Wall clock time and date at job start Tue Mar 31 2020 01:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 C 1.50693 * 115.55267 * 302.74404 * 3 2 1 5 5 O 1.21276 * 120.00628 * 112.84570 * 4 3 2 6 6 N 1.34783 * 119.99916 * 292.84487 * 4 3 2 7 7 C 1.46997 * 120.61266 * 355.63588 * 6 4 3 8 8 C 1.53196 * 108.73900 * 126.38661 * 7 6 4 9 9 C 1.53034 * 109.33810 * 54.62237 * 8 7 6 10 10 C 1.53040 * 109.53890 * 298.61496 * 9 8 7 11 11 H 1.08997 * 109.49991 * 301.41923 * 10 9 8 12 12 N 1.46497 * 109.50005 * 181.35302 * 10 9 8 13 13 C 1.46507 * 119.99925 * 300.00190 * 12 10 9 14 14 C 1.36934 * 120.00323 * 120.00417 * 12 10 9 15 15 H 1.07994 * 120.00134 * 23.57631 * 14 12 10 16 16 C 1.38817 * 119.99975 * 203.57868 * 14 12 10 17 17 N 1.31621 * 119.99928 * 14.04032 * 16 14 12 18 18 Si 1.86800 * 119.99871 * 194.04277 * 16 14 12 19 19 H 1.48501 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46705 * 119.99890 * 18 16 14 21 21 H 1.48493 * 109.47135 * 239.99812 * 18 16 14 22 22 C 1.46925 * 120.63344 * 175.60996 * 6 4 3 23 23 C 1.53004 * 117.49744 * 88.40924 * 3 2 1 24 24 C 1.53002 * 117.49739 * 157.07098 * 3 2 1 25 25 H 1.09007 * 109.47204 * 306.80972 * 1 2 3 26 26 H 1.09000 * 109.47020 * 66.80365 * 1 2 3 27 27 H 1.08995 * 109.47182 * 186.80993 * 1 2 3 28 28 H 1.08994 * 109.47251 * 240.00021 * 2 1 3 29 29 H 1.09004 * 109.46922 * 119.99847 * 2 1 3 30 30 H 1.09006 * 109.62780 * 6.59480 * 7 6 4 31 31 H 1.08997 * 109.58004 * 246.15020 * 7 6 4 32 32 H 1.09001 * 109.49674 * 294.64907 * 8 7 6 33 33 H 1.08995 * 109.49497 * 174.59246 * 8 7 6 34 34 H 1.08996 * 109.46312 * 58.64150 * 9 8 7 35 35 H 1.09002 * 109.45876 * 178.60333 * 9 8 7 36 36 H 1.08995 * 109.46945 * 90.64721 * 13 12 10 37 37 H 1.08994 * 109.47416 * 210.65172 * 13 12 10 38 38 H 1.09002 * 109.46969 * 330.64966 * 13 12 10 39 39 H 0.96995 * 119.99826 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.58512 * 113.84352 * 22 6 4 41 41 H 1.09000 * 109.70047 * 353.48992 * 22 6 4 42 42 H 1.09000 * 117.49730 * 214.99953 * 23 3 2 43 43 H 1.08995 * 117.49989 * 0.02562 * 23 3 2 44 44 H 1.08996 * 117.49732 * 359.97438 * 24 3 2 45 45 H 1.08997 * 117.49961 * 144.97898 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5634 2.3004 -1.1435 5 8 0.8164 3.2322 -0.9323 6 7 1.9673 2.0323 -2.4011 7 6 2.9464 0.9673 -2.6618 8 6 2.3652 0.0095 -3.7067 9 6 1.9538 0.8034 -4.9486 10 6 0.8732 1.8194 -4.5719 11 1 0.0147 1.2976 -4.1490 12 7 0.4570 2.5567 -5.7674 13 6 1.4363 3.3448 -6.5200 14 6 -0.8473 2.5092 -6.1816 15 1 -1.6299 2.2740 -5.4756 16 6 -1.1637 2.7636 -7.5091 17 7 -0.2146 2.7765 -8.4210 18 14 -2.9363 3.0876 -8.0013 19 1 -3.8046 3.0180 -6.7985 20 1 -3.0421 4.4379 -8.6101 21 1 -3.3714 2.0650 -8.9863 22 6 1.4370 2.7984 -3.5371 23 6 2.2400 2.1211 1.3567 24 6 3.4540 1.6918 0.5287 25 1 -0.3634 0.6158 0.8228 26 1 -0.3633 0.4048 -0.9446 27 1 -0.3633 -1.0204 0.1219 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.1493 0.4227 -1.7396 31 1 3.8699 1.4049 -3.0409 32 1 1.4927 -0.4954 -3.2920 33 1 3.1175 -0.7302 -3.9804 34 1 2.8217 1.3277 -5.3485 35 1 1.5629 0.1206 -5.7031 36 1 1.8850 2.7229 -7.2945 37 1 0.9388 4.1976 -6.9816 38 1 2.2137 3.7000 -5.8435 39 1 -0.4358 2.9538 -9.3486 40 1 2.2374 3.3853 -3.9875 41 1 0.6448 3.4637 -3.1939 42 1 2.0269 3.1880 1.4220 43 1 2.0086 1.5397 2.2491 44 1 4.0206 0.8283 0.8770 45 1 4.0396 2.4762 0.0493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027562148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:42 Heat of formation + Delta-G solvation = 7.235565 kcal Electronic energy + Delta-G solvation = -23521.942447 eV Core-core repulsion = 20347.733568 eV Total energy + Delta-G solvation = -3174.208879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44382 -37.92033 -36.61667 -35.04126 -32.24708 -32.01622 -31.28374 -28.85955 -26.02586 -25.69470 -24.36027 -23.42697 -22.63220 -21.95791 -21.41762 -19.14648 -18.27731 -16.76205 -16.52510 -15.98994 -15.55356 -15.02551 -14.43794 -14.25735 -14.20344 -13.81696 -13.60121 -13.37006 -13.15084 -12.67346 -12.54451 -12.35925 -12.24950 -11.92641 -11.74379 -11.58268 -11.28022 -11.04289 -10.88950 -10.86307 -10.62322 -10.49064 -10.37719 -10.30850 -10.14573 -10.03917 -9.87218 -9.74292 -9.40946 -8.58787 -8.28376 -6.72812 -5.72752 -3.17791 2.76787 3.16961 3.39437 3.47116 3.49965 3.59345 4.39873 4.50967 4.55951 4.68322 4.80186 5.02330 5.21119 5.23382 5.30007 5.34619 5.42752 5.45032 5.50670 5.54848 5.60996 5.70008 5.76530 5.85210 5.88344 5.88711 5.97904 6.01513 6.04024 6.18864 6.24582 6.27775 6.41550 6.54741 6.70039 6.82622 6.96804 7.03143 7.37522 7.69726 7.70299 7.83315 8.39387 8.45267 9.24433 9.87264 10.36393 11.33105 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.004618 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.083796 B = 6062.373521 C = 6340.507852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 C -0.153 4.153 4 C 0.549 3.451 5 O -0.542 6.542 6 N -0.599 5.599 7 C 0.106 3.894 8 C -0.133 4.133 9 C -0.131 4.131 10 C 0.170 3.830 11 H 0.064 0.936 12 N -0.592 5.592 13 C 0.162 3.838 14 C -0.254 4.254 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.906 5.906 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.097 3.903 23 C -0.146 4.146 24 C -0.164 4.164 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.047 0.953 38 H -0.002 1.002 39 H 0.251 0.749 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.332 -6.717 16.110 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.156 4.156 4 C 0.336 3.664 5 O -0.419 6.419 6 N -0.332 5.332 7 C -0.017 4.017 8 C -0.172 4.172 9 C -0.171 4.171 10 C 0.061 3.939 11 H 0.082 0.918 12 N -0.313 5.313 13 C 0.017 3.983 14 C -0.384 4.384 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.551 5.551 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.218 1.218 22 C -0.027 4.027 23 C -0.183 4.183 24 C -0.201 4.201 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.016 0.984 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.894 -6.150 15.993 19.306 hybrid contribution -0.823 0.116 -0.592 1.020 sum 8.072 -6.035 15.401 18.405 Atomic orbital electron populations 1.21728 0.94873 1.01549 1.02757 1.21147 0.96732 0.91479 1.02588 1.21488 1.01269 0.97394 0.95461 1.19445 0.80270 0.83812 0.82836 1.90682 1.36629 1.30638 1.83920 1.48111 1.43091 1.35814 1.06192 1.21848 0.91316 0.88913 0.99620 1.21952 1.00840 0.97767 0.96639 1.22103 0.99914 0.98802 0.96292 1.20575 0.94978 0.90611 0.87757 0.91814 1.43882 1.07132 1.53268 1.27051 1.20759 0.90048 0.94990 0.92486 1.19262 0.83105 1.43786 0.92220 0.91446 1.24995 0.97370 1.01563 0.95545 1.70081 1.31030 1.53339 1.00635 0.86207 0.84695 0.77584 0.78223 1.20271 1.21591 1.21764 1.22399 0.99184 0.95380 0.85723 1.22993 1.00561 1.01789 0.92947 1.23106 0.89907 1.03688 1.03395 0.92381 0.92387 0.92445 0.90684 0.91157 0.89676 0.91732 0.91796 0.91382 0.92516 0.91497 0.95680 0.93457 0.98397 0.93835 0.91958 0.89378 0.88025 0.88114 0.87947 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.58 37.16 0.36 -1.36 16 2 C -0.08 -0.81 5.51 -26.73 -0.15 -0.96 16 3 C -0.15 -1.78 0.83 -155.66 -0.13 -1.91 16 4 C 0.55 8.82 6.13 -10.99 -0.07 8.75 16 5 O -0.54 -10.94 16.17 5.56 0.09 -10.85 16 6 N -0.60 -9.36 2.97 -172.71 -0.51 -9.87 16 7 C 0.11 1.29 5.79 -3.67 -0.02 1.27 16 8 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 9 C -0.13 -2.30 5.15 -26.69 -0.14 -2.44 16 10 C 0.17 3.50 2.74 -67.81 -0.19 3.31 16 11 H 0.06 1.39 7.87 -51.93 -0.41 0.99 16 12 N -0.59 -14.80 2.81 -173.35 -0.49 -15.29 16 13 C 0.16 3.96 8.07 59.85 0.48 4.44 16 14 C -0.25 -7.06 9.57 -15.06 -0.14 -7.20 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C 0.00 0.10 5.04 -17.43 -0.09 0.01 16 17 N -0.91 -26.41 10.84 55.49 0.60 -25.81 16 18 Si 0.90 22.15 29.58 -169.99 -5.03 17.12 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.10 1.83 5.77 -3.71 -0.02 1.81 16 23 C -0.15 -1.50 9.76 -26.69 -0.26 -1.76 16 24 C -0.16 -1.49 9.35 -26.69 -0.25 -1.74 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.80 7.74 -51.93 -0.40 0.40 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.71 6.16 -51.93 -0.32 0.39 16 29 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.09 0.84 4.30 -51.93 -0.22 0.62 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.65 7.58 -51.93 -0.39 0.26 16 37 H 0.05 1.26 7.11 -51.93 -0.37 0.89 16 38 H 0.00 -0.05 6.34 -51.93 -0.33 -0.38 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.06 1.17 6.48 -51.93 -0.34 0.84 16 41 H 0.09 1.90 7.04 -51.93 -0.37 1.54 16 42 H 0.10 1.20 8.03 -51.93 -0.42 0.78 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -31.51 346.96 -8.62 -40.13 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.74 Total: -0.99 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.78 Total: 0.33 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.40 Total: -50.97 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.51 -8.62 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027562148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.366 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds