Wall clock time and date at job start Tue Mar 31 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47156 * 2 1 4 4 C 1.50693 * 115.55267 * 302.74404 * 3 2 1 5 5 O 1.21276 * 120.00628 * 112.84570 * 4 3 2 6 6 N 1.34783 * 119.99916 * 292.84487 * 4 3 2 7 7 C 1.46997 * 120.61266 * 355.63588 * 6 4 3 8 8 C 1.53196 * 108.73900 * 126.38661 * 7 6 4 9 9 C 1.53034 * 109.33810 * 54.62237 * 8 7 6 10 10 C 1.53040 * 109.53890 * 298.61496 * 9 8 7 11 11 H 1.08997 * 109.49991 * 301.41923 * 10 9 8 12 12 N 1.46497 * 109.50005 * 181.35302 * 10 9 8 13 13 C 1.46507 * 119.99925 * 300.00190 * 12 10 9 14 14 C 1.36934 * 120.00323 * 120.00417 * 12 10 9 15 15 H 1.07994 * 120.00134 * 23.57631 * 14 12 10 16 16 C 1.38817 * 119.99975 * 203.57868 * 14 12 10 17 17 N 1.31621 * 119.99928 * 14.04032 * 16 14 12 18 18 Si 1.86800 * 119.99871 * 194.04277 * 16 14 12 19 19 H 1.48501 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46705 * 119.99890 * 18 16 14 21 21 H 1.48493 * 109.47135 * 239.99812 * 18 16 14 22 22 C 1.46925 * 120.63344 * 175.60996 * 6 4 3 23 23 C 1.53004 * 117.49744 * 88.40924 * 3 2 1 24 24 C 1.53002 * 117.49739 * 157.07098 * 3 2 1 25 25 H 1.09007 * 109.47204 * 306.80972 * 1 2 3 26 26 H 1.09000 * 109.47020 * 66.80365 * 1 2 3 27 27 H 1.08995 * 109.47182 * 186.80993 * 1 2 3 28 28 H 1.08994 * 109.47251 * 240.00021 * 2 1 3 29 29 H 1.09004 * 109.46922 * 119.99847 * 2 1 3 30 30 H 1.09006 * 109.62780 * 6.59480 * 7 6 4 31 31 H 1.08997 * 109.58004 * 246.15020 * 7 6 4 32 32 H 1.09001 * 109.49674 * 294.64907 * 8 7 6 33 33 H 1.08995 * 109.49497 * 174.59246 * 8 7 6 34 34 H 1.08996 * 109.46312 * 58.64150 * 9 8 7 35 35 H 1.09002 * 109.45876 * 178.60333 * 9 8 7 36 36 H 1.08995 * 109.46945 * 90.64721 * 13 12 10 37 37 H 1.08994 * 109.47416 * 210.65172 * 13 12 10 38 38 H 1.09002 * 109.46969 * 330.64966 * 13 12 10 39 39 H 0.96995 * 119.99826 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.58512 * 113.84352 * 22 6 4 41 41 H 1.09000 * 109.70047 * 353.48992 * 22 6 4 42 42 H 1.09000 * 117.49730 * 214.99953 * 23 3 2 43 43 H 1.08995 * 117.49989 * 0.02562 * 23 3 2 44 44 H 1.08996 * 117.49732 * 359.97438 * 24 3 2 45 45 H 1.08997 * 117.49961 * 144.97898 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5634 2.3004 -1.1435 5 8 0.8164 3.2322 -0.9323 6 7 1.9673 2.0323 -2.4011 7 6 2.9464 0.9673 -2.6618 8 6 2.3652 0.0095 -3.7067 9 6 1.9538 0.8034 -4.9486 10 6 0.8732 1.8194 -4.5719 11 1 0.0147 1.2976 -4.1490 12 7 0.4570 2.5567 -5.7674 13 6 1.4363 3.3448 -6.5200 14 6 -0.8473 2.5092 -6.1816 15 1 -1.6299 2.2740 -5.4756 16 6 -1.1637 2.7636 -7.5091 17 7 -0.2146 2.7765 -8.4210 18 14 -2.9363 3.0876 -8.0013 19 1 -3.8046 3.0180 -6.7985 20 1 -3.0421 4.4379 -8.6101 21 1 -3.3714 2.0650 -8.9863 22 6 1.4370 2.7984 -3.5371 23 6 2.2400 2.1211 1.3567 24 6 3.4540 1.6918 0.5287 25 1 -0.3634 0.6158 0.8228 26 1 -0.3633 0.4048 -0.9446 27 1 -0.3633 -1.0204 0.1219 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.1493 0.4227 -1.7396 31 1 3.8699 1.4049 -3.0409 32 1 1.4927 -0.4954 -3.2920 33 1 3.1175 -0.7302 -3.9804 34 1 2.8217 1.3277 -5.3485 35 1 1.5629 0.1206 -5.7031 36 1 1.8850 2.7229 -7.2945 37 1 0.9388 4.1976 -6.9816 38 1 2.2137 3.7000 -5.8435 39 1 -0.4358 2.9538 -9.3486 40 1 2.2374 3.3853 -3.9875 41 1 0.6448 3.4637 -3.1939 42 1 2.0269 3.1880 1.4220 43 1 2.0086 1.5397 2.2491 44 1 4.0206 0.8283 0.8770 45 1 4.0396 2.4762 0.0493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027562148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:41 Heat of formation + Delta-G solvation = -11.411735 kcal Electronic energy + Delta-G solvation = -23522.751054 eV Core-core repulsion = 20347.733568 eV Total energy + Delta-G solvation = -3175.017487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62602 -39.27397 -37.77953 -36.77663 -33.89862 -32.92860 -32.79591 -30.56467 -28.08553 -26.98804 -25.62176 -24.85844 -23.45091 -23.05439 -22.83408 -20.66262 -19.52193 -18.75485 -17.71168 -17.22725 -16.93806 -16.52280 -15.86888 -15.53260 -15.44273 -15.34268 -14.87995 -14.69511 -14.48474 -14.20635 -13.83760 -13.77654 -13.60472 -13.25345 -12.94566 -12.82015 -12.58113 -12.54220 -12.36391 -12.32419 -12.18207 -12.03198 -11.95257 -11.81952 -11.66399 -11.40068 -11.30658 -10.92537 -10.71835 -10.60052 -9.70973 -8.77225 -7.88284 -5.35591 1.41418 1.43557 1.53754 1.56768 1.96082 2.47889 2.76268 3.25501 3.46625 3.59723 3.69162 3.90796 3.93627 4.03552 4.06983 4.13848 4.21564 4.34382 4.40716 4.54322 4.60233 4.64341 4.72432 4.75845 4.77598 4.84658 4.89231 4.97094 5.01236 5.08090 5.09667 5.13606 5.20040 5.24766 5.26124 5.36175 5.42648 5.48431 5.52965 5.61791 5.66226 6.29674 6.47816 7.10844 7.18391 7.82230 8.25740 9.15499 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.004618 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.083796 B = 6062.373521 C = 6340.507852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 C -0.168 4.168 4 C 0.542 3.458 5 O -0.597 6.597 6 N -0.600 5.600 7 C 0.104 3.896 8 C -0.123 4.123 9 C -0.121 4.121 10 C 0.170 3.830 11 H 0.042 0.958 12 N -0.609 5.609 13 C 0.180 3.820 14 C -0.268 4.268 15 H 0.059 0.941 16 C -0.044 4.044 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.286 1.286 22 C 0.112 3.888 23 C -0.151 4.151 24 C -0.135 4.135 25 H 0.049 0.951 26 H 0.019 0.981 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.006 0.994 37 H 0.017 0.983 38 H 0.028 0.972 39 H 0.250 0.750 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.127 0.873 44 H 0.141 0.859 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -8.908 18.203 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.171 4.171 4 C 0.331 3.669 5 O -0.477 6.477 6 N -0.331 5.331 7 C -0.017 4.017 8 C -0.162 4.162 9 C -0.161 4.161 10 C 0.062 3.938 11 H 0.060 0.940 12 N -0.332 5.332 13 C 0.035 3.965 14 C -0.398 4.398 15 H 0.076 0.924 16 C -0.240 4.240 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.198 1.198 20 H -0.215 1.215 21 H -0.213 1.213 22 C -0.013 4.013 23 C -0.188 4.188 24 C -0.172 4.172 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.024 0.976 37 H 0.036 0.964 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.998 -8.380 18.116 22.789 hybrid contribution -1.483 0.827 -1.185 2.070 sum 9.515 -7.553 16.931 20.839 Atomic orbital electron populations 1.21734 0.96696 1.02242 1.00301 1.21198 0.95052 0.90312 1.04727 1.21459 1.04030 0.97623 0.94021 1.20376 0.79161 0.83518 0.83807 1.90650 1.39034 1.33277 1.84784 1.48201 1.43452 1.36221 1.05239 1.22156 0.90597 0.87895 1.01040 1.21910 1.01955 0.97931 0.94359 1.21915 0.98347 0.97781 0.98060 1.20675 0.95425 0.91273 0.86412 0.94013 1.44076 1.06562 1.54371 1.28165 1.20477 0.90112 0.93433 0.92486 1.19466 0.84420 1.43544 0.92349 0.92357 1.25686 1.01055 1.01793 0.95484 1.70211 1.32670 1.54283 1.00653 0.85248 0.80436 0.77223 0.77800 1.19802 1.21518 1.21316 1.21885 0.98138 0.94746 0.86495 1.23083 1.01698 1.00752 0.93317 1.23273 0.88520 1.04497 1.00916 0.93183 0.96190 0.90478 0.89806 0.87528 0.86198 0.90063 0.91897 0.87671 0.92381 0.93922 0.97576 0.96437 0.95365 0.94089 0.91765 0.93066 0.90572 0.85514 0.84086 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.58 71.98 0.69 -2.53 16 2 C -0.08 -1.20 5.51 30.59 0.17 -1.03 16 3 C -0.17 -3.45 0.83 -52.93 -0.04 -3.50 16 4 C 0.54 17.26 6.13 87.65 0.54 17.80 16 5 O -0.60 -25.25 16.17 -3.02 -0.05 -25.30 16 6 N -0.60 -18.26 2.97 -818.72 -2.43 -20.69 16 7 C 0.10 2.17 5.79 86.35 0.50 2.67 16 8 C -0.12 -2.84 6.08 30.67 0.19 -2.66 16 9 C -0.12 -4.19 5.15 30.62 0.16 -4.04 16 10 C 0.17 7.21 2.74 45.07 0.12 7.33 16 11 H 0.04 1.92 7.87 -2.39 -0.02 1.90 16 12 N -0.61 -31.65 2.81 -702.35 -1.97 -33.63 16 13 C 0.18 9.06 8.07 127.77 1.03 10.09 16 14 C -0.27 -15.44 9.57 84.04 0.80 -14.64 16 15 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 16 C -0.04 -2.56 5.04 84.86 0.43 -2.14 16 17 N -0.93 -55.83 10.84 21.65 0.23 -55.59 16 18 Si 0.96 46.66 29.58 68.60 2.03 48.68 16 19 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 C 0.11 4.36 5.77 86.36 0.50 4.86 16 23 C -0.15 -2.72 9.76 30.62 0.30 -2.42 16 24 C -0.14 -1.85 9.35 30.62 0.29 -1.56 16 25 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.02 0.55 7.74 -2.39 -0.02 0.53 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.18 6.16 -2.39 -0.01 1.17 16 29 H 0.11 1.01 8.11 -2.38 -0.02 0.99 16 30 H 0.12 1.74 4.30 -2.38 -0.01 1.73 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.98 7.72 -2.39 -0.02 1.97 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.01 0.32 7.58 -2.39 -0.02 0.30 16 37 H 0.02 0.95 7.11 -2.39 -0.02 0.93 16 38 H 0.03 1.22 6.34 -2.39 -0.02 1.20 16 39 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.06 2.44 6.48 -2.39 -0.02 2.42 16 41 H 0.05 2.36 7.04 -2.39 -0.02 2.34 16 42 H 0.08 1.77 8.03 -2.39 -0.02 1.75 16 43 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.14 0.93 8.14 -2.39 -0.02 0.92 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -74.00 346.96 4.42 -69.58 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.95 Total: 8.69 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.67 Total: 8.25 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.17 Total: -109.91 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -74.00 4.42 -69.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027562148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.169 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds