Wall clock time and date at job start Tue Mar 31 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50692 * 109.47368 * 2 1 4 4 C 1.32988 * 120.00543 * 124.47550 * 3 2 1 5 5 C 1.50702 * 120.00536 * 185.88035 * 4 3 2 6 6 C 1.47110 * 119.99692 * 5.88201 * 4 3 2 7 7 O 1.21614 * 119.99649 * 262.50197 * 6 4 3 8 8 N 1.34777 * 119.99912 * 82.50002 * 6 4 3 9 9 C 1.46965 * 120.65171 * 354.82341 * 8 6 4 10 10 C 1.53194 * 108.88583 * 233.52976 * 9 8 6 11 11 C 1.53039 * 109.31587 * 305.44558 * 10 9 8 12 12 C 1.53038 * 109.53646 * 61.36663 * 11 10 9 13 13 H 1.09006 * 109.50063 * 58.58652 * 12 11 10 14 14 C 1.53000 * 109.52445 * 178.66523 * 12 11 10 15 15 N 1.46504 * 109.47148 * 184.85578 * 14 12 11 16 16 C 1.36936 * 119.99887 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99782 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99913 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47114 * 90.00470 * 20 18 16 22 22 H 1.48502 * 109.47590 * 210.00036 * 20 18 16 23 23 H 1.48495 * 109.47353 * 330.00385 * 20 18 16 24 24 C 1.46921 * 120.63024 * 175.00743 * 8 6 4 25 25 H 1.09002 * 109.46909 * 60.00072 * 1 2 3 26 26 H 1.09000 * 109.47395 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46984 * 300.00270 * 1 2 3 28 28 H 1.09000 * 109.46984 * 239.99730 * 2 1 3 29 29 H 1.09002 * 109.46909 * 119.99928 * 2 1 3 30 30 H 1.08004 * 120.00009 * 304.47468 * 3 2 1 31 31 H 1.09000 * 109.46808 * 265.04596 * 5 4 3 32 32 H 1.08995 * 109.46563 * 25.04675 * 5 4 3 33 33 H 1.09004 * 109.46971 * 145.04813 * 5 4 3 34 34 H 1.09003 * 109.45961 * 113.75095 * 9 8 6 35 35 H 1.08996 * 109.71636 * 353.46660 * 9 8 6 36 36 H 1.09002 * 109.49429 * 185.49044 * 10 9 8 37 37 H 1.09003 * 109.49584 * 65.40202 * 10 9 8 38 38 H 1.08992 * 109.45978 * 301.34736 * 11 10 9 39 39 H 1.09000 * 109.44914 * 181.37924 * 11 10 9 40 40 H 1.08994 * 109.47261 * 304.85351 * 14 12 11 41 41 H 1.09003 * 109.46926 * 64.85770 * 14 12 11 42 42 H 0.96999 * 119.99899 * 359.97438 * 15 14 12 43 43 H 0.96992 * 119.99692 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58831 * 6.60258 * 24 8 6 45 45 H 1.09007 * 109.58417 * 246.32506 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8687 1.8304 0.9494 5 6 3.2670 3.2817 1.0279 6 6 3.4051 0.8668 1.9230 7 8 2.8879 0.7574 3.0183 8 7 4.4694 0.1052 1.6011 9 6 5.0353 0.1432 0.2453 10 6 5.1059 -1.2857 -0.3027 11 6 5.8831 -2.1663 0.6784 12 6 5.1541 -2.2004 2.0235 13 1 4.1443 -2.5853 1.8805 14 6 5.9135 -3.1075 2.9938 15 7 5.1551 -3.2318 4.2411 16 6 5.6423 -3.9996 5.2650 17 1 6.5854 -4.5138 5.1528 18 6 4.9241 -4.1170 6.4470 19 7 3.7749 -3.4899 6.5839 20 14 5.5883 -5.1649 7.8434 21 1 6.4344 -4.3277 8.7314 22 1 4.4559 -5.7258 8.6234 23 1 6.4027 -6.2743 7.2857 24 6 5.0840 -0.7820 2.5980 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7133 2.1063 -0.7711 31 1 4.2078 3.4294 0.4976 32 1 2.4917 3.8964 0.5707 33 1 3.3897 3.5688 2.0723 34 1 6.0374 0.5705 0.2819 35 1 4.4021 0.7514 -0.4006 36 1 5.6131 -1.2806 -1.2675 37 1 4.0966 -1.6791 -0.4240 38 1 6.8840 -1.7583 0.8181 39 1 5.9558 -3.1779 0.2790 40 1 6.0404 -4.0930 2.5461 41 1 6.8917 -2.6754 3.2049 42 1 4.3083 -2.7697 4.3420 43 1 3.2729 -3.5723 7.4097 44 1 4.4808 -0.7848 3.5059 45 1 6.0899 -0.4311 2.8287 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266775310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:08 Heat of formation + Delta-G solvation = -27.501035 kcal Electronic energy + Delta-G solvation = -22924.181257 eV Core-core repulsion = 19748.466086 eV Total energy + Delta-G solvation = -3175.715171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29128 -37.68144 -35.83073 -34.77685 -32.84564 -32.19749 -31.64829 -29.69617 -27.19276 -25.77621 -25.45300 -23.11989 -22.73841 -21.88866 -21.11285 -19.69020 -18.15938 -16.99678 -16.44680 -15.82270 -15.58844 -14.82109 -14.66186 -14.46286 -14.03130 -13.73893 -13.60667 -13.50306 -13.21059 -12.97862 -12.88499 -12.79962 -12.49516 -12.35942 -12.20359 -12.08156 -11.46945 -11.16174 -11.07875 -11.04710 -10.98246 -10.79532 -10.60789 -10.35539 -10.25512 -9.95742 -9.66150 -9.56381 -8.94900 -8.81686 -8.42873 -6.84881 -5.67614 -2.97538 1.66700 2.77867 3.20294 3.48663 3.53026 3.55414 4.45504 4.63125 4.67007 4.80653 4.93351 4.95013 5.04198 5.20161 5.24388 5.25341 5.32673 5.38253 5.41828 5.50190 5.57180 5.65651 5.68275 5.69889 5.82797 5.85437 5.87672 5.98686 6.01944 6.08028 6.13861 6.16561 6.24206 6.26753 6.43580 6.48638 6.59602 6.72274 6.81288 6.91998 7.57186 7.76285 8.35058 8.50050 9.60946 10.19197 10.53450 11.54700 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.004332 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.883524 B = 6461.249771 C = 6938.018284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.119 4.119 4 C -0.158 4.158 5 C -0.104 4.104 6 C 0.553 3.447 7 O -0.528 6.528 8 N -0.606 5.606 9 C 0.108 3.892 10 C -0.133 4.133 11 C -0.112 4.112 12 C -0.106 4.106 13 H 0.073 0.927 14 C 0.161 3.839 15 N -0.733 5.733 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.119 3.881 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.019 0.981 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.103 0.897 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 11.384 -20.131 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.138 4.138 4 C -0.161 4.161 5 C -0.161 4.161 6 C 0.340 3.660 7 O -0.404 6.404 8 N -0.339 5.339 9 C -0.016 4.016 10 C -0.171 4.171 11 C -0.150 4.150 12 C -0.126 4.126 13 H 0.091 0.909 14 C 0.033 3.967 15 N -0.378 5.378 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.003 4.003 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.376 11.215 -19.417 22.426 hybrid contribution 0.116 -0.449 0.790 0.916 sum -0.260 10.766 -18.627 21.516 Atomic orbital electron populations 1.21657 0.94490 1.02067 1.01897 1.20765 0.96764 0.93839 1.02918 1.23320 0.96245 0.97878 0.96371 1.21560 1.01320 0.96471 0.96796 1.20673 1.01651 0.90597 1.03194 1.18502 0.79637 0.80548 0.87276 1.90889 1.58119 1.68123 1.23228 1.48175 1.30881 1.42493 1.12372 1.21708 0.99036 0.97613 0.83195 1.21914 1.01410 0.95123 0.98678 1.21520 0.98884 0.99818 0.94803 1.21673 1.00626 0.95326 0.94937 0.90870 1.20631 0.93899 0.95286 0.86927 1.42421 1.24618 1.58958 1.11790 1.19205 1.03385 1.21731 0.93019 0.91245 1.24756 0.97092 1.00842 0.98204 1.69682 1.14655 1.46742 1.26701 0.86211 0.77607 0.79900 0.82579 1.21748 1.21805 1.20815 1.21731 0.98378 0.88058 0.92092 0.92718 0.92246 0.92359 0.90781 0.90991 0.85942 0.91222 0.91148 0.91130 0.91641 0.89932 0.90964 0.91541 0.91782 0.91559 0.96102 0.96296 0.78068 0.93489 0.87885 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.90 37.16 0.37 -1.08 16 2 C -0.11 -1.16 6.19 -27.89 -0.17 -1.33 16 3 C -0.12 -1.20 8.29 -36.13 -0.30 -1.50 16 4 C -0.16 -1.91 4.18 -102.84 -0.43 -2.34 16 5 C -0.10 -0.98 10.04 36.01 0.36 -0.62 16 6 C 0.55 9.00 5.13 -12.66 -0.06 8.93 16 7 O -0.53 -11.37 16.52 5.27 0.09 -11.28 16 8 N -0.61 -8.85 2.98 -174.13 -0.52 -9.37 16 9 C 0.11 1.13 6.30 -3.69 -0.02 1.10 16 10 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 11 C -0.11 -1.38 5.17 -26.69 -0.14 -1.52 16 12 C -0.11 -1.76 2.38 -90.50 -0.22 -1.98 16 13 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.16 3.29 5.66 -4.04 -0.02 3.27 16 15 N -0.73 -19.29 5.38 -59.91 -0.32 -19.61 16 16 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -29.42 13.06 55.49 0.72 -28.70 16 20 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.12 2.07 5.52 -3.71 -0.02 2.05 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 30 H 0.12 0.91 8.05 -52.48 -0.42 0.49 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.74 5.76 -51.93 -0.30 0.44 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.39 10.88 6.89 -40.82 -0.28 10.60 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.10 2.25 6.19 -51.93 -0.32 1.93 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -34.29 358.67 -8.67 -42.96 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.96 Total: 6.69 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.07 Total: -4.14 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.12 Total: -57.68 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.29 -8.67 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266775310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.463 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds