15.38325 -15.12403 -14.90717 -14.52434 -14.24988 -14.10020 -13.85945 -13.66306 -13.52469 -13.22448 -13.15998 -13.03994 -12.88936 -12.69287 -12.54173 -12.47565 -12.41731 -12.25484 -12.00412 -11.74696 -11.61867 -11.45608 -11.40126 -11.25212 -10.69291 -10.55507 -9.79062 -8.92340 -8.15017 -6.22892 0.58759 1.31954 1.41449 1.42852 1.50671 2.29027 2.42440 3.16210 3.23623 3.45486 3.63904 3.87737 4.09469 4.12955 4.23873 4.26301 4.38823 4.43988 4.46727 4.57328 4.65308 4.66416 4.74870 4.76631 4.85727 4.91338 4.93445 4.98584 5.00786 5.05313 5.09765 5.16665 5.19601 5.25655 5.27066 5.30881 5.36896 5.37587 5.60599 5.62690 5.73085 6.13799 6.47128 6.68951 6.92826 7.42444 7.45761 8.94519 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.006191 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.272860 B = 4521.392003 C = 5282.976591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 C 0.038 3.962 4 N -0.395 5.395 5 O 0.088 5.912 6 C -0.024 4.024 7 C -0.077 4.077 8 C -0.183 4.183 9 C 0.132 3.868 10 N -0.529 5.529 11 C 0.212 3.788 12 C -0.509 4.509 13 H 0.058 0.942 14 C 0.006 3.994 15 N -0.933 5.933 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.073 3.927 21 C -0.097 4.097 22 C -0.142 4.142 23 C -0.124 4.124 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.054 0.946 34 H -0.035 1.035 35 H 0.007 0.993 36 H 0.262 0.738 37 H 0.037 0.963 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 12.131 -9.806 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 C -0.121 4.121 4 N -0.103 5.103 5 O 0.025 5.975 6 C -0.088 4.088 7 C -0.134 4.134 8 C -0.188 4.188 9 C 0.004 3.996 10 N -0.253 5.253 11 C 0.087 3.913 12 C -0.548 4.548 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.574 5.574 16 Si 0.782 3.218 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.055 4.055 21 C -0.116 4.116 22 C -0.200 4.200 23 C -0.181 4.181 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.072 0.928 34 H -0.017 1.017 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.499 11.521 -11.345 16.177 hybrid contribution 0.172 -0.817 1.870 2.048 sum 0.671 10.704 -9.475 14.311 Atomic orbital electron populations 1.21630 0.92953 1.02943 1.01735 1.19935 0.97127 0.88126 1.03423 1.23517 1.00887 0.99168 0.88511 1.73761 1.18680 0.93432 1.24414 1.84730 1.63064 1.26565 1.23117 1.24602 1.01390 0.99468 0.83340 1.20655 1.03447 0.90663 0.98631 1.20856 1.07438 0.93509 0.96979 1.20284 0.94492 0.96223 0.88622 1.61872 1.03106 1.24211 1.36133 1.19384 0.95525 0.91369 0.85064 1.21392 1.12941 1.08176 1.12271 0.92346 1.25738 0.97203 1.00713 0.95512 1.70050 1.32367 1.37172 1.17818 0.85637 0.79377 0.79268 0.77539 1.19594 1.20976 1.19783 1.22109 0.92162 0.94488 0.96752 1.21409 0.97607 0.96157 0.96403 1.21819 0.96976 0.99246 1.01925 1.21537 0.99944 0.97594 0.99063 0.90535 0.92900 0.92492 0.90468 0.90335 0.88335 0.87573 0.88520 0.91384 0.92812 1.01699 0.97470 0.92879 0.94531 0.93262 0.90101 0.93419 0.91772 0.91252 0.93413 0.94516 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.89 71.98 0.71 -2.79 16 2 C -0.05 -1.48 6.44 29.85 0.19 -1.29 16 3 C 0.04 1.22 6.58 43.58 0.29 1.50 16 4 N -0.40 -12.83 12.07 -49.55 -0.60 -13.42 16 5 O 0.09 2.53 11.20 71.64 0.80 3.34 16 6 C -0.02 -0.60 5.34 25.04 0.13 -0.47 16 7 C -0.08 -1.27 10.00 71.24 0.71 -0.56 16 8 C -0.18 -5.60 4.39 -19.73 -0.09 -5.68 16 9 C 0.13 4.46 5.41 85.56 0.46 4.92 16 10 N -0.53 -21.20 3.73 -905.36 -3.38 -24.58 16 11 C 0.21 10.70 4.70 85.56 0.40 11.10 16 12 C -0.51 -27.97 8.53 25.60 0.22 -27.75 16 13 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 14 C 0.01 0.35 5.46 84.65 0.46 0.81 16 15 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 16 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 C 0.07 2.59 4.25 86.30 0.37 2.95 16 21 C -0.10 -2.90 2.43 -10.79 -0.03 -2.92 16 22 C -0.14 -3.32 8.80 71.99 0.63 -2.68 16 23 C -0.12 -4.22 8.99 71.98 0.65 -3.57 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.10 1.48 6.52 -2.39 -0.02 1.47 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.49 7.15 -2.39 -0.02 1.47 16 32 H 0.07 2.44 7.56 -2.38 -0.02 2.42 16 33 H 0.05 1.62 6.57 -2.38 -0.02 1.60 16 34 H -0.03 -1.88 8.00 -2.39 -0.02 -1.90 16 35 H 0.01 0.39 7.58 -2.38 -0.02 0.37 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.04 1.16 7.57 -2.39 -0.02 1.14 16 38 H 0.05 2.04 7.24 -2.39 -0.02 2.02 16 39 H 0.08 2.32 2.79 -2.39 -0.01 2.31 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.34 7.79 -2.39 -0.02 1.32 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.04 1.51 7.82 -2.39 -0.02 1.50 16 Total: -1.00 -63.22 356.51 5.20 -58.02 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.95 Total: 11.57 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 5.12 Total: -26.44 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -3.69 Total: -92.65 kcal Atomic # 8 Polarization: 2.53 SS G_CDS: 0.80 Total: 3.34 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -63.22 5.20 -58.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757842595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.659 kcal (2) G-P(sol) polarization free energy of solvation -63.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds