Wall clock time and date at job start Tue Mar 31 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47682 * 2 1 4 4 C 1.53003 * 109.47138 * 120.00060 * 2 1 3 5 5 O 1.42897 * 109.52363 * 300.00152 * 4 2 1 6 6 C 1.53117 * 109.57333 * 60.15741 * 4 2 1 7 7 C 1.53035 * 109.27899 * 177.59071 * 6 4 2 8 8 N 1.46848 * 109.52530 * 300.81783 * 7 6 4 9 9 C 1.46898 * 111.00248 * 185.83722 * 8 7 6 10 10 C 1.52995 * 109.47400 * 160.01363 * 9 8 7 11 11 H 1.09000 * 109.46872 * 55.34338 * 10 9 8 12 12 C 1.47198 * 109.47164 * 295.34965 * 10 9 8 13 13 N 6.98831 * 125.68080 * 169.42644 * 2 1 3 14 14 C 1.53001 * 109.47500 * 175.34554 * 10 9 8 15 15 C 1.50699 * 109.47051 * 184.99681 * 14 10 9 16 16 H 1.08000 * 119.99992 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99765 * 179.97438 * 15 14 10 18 18 N 1.31510 * 119.99864 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00021 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46990 * 60.00122 * 19 17 15 21 21 H 1.48493 * 109.47075 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46879 * 300.00126 * 19 17 15 23 23 C 1.46849 * 111.19661 * 61.74400 * 8 7 6 24 24 C 1.53043 * 109.51982 * 298.26102 * 23 8 7 25 25 H 1.09006 * 109.46686 * 300.00033 * 1 2 3 26 26 H 1.08997 * 109.46779 * 59.99438 * 1 2 3 27 27 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47390 * 239.99862 * 2 1 3 29 29 H 1.08998 * 109.47545 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47025 * 300.00429 * 3 2 1 31 31 H 1.09007 * 109.46619 * 59.99959 * 3 2 1 32 32 H 0.96698 * 113.99780 * 179.87314 * 5 4 2 33 33 H 1.09005 * 109.50560 * 297.53012 * 6 4 2 34 34 H 1.09004 * 109.50584 * 57.64889 * 6 4 2 35 35 H 1.09001 * 109.46289 * 180.80302 * 7 6 4 36 36 H 1.09000 * 109.46193 * 60.83889 * 7 6 4 37 37 H 1.09002 * 109.47391 * 280.01522 * 9 8 7 38 38 H 1.09004 * 109.46866 * 40.01522 * 9 8 7 39 39 H 1.08996 * 109.46938 * 305.00289 * 14 10 9 40 40 H 1.09002 * 109.46575 * 65.00321 * 14 10 9 41 41 H 0.96999 * 120.00078 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46539 * 178.24078 * 23 8 7 43 43 H 1.09007 * 109.46397 * 58.26842 * 23 8 7 44 44 H 1.09000 * 109.49927 * 299.23656 * 24 23 8 45 45 H 1.09004 * 109.50196 * 179.11964 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.5642 -0.0486 2.4168 6 6 1.5341 -2.1665 1.2496 7 6 2.0970 -2.8985 2.4700 8 7 3.5645 -2.8748 2.4228 9 6 4.1392 -3.6862 3.5041 10 6 5.5831 -4.0521 3.1550 11 1 6.1494 -3.1431 2.9522 12 6 5.5961 -4.9145 1.9622 13 7 5.6060 -5.5801 1.0416 14 6 6.2189 -4.7975 4.3303 15 6 7.6752 -5.0499 4.0364 16 1 8.1045 -4.7120 3.1048 17 6 8.4598 -5.7112 4.9574 18 7 7.9371 -6.1221 6.0920 19 14 10.2652 -6.0234 4.5934 20 1 10.9614 -4.7269 4.3942 21 1 10.8821 -6.7469 5.7340 22 1 10.3871 -6.8450 3.3624 23 6 4.0751 -1.4987 2.4693 24 6 3.5711 -0.7248 1.2489 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.8484 -0.4539 3.2474 33 1 0.4449 -2.1708 1.2931 34 1 1.8646 -2.6680 0.3400 35 1 1.7502 -3.9319 2.4655 36 1 1.7547 -2.4047 3.3795 37 1 4.1232 -3.1169 4.4335 38 1 3.5529 -4.5970 3.6259 39 1 6.1296 -4.1946 5.2339 40 1 5.7075 -5.7490 4.4763 41 1 8.4891 -6.5870 6.7401 42 1 5.1649 -1.5152 2.4643 43 1 3.7235 -1.0113 3.3788 44 1 3.9337 -1.2037 0.3393 45 1 3.9374 0.3009 1.2917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473883708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:22 Heat of formation + Delta-G solvation = -47.481661 kcal Electronic energy + Delta-G solvation = -22684.416084 eV Core-core repulsion = 19507.834488 eV Total energy + Delta-G solvation = -3176.581596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.33814 -37.49023 -35.65061 -34.33382 -33.68594 -32.20548 -31.18477 -30.31214 -27.33622 -26.81911 -24.61459 -23.10350 -22.45501 -21.66095 -20.40420 -19.65225 -17.35354 -16.72314 -16.49508 -15.55279 -15.02260 -14.85600 -14.60577 -14.50316 -14.30600 -14.19469 -13.80163 -13.01664 -12.97552 -12.83396 -12.48276 -12.34285 -12.13115 -11.90592 -11.79036 -11.71248 -11.50599 -11.44722 -11.35773 -11.16663 -11.02030 -10.95434 -10.93117 -10.67449 -10.56667 -10.26287 -10.10198 -9.71141 -9.53505 -9.24618 -8.46558 -8.23453 -6.10722 -4.13948 3.30358 3.34707 3.38402 3.72465 3.83202 3.91929 4.09507 4.40359 4.49688 4.50429 4.68989 4.88437 4.95240 5.07301 5.09612 5.18755 5.27381 5.28043 5.32533 5.48683 5.51517 5.54742 5.62695 5.69089 5.71506 5.77013 5.79303 5.81302 5.91965 5.98385 5.99780 6.07589 6.12882 6.20054 6.31451 6.35179 6.49411 7.11892 7.15065 7.40718 7.51416 7.52597 7.84358 8.22099 8.59570 8.90618 9.51574 11.00152 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.003442 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.379327 B = 8131.888895 C = 8177.720815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.145 4.145 4 C 0.139 3.861 5 O -0.557 6.557 6 C -0.142 4.142 7 C 0.053 3.947 8 N -0.542 5.542 9 C 0.062 3.938 10 C 0.013 3.987 11 H 0.099 0.901 12 C 0.258 3.742 13 N -0.482 5.482 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.049 3.951 24 C -0.143 4.143 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.371 0.629 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.086 0.914 43 H 0.034 0.966 44 H 0.079 0.921 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 13.855 -6.767 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.202 4.202 4 C 0.098 3.902 5 O -0.364 6.364 6 C -0.180 4.180 7 C -0.074 4.074 8 N -0.266 5.266 9 C -0.066 4.066 10 C -0.009 4.009 11 H 0.116 0.884 12 C -0.059 4.059 13 N -0.159 5.159 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.079 4.079 24 C -0.181 4.181 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.422 12.940 -8.883 21.316 hybrid contribution 1.158 -0.127 1.425 1.841 sum -13.264 12.813 -7.458 19.893 Atomic orbital electron populations 1.21816 0.94886 1.01718 1.01792 1.21079 0.96366 0.96619 0.95727 1.21818 1.00968 0.95676 1.01784 1.21212 0.92312 0.90623 0.86058 1.86489 1.77200 1.57037 1.15689 1.22308 1.00592 0.95487 0.99633 1.22091 0.87736 1.00982 0.96629 1.61933 1.06166 1.11330 1.47207 1.22238 0.95050 0.97512 0.91832 1.19208 0.95432 0.96442 0.89845 0.88365 1.28847 0.91102 0.92743 0.93213 1.80979 1.10529 1.11388 1.12964 1.19166 0.95421 0.95586 0.90528 1.21102 0.94344 1.37631 1.03415 0.92565 1.24949 0.98664 0.95332 0.94978 1.69923 1.36327 1.38817 1.07996 0.86655 0.84987 0.78571 0.77884 1.20043 1.21189 1.20206 1.22180 1.01258 0.87852 0.96575 1.22314 0.95530 1.00506 0.99716 0.91882 0.93165 0.92686 0.90397 0.92558 0.93168 0.91875 0.78078 0.90700 0.90284 0.90384 0.94952 0.92581 0.90352 0.94515 0.95627 0.92732 0.89612 0.94770 0.90266 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.70 37.16 0.32 -0.91 16 2 C -0.08 -0.72 2.34 -90.62 -0.21 -0.93 16 3 C -0.15 -1.26 8.70 37.16 0.32 -0.94 16 4 C 0.14 1.33 0.47 -90.50 -0.04 1.29 16 5 O -0.56 -5.57 11.60 -35.23 -0.41 -5.98 16 6 C -0.14 -1.41 4.68 -26.65 -0.12 -1.53 16 7 C 0.05 0.57 5.20 -3.83 -0.02 0.55 16 8 N -0.54 -6.82 4.28 -234.66 -1.00 -7.83 16 9 C 0.06 0.89 4.37 -3.83 -0.02 0.87 16 10 C 0.01 0.23 2.27 -93.41 -0.21 0.02 16 11 H 0.10 1.69 6.71 -51.93 -0.35 1.34 16 12 C 0.26 5.36 13.66 -20.76 -0.28 5.08 16 13 N -0.48 -10.92 18.54 42.15 0.78 -10.14 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.95 8.60 -34.44 -0.30 -14.25 16 16 H 0.06 1.48 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C 0.05 0.55 5.06 -3.83 -0.02 0.53 16 24 C -0.14 -1.45 4.68 -26.65 -0.12 -1.58 16 25 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.45 6.50 -51.93 -0.34 0.12 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.48 6.49 -51.93 -0.34 0.14 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 32 H 0.37 3.17 5.86 45.56 0.27 3.44 16 33 H 0.07 0.69 6.58 -51.93 -0.34 0.35 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.87 7.93 -51.93 -0.41 0.45 16 36 H 0.03 0.31 6.84 -51.93 -0.36 -0.05 16 37 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 38 H 0.08 1.13 7.79 -51.93 -0.40 0.73 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.09 1.02 6.65 -51.93 -0.35 0.67 16 43 H 0.03 0.34 6.85 -51.92 -0.36 -0.01 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 0.73 6.57 -51.93 -0.34 0.39 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -29.79 348.21 -7.61 -37.40 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.02 Total: -0.68 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.93 Total: -9.58 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.51 Total: -42.63 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.41 Total: -5.98 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.79 -7.61 -37.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473883708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.081 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds