Wall clock time and date at job start Tue Mar 31 2020 02:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50692 * 120.00426 * 2 1 4 4 C 1.53005 * 109.47418 * 119.99775 * 3 2 1 5 5 C 1.53001 * 109.47261 * 239.99814 * 3 2 1 6 6 C 1.53004 * 109.47055 * 300.00051 * 5 3 2 7 7 C 1.50701 * 109.47050 * 359.97438 * 3 2 1 8 8 O 1.21286 * 119.99913 * 240.00101 * 7 3 2 9 9 N 1.34774 * 120.00060 * 60.00213 * 7 3 2 10 10 C 1.46504 * 120.00174 * 180.02562 * 9 7 3 11 11 C 1.52998 * 109.47198 * 177.31037 * 10 9 7 12 12 N 1.46501 * 112.84870 * 292.02529 * 11 10 9 13 13 C 1.36933 * 120.00351 * 294.81928 * 12 11 10 14 14 H 1.08006 * 119.99437 * 353.55218 * 13 12 11 15 15 C 1.38808 * 120.00444 * 173.55983 * 13 12 11 16 16 N 1.31612 * 120.00450 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99740 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47235 * 89.99965 * 17 15 13 19 19 H 1.48499 * 109.47110 * 210.00288 * 17 15 13 20 20 H 1.48501 * 109.47343 * 330.00265 * 17 15 13 21 21 C 1.53780 * 113.61407 * 160.72307 * 11 10 9 22 22 C 1.53785 * 87.08179 * 220.01811 * 21 11 10 23 23 C 1.53778 * 113.61579 * 63.22552 * 11 10 9 24 24 H 1.08000 * 119.99225 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00094 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99459 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46757 * 300.00289 * 4 3 2 28 28 H 1.08997 * 109.47271 * 180.02562 * 4 3 2 29 29 H 1.08992 * 109.47118 * 59.99787 * 4 3 2 30 30 H 1.09000 * 109.46993 * 59.99663 * 5 3 2 31 31 H 1.08997 * 109.47292 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.46903 * 299.99667 * 6 5 3 33 33 H 1.08997 * 109.47243 * 59.99758 * 6 5 3 34 34 H 1.08992 * 109.46812 * 180.02562 * 6 5 3 35 35 H 0.96997 * 119.99906 * 359.97438 * 9 7 3 36 36 H 1.08998 * 109.46889 * 297.30938 * 10 9 7 37 37 H 1.08998 * 109.47036 * 57.30324 * 10 9 7 38 38 H 0.97005 * 119.99663 * 114.81187 * 12 11 10 39 39 H 0.97003 * 119.99919 * 180.02562 * 16 15 13 40 40 H 1.09007 * 113.61467 * 334.56559 * 21 11 10 41 41 H 1.09001 * 113.61615 * 105.46617 * 21 11 10 42 42 H 1.08996 * 113.61164 * 270.88509 * 22 21 11 43 43 H 1.08995 * 113.61420 * 139.97797 * 22 21 11 44 44 H 1.09004 * 113.61302 * 254.52874 * 23 11 10 45 45 H 1.08999 * 113.61633 * 25.42803 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 1.2493 5 6 2.9433 1.3860 -1.2492 6 6 3.9375 0.2229 -1.2492 7 6 1.0844 2.4505 -0.0006 8 8 1.0899 3.2525 -0.9105 9 7 0.2025 2.5838 1.0098 10 6 -0.7498 3.6970 1.0089 11 6 -1.6737 3.5788 2.2227 12 7 -2.5764 2.4279 2.1405 13 6 -3.5344 2.3775 1.1634 14 1 -3.6940 3.2296 0.5192 15 6 -4.3005 1.2314 1.0008 16 7 -5.2215 1.1831 0.0620 17 14 -4.0240 -0.2425 2.1147 18 1 -4.8960 -0.1291 3.3113 19 1 -4.3543 -1.4887 1.3778 20 1 -2.6019 -0.2814 2.5405 21 6 -2.3813 4.8942 2.5887 22 6 -2.1327 4.5267 4.0611 23 6 -0.9393 3.6908 3.5692 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 2.3165 1.3283 2.1393 28 1 3.4879 2.3302 1.2495 29 1 3.6514 0.5576 1.2494 30 1 2.3166 1.3282 -2.1392 31 1 3.4880 2.3301 -1.2495 32 1 4.5641 0.2807 -0.3592 33 1 3.3924 -0.7210 -1.2492 34 1 4.5644 0.2809 -2.1388 35 1 0.1979 1.9422 1.7373 36 1 -0.2059 4.6404 1.0568 37 1 -1.3439 3.6662 0.0956 38 1 -2.4955 1.7015 2.7783 39 1 -5.7571 0.3822 -0.0513 40 1 -1.8430 5.7846 2.2639 41 1 -3.4364 4.9131 2.3155 42 1 -2.9308 3.9304 4.5031 43 1 -1.8449 5.3762 4.6805 44 1 -0.8302 2.7382 4.0876 45 1 -0.0067 4.2522 3.5125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570116607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:14 Heat of formation + Delta-G solvation = -7.562386 kcal Electronic energy + Delta-G solvation = -23566.860126 eV Core-core repulsion = 20392.009560 eV Total energy + Delta-G solvation = -3174.850566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60750 -40.22835 -37.47575 -35.52367 -35.25169 -32.93677 -32.54096 -30.49843 -28.70470 -26.71295 -26.21660 -25.44478 -23.34156 -22.74176 -22.07047 -20.17638 -19.80078 -19.37711 -17.65302 -17.24558 -16.96641 -16.49848 -16.22068 -15.86914 -15.33894 -15.20381 -14.96748 -14.72272 -14.53639 -14.44416 -13.90466 -13.52235 -13.19438 -13.12108 -13.06393 -12.99875 -12.87317 -12.59931 -12.52320 -12.49590 -12.21318 -11.79785 -11.76074 -11.63780 -11.57416 -11.37651 -11.00804 -10.88690 -10.61814 -10.37069 -9.90065 -9.29011 -7.99100 -5.33600 1.27848 1.36873 1.40671 1.48184 1.65884 2.27814 2.49836 3.30339 3.44089 3.59717 3.70682 3.74910 3.93868 3.98371 4.04253 4.11190 4.18462 4.37619 4.49103 4.59749 4.64469 4.71799 4.75263 4.84350 4.87776 4.89907 4.98824 5.02948 5.06947 5.11757 5.11801 5.20387 5.29286 5.33908 5.38678 5.49976 5.54349 5.62999 5.65177 5.73029 5.85066 6.24143 6.60869 7.11142 7.28484 7.84760 8.04538 9.22753 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.006626 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.080783 B = 4224.679952 C = 5195.562801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.132 4.132 3 C -0.048 4.048 4 C -0.134 4.134 5 C -0.094 4.094 6 C -0.147 4.147 7 C 0.513 3.487 8 O -0.591 6.591 9 N -0.698 5.698 10 C 0.128 3.872 11 C 0.161 3.839 12 N -0.720 5.720 13 C -0.211 4.211 14 H 0.047 0.953 15 C -0.062 4.062 16 N -0.987 5.987 17 Si 0.949 3.051 18 H -0.282 1.282 19 H -0.305 1.305 20 H -0.238 1.238 21 C -0.153 4.153 22 C -0.119 4.119 23 C -0.125 4.125 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.152 0.848 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.408 0.592 36 H 0.070 0.930 37 H 0.022 0.978 38 H 0.369 0.631 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.011 -1.193 8.594 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.150 4.150 3 C -0.051 4.051 4 C -0.191 4.191 5 C -0.132 4.132 6 C -0.204 4.204 7 C 0.301 3.699 8 O -0.472 6.472 9 N -0.348 5.348 10 C 0.002 3.998 11 C 0.070 3.930 12 N -0.363 5.363 13 C -0.342 4.342 14 H 0.065 0.935 15 C -0.253 4.253 16 N -0.638 5.638 17 Si 0.776 3.224 18 H -0.209 1.209 19 H -0.232 1.232 20 H -0.162 1.162 21 C -0.193 4.193 22 C -0.157 4.157 23 C -0.162 4.162 24 H 0.104 0.896 25 H 0.118 0.882 26 H 0.169 0.831 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.244 0.756 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.203 0.797 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.887 -0.555 7.796 21.367 hybrid contribution -1.284 -1.023 -0.025 1.642 sum 18.603 -1.578 7.771 20.223 Atomic orbital electron populations 1.24370 0.97190 1.02712 1.01058 1.22877 0.94562 0.97715 0.99833 1.20064 0.94573 0.90227 1.00194 1.21894 0.99332 1.04082 0.93757 1.21294 0.96939 1.00346 0.94656 1.21865 0.98389 0.97060 1.03075 1.21161 0.81492 0.86366 0.80923 1.90642 1.72914 1.46400 1.37254 1.45905 1.34010 1.29851 1.25056 1.21625 0.90081 0.88943 0.99193 1.21080 0.90185 0.88883 0.92854 1.42239 1.37338 1.21362 1.35336 1.18726 1.08926 0.98386 1.08165 0.93472 1.25446 0.98870 1.00830 1.00163 1.69901 1.27019 1.29620 1.37231 0.85503 0.79575 0.79063 0.78245 1.20898 1.23218 1.16223 1.23332 1.00279 0.97597 0.98045 1.22595 0.97854 1.00083 0.95152 1.23145 0.98180 1.01281 0.93633 0.89622 0.88178 0.83054 0.91435 0.91653 0.88323 0.94118 0.91880 0.90346 0.91847 0.91978 0.75606 0.91238 0.95958 0.79699 0.93691 0.89006 0.93961 0.91402 0.89389 0.90454 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.92 13.17 67.78 0.89 -6.03 16 2 C -0.13 -3.21 7.99 25.64 0.20 -3.01 16 3 C -0.05 -1.16 0.62 -53.67 -0.03 -1.20 16 4 C -0.13 -2.22 8.00 71.98 0.58 -1.64 16 5 C -0.09 -2.24 4.27 30.60 0.13 -2.11 16 6 C -0.15 -2.29 9.30 71.98 0.67 -1.62 16 7 C 0.51 17.36 5.34 87.66 0.47 17.83 16 8 O -0.59 -25.18 15.98 -3.05 -0.05 -25.23 16 9 N -0.70 -22.46 3.60 -463.05 -1.67 -24.13 16 10 C 0.13 4.67 5.08 86.38 0.44 5.11 16 11 C 0.16 5.51 0.82 4.13 0.00 5.51 16 12 N -0.72 -30.62 4.98 -300.97 -1.50 -32.12 16 13 C -0.21 -11.58 9.53 84.03 0.80 -10.78 16 14 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 15 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 16 N -0.99 -63.61 13.97 21.65 0.30 -63.30 16 17 Si 0.95 44.02 27.67 68.60 1.90 45.91 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 20 H -0.24 -9.50 6.62 99.48 0.66 -8.84 16 21 C -0.15 -4.95 7.28 31.12 0.23 -4.72 16 22 C -0.12 -3.08 7.99 31.12 0.25 -2.83 16 23 C -0.12 -3.02 7.00 31.12 0.22 -2.81 16 24 H 0.09 3.42 5.18 -2.91 -0.02 3.41 16 25 H 0.10 3.13 8.06 -2.91 -0.02 3.10 16 26 H 0.15 2.68 7.00 -2.91 -0.02 2.65 16 27 H 0.07 1.05 7.57 -2.38 -0.02 1.03 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.12 6.43 -2.39 -0.02 1.11 16 30 H 0.04 1.18 8.10 -2.39 -0.02 1.16 16 31 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.08 0.91 6.43 -2.39 -0.02 0.89 16 33 H 0.06 0.92 6.62 -2.39 -0.02 0.91 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.41 11.54 7.01 -92.71 -0.65 10.89 16 36 H 0.07 2.32 8.01 -2.39 -0.02 2.30 16 37 H 0.02 1.04 7.80 -2.39 -0.02 1.02 16 38 H 0.37 14.82 5.80 -92.70 -0.54 14.29 16 39 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.09 2.58 8.01 -2.38 -0.02 2.56 16 41 H 0.04 1.67 7.87 -2.39 -0.02 1.65 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 1.72 8.09 -2.38 -0.02 1.70 16 45 H 0.11 2.13 8.10 -2.39 -0.02 2.11 16 Total: -1.00 -73.55 352.05 4.03 -69.52 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -0.26 Total: 40.77 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 5.31 Total: -11.43 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -2.86 Total: -119.55 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.05 Total: -25.23 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.91 kcal Total: -73.55 4.03 -69.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570116607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.958 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds