Wall clock time and date at job start Tue Mar 31 2020 02:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46687 * 2 1 4 4 C 1.52991 * 109.47412 * 240.00224 * 2 1 3 5 5 C 1.50697 * 109.47305 * 119.99814 * 2 1 3 6 6 C 1.32994 * 120.00053 * 0.02562 * 5 2 1 7 7 C 1.47103 * 119.99931 * 180.02562 * 6 5 2 8 8 O 1.21610 * 119.99888 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99916 * 179.97438 * 7 6 5 10 10 C 1.47422 * 125.64546 * 5.00779 * 9 7 6 11 11 C 1.54914 * 104.83290 * 155.91889 * 10 9 7 12 12 C 1.55157 * 101.58048 * 37.00292 * 11 10 9 13 13 C 1.47022 * 125.64911 * 185.05847 * 9 7 6 14 14 H 1.09004 * 109.88281 * 300.43427 * 13 9 7 15 15 C 1.53001 * 109.88045 * 61.59715 * 13 9 7 16 16 N 1.46497 * 109.47122 * 182.36849 * 15 13 9 17 17 C 1.36936 * 120.00056 * 185.07084 * 16 15 13 18 18 H 1.07998 * 120.00220 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99931 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00162 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46766 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47013 * 119.99878 * 21 19 17 24 24 H 1.48498 * 109.47150 * 240.00080 * 21 19 17 25 25 H 1.08997 * 109.47379 * 299.99511 * 1 2 3 26 26 H 1.08992 * 109.47063 * 60.00136 * 1 2 3 27 27 H 1.09002 * 109.46511 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47131 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47463 * 300.00256 * 3 2 1 30 30 H 1.08997 * 109.46812 * 60.00142 * 3 2 1 31 31 H 1.08997 * 109.47498 * 300.00011 * 4 2 1 32 32 H 1.09006 * 109.47353 * 59.99834 * 4 2 1 33 33 H 1.08998 * 109.47891 * 179.97438 * 4 2 1 34 34 H 1.08001 * 119.99889 * 180.02562 * 5 2 1 35 35 H 1.07996 * 119.99916 * 359.97438 * 6 5 2 36 36 H 1.08991 * 110.37273 * 37.08099 * 10 9 7 37 37 H 1.08999 * 110.37019 * 274.75143 * 10 9 7 38 38 H 1.09003 * 111.00202 * 278.93489 * 11 10 9 39 39 H 1.08994 * 111.00959 * 155.08115 * 11 10 9 40 40 H 1.09003 * 110.71482 * 82.86652 * 12 11 10 41 41 H 1.08993 * 110.72170 * 206.13467 * 12 11 10 42 42 H 1.08998 * 109.47073 * 302.36654 * 15 13 9 43 43 H 1.09001 * 109.47203 * 62.36971 * 15 13 9 44 44 H 0.96998 * 119.99685 * 5.07030 * 16 15 13 45 45 H 0.97002 * 120.00480 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0324 -0.7103 1.2304 6 6 1.1682 -1.2162 2.1057 7 6 1.6586 -1.9091 3.3070 8 8 2.8543 -2.0198 3.4997 9 7 0.7828 -2.4213 4.1943 10 6 -0.6825 -2.4511 4.0357 11 6 -1.1547 -3.6232 4.9318 12 6 -0.1875 -3.5016 6.1390 13 6 1.1306 -3.0419 5.4809 14 1 1.7811 -3.9006 5.3146 15 6 1.8317 -2.0204 6.3786 16 7 2.2244 -2.6629 7.6353 17 6 2.7779 -1.9173 8.6417 18 1 2.9254 -0.8557 8.5089 19 6 3.1505 -2.5261 9.8322 20 7 2.9722 -3.8202 9.9936 21 14 3.9062 -1.5092 11.2049 22 1 3.9990 -0.0905 10.7763 23 1 3.0549 -1.6046 12.4179 24 1 5.2649 -2.0240 11.5119 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1299 1.4427 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6768 -1.7488 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 3.0942 -0.8086 1.4015 35 1 0.1064 -1.1176 1.9348 36 1 -0.9479 -2.6385 2.9953 37 1 -1.1202 -1.5129 4.3767 38 1 -1.0272 -4.5793 4.4239 39 1 -2.1894 -3.4838 5.2446 40 1 -0.5463 -2.7543 6.8467 41 1 -0.0581 -4.4668 6.6283 42 1 2.7189 -1.6402 5.8722 43 1 1.1519 -1.1949 6.5895 44 1 2.0923 -3.6164 7.7544 45 1 3.2322 -4.2456 10.8256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270022708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:12 Heat of formation + Delta-G solvation = -18.732641 kcal Electronic energy + Delta-G solvation = -22202.600350 eV Core-core repulsion = 19027.265405 eV Total energy + Delta-G solvation = -3175.334945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01177 -38.23945 -37.07257 -34.45355 -32.08873 -31.25806 -30.99533 -28.64887 -27.65677 -27.52716 -25.11828 -24.30701 -22.47517 -21.91497 -20.46585 -18.96187 -18.14948 -17.40426 -16.76926 -16.27283 -15.19361 -15.13040 -14.54091 -14.43054 -14.23510 -14.00686 -13.63919 -13.24861 -13.22057 -12.75020 -12.66502 -12.57308 -12.42204 -12.34251 -12.03849 -11.98072 -11.43036 -11.32602 -11.22274 -11.09679 -10.93220 -10.87180 -10.80894 -10.49963 -10.37829 -9.97953 -9.73591 -9.54388 -9.47231 -8.79668 -8.34090 -6.84355 -5.70284 -2.98176 1.41425 3.17477 3.47992 3.49669 3.53759 3.56216 4.30986 4.49798 4.64979 4.67285 4.69258 4.74054 4.98198 5.06031 5.12666 5.21162 5.32032 5.33823 5.45072 5.46687 5.49662 5.57214 5.57625 5.62830 5.65841 5.72181 5.84657 5.85751 5.91946 5.98549 6.00237 6.08455 6.13332 6.22162 6.33280 6.38818 6.48693 6.66848 6.88737 7.05712 7.76606 7.79870 8.43650 8.49465 9.59718 10.16809 10.52749 11.52933 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.003590 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.847623 B = 7796.949871 C = 8634.810508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.061 4.061 6 C -0.211 4.211 7 C 0.556 3.444 8 O -0.536 6.536 9 N -0.609 5.609 10 C 0.101 3.899 11 C -0.135 4.135 12 C -0.120 4.120 13 C 0.130 3.870 14 H 0.075 0.925 15 C 0.147 3.853 16 N -0.728 5.728 17 C -0.233 4.233 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.030 0.970 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 5.259 -22.383 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.048 4.048 3 C -0.196 4.196 4 C -0.195 4.195 5 C -0.081 4.081 6 C -0.232 4.232 7 C 0.346 3.654 8 O -0.415 6.415 9 N -0.343 5.343 10 C -0.022 4.022 11 C -0.173 4.173 12 C -0.158 4.158 13 C 0.027 3.973 14 H 0.093 0.907 15 C 0.019 3.981 16 N -0.373 5.373 17 C -0.364 4.364 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.048 0.952 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.925 5.378 -22.241 24.942 hybrid contribution 0.316 0.182 0.943 1.011 sum -9.608 5.560 -21.299 24.018 Atomic orbital electron populations 1.22001 0.94147 1.02133 1.02154 1.19765 0.95930 0.95631 0.93431 1.21833 1.01502 0.94169 1.02116 1.21824 1.01474 1.00302 0.95929 1.23694 1.00466 0.91433 0.92500 1.22791 1.00795 1.03805 0.95807 1.18260 0.85419 0.78785 0.82917 1.90822 1.15360 1.58687 1.76585 1.48415 1.06718 1.59609 1.19552 1.22303 0.80681 0.99160 1.00035 1.22809 0.99770 0.97990 0.96736 1.22652 0.93287 1.03062 0.96769 1.21799 0.96843 0.96398 0.82254 0.90699 1.20929 0.96459 0.93522 0.87180 1.42211 1.74748 1.08560 1.11770 1.19268 1.32106 0.92098 0.92935 0.91235 1.24720 1.02316 0.95881 0.98199 1.69668 1.53997 1.08603 1.26119 0.86103 0.78642 0.79181 0.82230 1.20592 1.21924 1.21874 0.92051 0.92257 0.92161 0.92151 0.92140 0.92238 0.92350 0.92143 0.92173 0.85573 0.85353 0.90979 0.91422 0.90862 0.90010 0.89864 0.89818 0.95248 0.96176 0.78320 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.13 37.16 0.26 -0.75 16 2 C -0.05 -0.38 0.99 -155.66 -0.15 -0.54 16 3 C -0.14 -1.05 8.46 37.16 0.31 -0.73 16 4 C -0.14 -0.99 8.46 37.15 0.31 -0.67 16 5 C -0.06 -0.68 8.33 -36.13 -0.30 -0.99 16 6 C -0.21 -2.58 8.42 -37.81 -0.32 -2.90 16 7 C 0.56 9.34 7.53 -12.66 -0.10 9.24 16 8 O -0.54 -11.39 15.41 5.27 0.08 -11.30 16 9 N -0.61 -9.55 3.07 -164.40 -0.50 -10.05 16 10 C 0.10 1.13 6.43 -2.53 -0.02 1.12 16 11 C -0.14 -1.48 7.09 -24.58 -0.17 -1.65 16 12 C -0.12 -1.82 6.10 -24.90 -0.15 -1.98 16 13 C 0.13 2.39 2.92 -66.95 -0.20 2.19 16 14 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 15 C 0.15 3.36 5.62 -4.04 -0.02 3.34 16 16 N -0.73 -19.57 5.37 -59.91 -0.32 -19.90 16 17 C -0.23 -6.86 9.99 -15.06 -0.15 -7.01 16 18 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 21 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.40 7.50 -51.93 -0.39 0.01 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.13 1.62 7.49 -52.49 -0.39 1.23 16 35 H 0.13 1.22 4.69 -52.49 -0.25 0.98 16 36 H 0.07 0.63 7.36 -51.93 -0.38 0.25 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.37 7.81 -51.93 -0.41 0.96 16 41 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.03 0.75 6.95 -51.93 -0.36 0.39 16 43 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.38 10.59 7.53 -40.82 -0.31 10.28 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -34.36 359.51 -8.32 -42.69 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.91 Total: 5.12 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.78 Total: -1.89 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.10 Total: -58.21 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.36 -8.32 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270022708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.955 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds