Wall clock time and date at job start Tue Mar 31 2020 02:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47682 * 2 1 4 4 C 1.53003 * 109.47138 * 120.00060 * 2 1 3 5 5 O 1.42897 * 109.52363 * 300.00152 * 4 2 1 6 6 C 1.53117 * 109.57333 * 60.15741 * 4 2 1 7 7 C 1.53035 * 109.27899 * 177.59071 * 6 4 2 8 8 N 1.46848 * 109.52530 * 300.81783 * 7 6 4 9 9 C 1.46898 * 111.00248 * 185.83722 * 8 7 6 10 10 C 1.52995 * 109.47400 * 160.01363 * 9 8 7 11 11 H 1.09000 * 109.46872 * 55.34338 * 10 9 8 12 12 C 1.47198 * 109.47164 * 295.34965 * 10 9 8 13 13 N 6.98831 * 125.68080 * 169.42644 * 2 1 3 14 14 C 1.53001 * 109.47500 * 175.34554 * 10 9 8 15 15 C 1.50699 * 109.47051 * 184.99681 * 14 10 9 16 16 H 1.08000 * 119.99992 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99765 * 179.97438 * 15 14 10 18 18 N 1.31510 * 119.99864 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00021 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46990 * 60.00122 * 19 17 15 21 21 H 1.48493 * 109.47075 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46879 * 300.00126 * 19 17 15 23 23 C 1.46849 * 111.19661 * 61.74400 * 8 7 6 24 24 C 1.53043 * 109.51982 * 298.26102 * 23 8 7 25 25 H 1.09006 * 109.46686 * 300.00033 * 1 2 3 26 26 H 1.08997 * 109.46779 * 59.99438 * 1 2 3 27 27 H 1.09002 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47390 * 239.99862 * 2 1 3 29 29 H 1.08998 * 109.47545 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47025 * 300.00429 * 3 2 1 31 31 H 1.09007 * 109.46619 * 59.99959 * 3 2 1 32 32 H 0.96698 * 113.99780 * 179.87314 * 5 4 2 33 33 H 1.09005 * 109.50560 * 297.53012 * 6 4 2 34 34 H 1.09004 * 109.50584 * 57.64889 * 6 4 2 35 35 H 1.09001 * 109.46289 * 180.80302 * 7 6 4 36 36 H 1.09000 * 109.46193 * 60.83889 * 7 6 4 37 37 H 1.09002 * 109.47391 * 280.01522 * 9 8 7 38 38 H 1.09004 * 109.46866 * 40.01522 * 9 8 7 39 39 H 1.08996 * 109.46938 * 305.00289 * 14 10 9 40 40 H 1.09002 * 109.46575 * 65.00321 * 14 10 9 41 41 H 0.96999 * 120.00078 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46539 * 178.24078 * 23 8 7 43 43 H 1.09007 * 109.46397 * 58.26842 * 23 8 7 44 44 H 1.09000 * 109.49927 * 299.23656 * 24 23 8 45 45 H 1.09004 * 109.50196 * 179.11964 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.5642 -0.0486 2.4168 6 6 1.5341 -2.1665 1.2496 7 6 2.0970 -2.8985 2.4700 8 7 3.5645 -2.8748 2.4228 9 6 4.1392 -3.6862 3.5041 10 6 5.5831 -4.0521 3.1550 11 1 6.1494 -3.1431 2.9522 12 6 5.5961 -4.9145 1.9622 13 7 5.6060 -5.5801 1.0416 14 6 6.2189 -4.7975 4.3303 15 6 7.6752 -5.0499 4.0364 16 1 8.1045 -4.7120 3.1048 17 6 8.4598 -5.7112 4.9574 18 7 7.9371 -6.1221 6.0920 19 14 10.2652 -6.0234 4.5934 20 1 10.9614 -4.7269 4.3942 21 1 10.8821 -6.7469 5.7340 22 1 10.3871 -6.8450 3.3624 23 6 4.0751 -1.4987 2.4693 24 6 3.5711 -0.7248 1.2489 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.8484 -0.4539 3.2474 33 1 0.4449 -2.1708 1.2931 34 1 1.8646 -2.6680 0.3400 35 1 1.7502 -3.9319 2.4655 36 1 1.7547 -2.4047 3.3795 37 1 4.1232 -3.1169 4.4335 38 1 3.5529 -4.5970 3.6259 39 1 6.1296 -4.1946 5.2339 40 1 5.7075 -5.7490 4.4763 41 1 8.4891 -6.5870 6.7401 42 1 5.1649 -1.5152 2.4643 43 1 3.7235 -1.0113 3.3788 44 1 3.9337 -1.2037 0.3393 45 1 3.9374 0.3009 1.2917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473883708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:20 Heat of formation + Delta-G solvation = -65.980190 kcal Electronic energy + Delta-G solvation = -22685.218240 eV Core-core repulsion = 19507.834488 eV Total energy + Delta-G solvation = -3177.383752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17564 -38.73368 -37.00345 -35.50477 -35.05814 -33.81404 -32.01224 -31.49655 -28.41885 -28.01566 -25.82584 -24.01764 -23.82449 -23.17626 -21.19239 -20.43917 -18.56000 -18.15651 -18.11530 -16.76277 -16.39427 -15.84928 -15.66191 -15.43568 -15.37501 -15.04825 -14.95093 -14.50962 -14.23016 -13.88584 -13.74765 -13.73530 -13.35219 -13.06597 -13.00288 -12.83355 -12.77548 -12.57629 -12.52453 -12.36354 -12.29783 -12.23787 -12.17976 -11.81843 -11.65579 -11.62428 -11.36792 -11.21454 -10.83061 -10.54899 -10.49250 -9.19004 -8.19316 -6.27461 1.40946 1.42805 1.49677 2.08128 2.15831 2.41526 2.90369 3.16193 3.36796 3.38035 3.72941 3.73875 3.88826 4.07971 4.25377 4.29539 4.31639 4.43069 4.46157 4.53087 4.55268 4.66338 4.74489 4.80989 4.85582 4.90771 4.97283 5.00609 5.02488 5.07527 5.10217 5.11089 5.22365 5.31318 5.34897 5.46949 5.50395 5.61390 5.62471 5.79413 6.07766 6.22756 6.23750 6.83625 6.84089 6.94883 7.41072 8.91330 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.003442 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.379327 B = 8131.888895 C = 8177.720815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.142 4.142 4 C 0.143 3.857 5 O -0.562 6.562 6 C -0.137 4.137 7 C 0.054 3.946 8 N -0.554 5.554 9 C 0.073 3.927 10 C 0.023 3.977 11 H 0.113 0.887 12 C 0.268 3.732 13 N -0.517 5.517 14 C 0.039 3.961 15 C -0.540 4.540 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.047 3.953 24 C -0.138 4.138 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.377 0.623 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.001 0.999 41 H 0.264 0.736 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.740 15.182 -6.968 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.199 4.199 4 C 0.102 3.898 5 O -0.370 6.370 6 C -0.175 4.175 7 C -0.074 4.074 8 N -0.279 5.279 9 C -0.056 4.056 10 C 0.001 3.999 11 H 0.131 0.869 12 C -0.048 4.048 13 N -0.195 5.195 14 C 0.000 4.000 15 C -0.578 4.578 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.772 3.228 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.080 4.080 24 C -0.176 4.176 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.227 0.773 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.820 14.282 -9.088 22.499 hybrid contribution 1.257 -0.529 1.475 2.009 sum -13.563 13.752 -7.613 20.762 Atomic orbital electron populations 1.21779 0.94457 1.01836 1.01784 1.21119 0.96742 0.96770 0.95467 1.21783 1.00958 0.95404 1.01775 1.21158 0.91814 0.90441 0.86340 1.86493 1.77254 1.57224 1.16057 1.22257 1.01055 0.95444 0.98700 1.22121 0.86402 1.01094 0.97757 1.61839 1.07414 1.12083 1.46569 1.22044 0.92358 0.98162 0.93048 1.19169 0.98129 0.95650 0.86915 0.86888 1.29358 0.89964 0.92239 0.93235 1.80976 1.11913 1.12359 1.14222 1.18983 0.93781 0.94927 0.92322 1.21526 0.96232 1.37031 1.03031 0.92913 1.25694 1.02491 0.95460 0.95005 1.70016 1.37658 1.39781 1.08820 0.85776 0.80797 0.78790 0.77392 1.18719 1.20712 1.20751 1.22225 1.00810 0.87241 0.97728 1.22265 0.95974 1.00562 0.98753 0.92746 0.92302 0.92500 0.90288 0.92524 0.92294 0.92752 0.77335 0.89788 0.91458 0.90917 0.93240 0.90769 0.90654 0.94614 0.98098 0.92696 0.90441 0.93139 0.91420 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.70 71.98 0.63 -1.54 16 2 C -0.08 -1.35 2.34 -10.79 -0.03 -1.37 16 3 C -0.14 -2.22 8.70 71.98 0.63 -1.60 16 4 C 0.14 2.48 0.47 -10.71 -0.01 2.48 16 5 O -0.56 -9.96 11.60 -148.98 -1.73 -11.69 16 6 C -0.14 -2.47 4.68 30.65 0.14 -2.33 16 7 C 0.05 1.05 5.20 86.32 0.45 1.49 16 8 N -0.55 -13.01 4.28 -896.34 -3.83 -16.84 16 9 C 0.07 1.96 4.37 86.30 0.38 2.34 16 10 C 0.02 0.82 2.27 -12.60 -0.03 0.80 16 11 H 0.11 3.71 6.71 -2.39 -0.02 3.69 16 12 C 0.27 11.04 13.66 89.44 1.22 12.26 16 13 N -0.52 -23.40 18.54 20.01 0.37 -23.03 16 14 C 0.04 1.76 4.42 29.85 0.13 1.89 16 15 C -0.54 -28.49 8.60 25.60 0.22 -28.27 16 16 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 17 C 0.01 0.68 5.46 84.66 0.46 1.15 16 18 N -0.92 -52.71 13.29 21.45 0.28 -52.42 16 19 Si 0.95 43.27 29.54 68.60 2.03 45.29 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 C 0.05 0.96 5.06 86.33 0.44 1.39 16 24 C -0.14 -2.57 4.68 30.65 0.14 -2.42 16 25 H 0.05 0.93 7.68 -2.38 -0.02 0.91 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.84 6.50 -2.39 -0.02 0.82 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 0.87 6.49 -2.39 -0.02 0.85 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.95 7.68 -2.38 -0.02 0.93 16 32 H 0.38 5.43 5.86 -74.06 -0.43 4.99 16 33 H 0.08 1.38 6.58 -2.38 -0.02 1.36 16 34 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.50 7.93 -2.39 -0.02 1.49 16 36 H 0.05 0.81 6.84 -2.39 -0.02 0.79 16 37 H 0.07 1.76 8.00 -2.39 -0.02 1.74 16 38 H 0.07 2.09 7.79 -2.38 -0.02 2.07 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 42 H 0.08 1.70 6.65 -2.39 -0.02 1.68 16 43 H 0.05 0.87 6.85 -2.38 -0.02 0.85 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.45 6.57 -2.38 -0.02 1.43 16 Total: -1.00 -62.55 348.21 2.44 -60.11 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.54 Total: 12.31 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.78 Total: -13.73 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -3.18 Total: -92.29 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.73 Total: -11.69 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.55 2.44 -60.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473883708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.867 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds