Wall clock time and date at job start Tue Mar 31 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46687 * 2 1 4 4 C 1.52991 * 109.47412 * 240.00224 * 2 1 3 5 5 C 1.50697 * 109.47305 * 119.99814 * 2 1 3 6 6 C 1.32994 * 120.00053 * 0.02562 * 5 2 1 7 7 C 1.47103 * 119.99931 * 180.02562 * 6 5 2 8 8 O 1.21610 * 119.99888 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99916 * 179.97438 * 7 6 5 10 10 C 1.47422 * 125.64546 * 5.00779 * 9 7 6 11 11 C 1.54914 * 104.83290 * 155.91889 * 10 9 7 12 12 C 1.55157 * 101.58048 * 37.00292 * 11 10 9 13 13 C 1.47022 * 125.64911 * 185.05847 * 9 7 6 14 14 H 1.09004 * 109.88281 * 300.43427 * 13 9 7 15 15 C 1.53001 * 109.88045 * 61.59715 * 13 9 7 16 16 N 1.46497 * 109.47122 * 182.36849 * 15 13 9 17 17 C 1.36936 * 120.00056 * 185.07084 * 16 15 13 18 18 H 1.07998 * 120.00220 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99931 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00162 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46766 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47013 * 119.99878 * 21 19 17 24 24 H 1.48498 * 109.47150 * 240.00080 * 21 19 17 25 25 H 1.08997 * 109.47379 * 299.99511 * 1 2 3 26 26 H 1.08992 * 109.47063 * 60.00136 * 1 2 3 27 27 H 1.09002 * 109.46511 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47131 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47463 * 300.00256 * 3 2 1 30 30 H 1.08997 * 109.46812 * 60.00142 * 3 2 1 31 31 H 1.08997 * 109.47498 * 300.00011 * 4 2 1 32 32 H 1.09006 * 109.47353 * 59.99834 * 4 2 1 33 33 H 1.08998 * 109.47891 * 179.97438 * 4 2 1 34 34 H 1.08001 * 119.99889 * 180.02562 * 5 2 1 35 35 H 1.07996 * 119.99916 * 359.97438 * 6 5 2 36 36 H 1.08991 * 110.37273 * 37.08099 * 10 9 7 37 37 H 1.08999 * 110.37019 * 274.75143 * 10 9 7 38 38 H 1.09003 * 111.00202 * 278.93489 * 11 10 9 39 39 H 1.08994 * 111.00959 * 155.08115 * 11 10 9 40 40 H 1.09003 * 110.71482 * 82.86652 * 12 11 10 41 41 H 1.08993 * 110.72170 * 206.13467 * 12 11 10 42 42 H 1.08998 * 109.47073 * 302.36654 * 15 13 9 43 43 H 1.09001 * 109.47203 * 62.36971 * 15 13 9 44 44 H 0.96998 * 119.99685 * 5.07030 * 16 15 13 45 45 H 0.97002 * 120.00480 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0324 -0.7103 1.2304 6 6 1.1682 -1.2162 2.1057 7 6 1.6586 -1.9091 3.3070 8 8 2.8543 -2.0198 3.4997 9 7 0.7828 -2.4213 4.1943 10 6 -0.6825 -2.4511 4.0357 11 6 -1.1547 -3.6232 4.9318 12 6 -0.1875 -3.5016 6.1390 13 6 1.1306 -3.0419 5.4809 14 1 1.7811 -3.9006 5.3146 15 6 1.8317 -2.0204 6.3786 16 7 2.2244 -2.6629 7.6353 17 6 2.7779 -1.9173 8.6417 18 1 2.9254 -0.8557 8.5089 19 6 3.1505 -2.5261 9.8322 20 7 2.9722 -3.8202 9.9936 21 14 3.9062 -1.5092 11.2049 22 1 3.9990 -0.0905 10.7763 23 1 3.0549 -1.6046 12.4179 24 1 5.2649 -2.0240 11.5119 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 3.1299 1.4427 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6768 -1.7488 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 3.0942 -0.8086 1.4015 35 1 0.1064 -1.1176 1.9348 36 1 -0.9479 -2.6385 2.9953 37 1 -1.1202 -1.5129 4.3767 38 1 -1.0272 -4.5793 4.4239 39 1 -2.1894 -3.4838 5.2446 40 1 -0.5463 -2.7543 6.8467 41 1 -0.0581 -4.4668 6.6283 42 1 2.7189 -1.6402 5.8722 43 1 1.1519 -1.1949 6.5895 44 1 2.0923 -3.6164 7.7544 45 1 3.2322 -4.2456 10.8256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270022708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:11 Heat of formation + Delta-G solvation = -40.757058 kcal Electronic energy + Delta-G solvation = -22203.555401 eV Core-core repulsion = 19027.265405 eV Total energy + Delta-G solvation = -3176.289995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28488 -39.15961 -38.24150 -36.45210 -33.66310 -32.86792 -32.03251 -30.29930 -28.18880 -28.09641 -26.77570 -25.68563 -24.22794 -23.06214 -21.68445 -20.24198 -19.16048 -19.06904 -18.21312 -17.57116 -16.63308 -16.33852 -15.89061 -15.56356 -15.38112 -15.06556 -15.04893 -14.91433 -14.76725 -14.08242 -13.85133 -13.64154 -13.19241 -13.15672 -13.02629 -12.96156 -12.85029 -12.76709 -12.53155 -12.18653 -12.05376 -11.94645 -11.92934 -11.92224 -11.82896 -11.60893 -11.59662 -11.04832 -10.88433 -10.44080 -9.65590 -9.08621 -8.00634 -5.31162 0.37994 1.43231 1.45492 1.55691 1.95093 2.29286 2.52933 3.31494 3.41456 3.63963 3.72275 3.85910 3.92454 4.06679 4.09251 4.12030 4.24868 4.29335 4.33202 4.44235 4.51272 4.70702 4.77524 4.79759 4.81025 4.90721 4.92187 5.01075 5.01394 5.04696 5.10748 5.12991 5.14695 5.23294 5.27844 5.33577 5.38986 5.41354 5.43284 5.55893 5.57323 6.20691 6.57535 7.15834 7.27150 7.97306 8.25943 9.22864 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.003590 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.847623 B = 7796.949871 C = 8634.810508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.050 4.050 6 C -0.215 4.215 7 C 0.543 3.457 8 O -0.598 6.598 9 N -0.609 5.609 10 C 0.095 3.905 11 C -0.119 4.119 12 C -0.116 4.116 13 C 0.135 3.865 14 H 0.048 0.952 15 C 0.156 3.844 16 N -0.736 5.736 17 C -0.252 4.252 18 H 0.067 0.933 19 C -0.070 4.070 20 N -0.966 5.966 21 Si 0.978 3.022 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.291 1.291 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.165 0.835 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.076 0.924 42 H -0.005 1.005 43 H 0.022 0.978 44 H 0.377 0.623 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.194 6.309 -23.950 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.045 4.045 3 C -0.197 4.197 4 C -0.195 4.195 5 C -0.070 4.070 6 C -0.236 4.236 7 C 0.336 3.664 8 O -0.481 6.481 9 N -0.341 5.341 10 C -0.026 4.026 11 C -0.157 4.157 12 C -0.155 4.155 13 C 0.031 3.969 14 H 0.066 0.934 15 C 0.028 3.972 16 N -0.379 5.379 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.263 4.263 20 N -0.616 5.616 21 Si 0.806 3.194 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.218 1.218 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.182 0.818 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.013 0.987 43 H 0.040 0.960 44 H 0.209 0.791 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.493 6.444 -23.838 27.674 hybrid contribution 1.165 -0.127 1.382 1.812 sum -11.328 6.317 -22.455 25.932 Atomic orbital electron populations 1.22015 0.92479 1.02858 1.03078 1.19836 0.97260 0.95441 0.91925 1.21853 1.01145 0.93873 1.02809 1.21835 1.01126 1.00400 0.96106 1.23922 0.99253 0.90360 0.93502 1.22756 1.02505 1.04312 0.93987 1.19168 0.84825 0.78327 0.84074 1.90786 1.18066 1.61092 1.78137 1.48545 1.08966 1.58647 1.17955 1.22691 0.77342 1.00103 1.02474 1.22828 1.00134 0.98536 0.94157 1.22558 0.92679 1.02006 0.98225 1.21533 0.97869 0.94180 0.83328 0.93417 1.20887 0.95367 0.94712 0.86244 1.42325 1.74713 1.08227 1.12663 1.19592 1.32517 0.92336 0.93945 0.91456 1.25597 1.02917 0.97141 1.00602 1.69818 1.54834 1.10158 1.26763 0.85015 0.77435 0.78015 0.78907 1.19462 1.21072 1.21803 0.91985 0.90563 0.91515 0.92878 0.90081 0.92883 0.92451 0.90161 0.92880 0.88231 0.81798 0.87317 0.89872 0.89783 0.86732 0.91039 0.90556 0.98720 0.95956 0.79113 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.13 71.98 0.51 -0.99 16 2 C -0.04 -0.63 0.99 -52.93 -0.05 -0.68 16 3 C -0.14 -1.86 8.46 71.98 0.61 -1.25 16 4 C -0.14 -1.68 8.46 71.98 0.61 -1.07 16 5 C -0.05 -1.11 8.33 24.52 0.20 -0.90 16 6 C -0.22 -5.02 8.42 23.43 0.20 -4.82 16 7 C 0.54 18.67 7.53 86.57 0.65 19.33 16 8 O -0.60 -27.18 15.41 -4.06 -0.06 -27.25 16 9 N -0.61 -18.97 3.07 -792.29 -2.43 -21.39 16 10 C 0.09 1.82 6.43 86.86 0.56 2.38 16 11 C -0.12 -2.24 7.09 31.99 0.23 -2.01 16 12 C -0.12 -3.52 6.10 31.78 0.19 -3.32 16 13 C 0.14 5.15 2.92 45.34 0.13 5.29 16 14 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 15 C 0.16 7.48 5.62 86.38 0.49 7.97 16 16 N -0.74 -41.33 5.37 -343.46 -1.85 -43.18 16 17 C -0.25 -15.29 9.99 84.03 0.84 -14.45 16 18 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 20 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 21 Si 0.98 48.18 29.55 68.60 2.03 50.21 16 22 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 25 H 0.06 0.65 7.50 -2.39 -0.02 0.63 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.62 7.50 -2.39 -0.02 0.60 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 2.73 7.49 -2.91 -0.02 2.71 16 35 H 0.16 2.56 4.69 -2.91 -0.01 2.55 16 36 H 0.11 1.37 7.36 -2.39 -0.02 1.35 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 2.33 7.81 -2.39 -0.02 2.31 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H -0.01 -0.28 6.95 -2.39 -0.02 -0.30 16 43 H 0.02 1.06 8.08 -2.39 -0.02 1.04 16 44 H 0.38 21.82 7.53 -92.71 -0.70 21.12 16 45 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -78.74 359.51 3.86 -74.87 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.25 Total: 25.73 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.63 Total: 1.69 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -3.99 Total: -125.26 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.25 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -78.74 3.86 -74.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270022708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.118 kcal (2) G-P(sol) polarization free energy of solvation -78.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds