Wall clock time and date at job start Tue Mar 31 2020 02:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32990 * 119.99915 * 2 1 4 4 C 1.47104 * 120.00261 * 6.70395 * 3 2 1 5 5 O 1.21618 * 119.99487 * 6.94219 * 4 3 2 6 6 N 1.34772 * 120.00325 * 186.94503 * 4 3 2 7 7 C 1.46967 * 120.59536 * 354.95483 * 6 4 3 8 8 C 1.53813 * 108.39738 * 124.75970 * 7 6 4 9 9 N 1.46968 * 108.57726 * 49.64303 * 8 7 6 10 10 C 1.36933 * 120.59535 * 124.67033 * 9 8 7 11 11 H 1.07999 * 119.99899 * 334.23846 * 10 9 8 12 12 C 1.38812 * 119.99934 * 154.23912 * 10 9 8 13 13 N 1.31623 * 119.99743 * 169.62249 * 12 10 9 14 14 Si 1.86798 * 120.00300 * 349.62434 * 12 10 9 15 15 H 1.48497 * 109.46837 * 95.48283 * 14 12 10 16 16 H 1.48494 * 109.47079 * 215.48280 * 14 12 10 17 17 H 1.48502 * 109.46754 * 335.48514 * 14 12 10 18 18 C 1.46970 * 118.81030 * 304.64557 * 9 8 7 19 19 C 1.46968 * 120.59517 * 175.24195 * 6 4 3 20 20 C 1.50700 * 120.00254 * 180.02562 * 2 1 3 21 21 C 1.52998 * 109.47197 * 179.97438 * 20 2 1 22 22 C 1.53000 * 109.46982 * 299.99641 * 20 2 1 23 23 C 1.52997 * 109.47087 * 59.99400 * 20 2 1 24 24 H 1.08997 * 109.47579 * 67.13472 * 1 2 3 25 25 H 1.09005 * 109.46895 * 187.13857 * 1 2 3 26 26 H 1.09000 * 109.47248 * 307.13375 * 1 2 3 27 27 H 1.08008 * 120.00159 * 186.69815 * 3 2 1 28 28 H 1.08996 * 109.61134 * 244.55075 * 7 6 4 29 29 H 1.09006 * 109.60379 * 5.05810 * 7 6 4 30 30 H 1.09000 * 109.74425 * 289.85198 * 8 7 6 31 31 H 1.08994 * 109.53037 * 169.30385 * 8 7 6 32 32 H 0.96996 * 119.99942 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.60938 * 295.48210 * 18 9 8 34 34 H 1.08998 * 109.60616 * 174.97192 * 18 9 8 35 35 H 1.08996 * 109.60729 * 354.94552 * 19 6 4 36 36 H 1.09000 * 109.61139 * 115.45412 * 19 6 4 37 37 H 1.08996 * 109.47140 * 60.00123 * 21 20 2 38 38 H 1.09003 * 109.47065 * 180.02562 * 21 20 2 39 39 H 1.08996 * 109.46968 * 299.99638 * 21 20 2 40 40 H 1.09005 * 109.47019 * 59.99734 * 22 20 2 41 41 H 1.09004 * 109.47471 * 179.97438 * 22 20 2 42 42 H 1.08996 * 109.47352 * 299.99875 * 22 20 2 43 43 H 1.08996 * 109.47248 * 60.00259 * 23 20 2 44 44 H 1.09003 * 109.47235 * 180.02562 * 23 20 2 45 45 H 1.08996 * 109.47456 * 299.99909 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4439 2.4214 0.1487 5 8 0.2535 2.4141 0.3977 6 7 2.0961 3.5925 0.0091 7 6 3.5530 3.6192 -0.1821 8 6 3.8595 4.4036 -1.4691 9 7 3.1273 5.6772 -1.4267 10 6 3.7900 6.8671 -1.5686 11 1 4.8340 6.9389 -1.3019 12 6 3.1197 7.9811 -2.0552 13 7 3.6886 9.1668 -2.0016 14 14 1.4105 7.7974 -2.7861 15 1 0.3929 8.0924 -1.7456 16 1 1.2513 8.7461 -3.9173 17 1 1.2287 6.4074 -3.2764 18 6 1.6711 5.6508 -1.2299 19 6 1.3639 4.8661 0.0514 20 6 2.2605 -1.3051 -0.0006 21 6 3.7647 -1.0254 -0.0011 22 6 1.8910 -2.1079 1.2484 23 6 1.8908 -2.1069 -1.2501 24 1 -0.3634 0.3993 -0.9469 25 1 -0.3633 -1.0198 0.1277 26 1 -0.3634 0.6204 0.8193 27 1 3.2464 1.1550 -0.1091 28 1 4.0248 4.1093 0.6695 29 1 3.9285 2.6000 -0.2748 30 1 3.5400 3.8267 -2.3369 31 1 4.9300 4.5990 -1.5306 32 1 3.2201 9.9453 -2.3412 33 1 1.1958 5.1626 -2.0807 34 1 1.2965 6.6699 -1.1335 35 1 0.2934 4.6707 0.1130 36 1 1.6835 5.4431 0.9193 37 1 4.0284 -0.4541 0.8889 38 1 4.3097 -1.9694 -0.0020 39 1 4.0276 -0.4537 -0.8911 40 1 0.8193 -2.3070 1.2483 41 1 2.4356 -3.0521 1.2478 42 1 2.1543 -1.5367 2.1385 43 1 2.1540 -1.5350 -2.1398 44 1 2.4355 -3.0510 -1.2503 45 1 0.8192 -2.3061 -1.2501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073099799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:15 Heat of formation + Delta-G solvation = 16.646510 kcal Electronic energy + Delta-G solvation = -23063.855564 eV Core-core repulsion = 19890.054774 eV Total energy + Delta-G solvation = -3173.800790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03415 -38.34861 -36.98659 -34.03967 -32.40525 -31.46393 -30.81809 -28.97796 -27.50394 -27.39018 -26.07910 -23.80979 -23.64579 -22.22914 -20.78977 -18.92054 -17.47793 -17.31569 -16.47409 -15.59729 -15.36196 -15.02074 -14.72055 -14.42040 -14.36639 -14.24053 -13.85582 -13.49919 -13.20494 -12.75504 -12.54240 -12.48261 -12.43860 -12.23080 -12.18690 -11.94436 -11.91742 -11.71895 -11.23597 -11.22380 -11.14792 -10.95474 -10.66408 -10.41509 -10.08409 -9.89981 -9.41572 -9.27089 -9.07793 -8.84595 -8.24759 -7.00129 -5.96035 -3.38202 1.47018 3.27335 3.34997 3.43153 3.48524 3.53722 4.35277 4.46539 4.52025 4.71904 4.79380 4.95358 5.02178 5.16529 5.31292 5.35731 5.37008 5.50107 5.52343 5.54755 5.56179 5.60709 5.63684 5.72462 5.82850 5.84448 5.85674 5.88774 5.99509 6.00559 6.05105 6.05739 6.15120 6.21620 6.33000 6.48501 6.56835 6.58646 6.68625 6.94591 7.82513 7.86111 8.27260 8.53021 8.84442 9.65134 9.99639 11.19701 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.004211 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.482104 B = 6648.421180 C = 7015.776833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.026 4.026 3 C -0.231 4.231 4 C 0.543 3.457 5 O -0.556 6.556 6 N -0.596 5.596 7 C 0.086 3.914 8 C 0.137 3.863 9 N -0.608 5.608 10 C -0.262 4.262 11 H 0.090 0.910 12 C 0.019 3.981 13 N -0.916 5.916 14 Si 0.891 3.109 15 H -0.290 1.290 16 H -0.306 1.306 17 H -0.263 1.263 18 C 0.114 3.886 19 C 0.095 3.905 20 C -0.040 4.040 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.139 4.139 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.099 0.901 27 H 0.134 0.866 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.263 0.737 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -22.336 4.391 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.028 4.028 3 C -0.252 4.252 4 C 0.334 3.666 5 O -0.438 6.438 6 N -0.328 5.328 7 C -0.038 4.038 8 C 0.010 3.990 9 N -0.332 5.332 10 C -0.390 4.390 11 H 0.108 0.892 12 C -0.180 4.180 13 N -0.560 5.560 14 Si 0.724 3.276 15 H -0.218 1.218 16 H -0.235 1.235 17 H -0.188 1.188 18 C -0.012 4.012 19 C -0.029 4.029 20 C -0.040 4.040 21 C -0.205 4.205 22 C -0.195 4.195 23 C -0.196 4.196 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.151 0.849 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.426 -22.113 4.461 22.689 hybrid contribution -0.745 0.269 -0.426 0.900 sum -3.172 -21.844 4.035 22.439 Atomic orbital electron populations 1.21143 0.91107 1.01269 1.04504 1.22407 0.96447 0.93337 0.90636 1.22672 1.00823 0.91962 1.09717 1.18578 0.86756 0.84221 0.77035 1.90673 1.15552 1.87180 1.50380 1.47912 1.08487 1.05901 1.70489 1.22555 0.79793 1.00833 1.00621 1.21359 0.97135 0.86955 0.93502 1.44275 1.01816 1.02438 1.84696 1.18985 0.96883 0.85357 1.37769 0.89201 1.25239 0.98330 0.95585 0.98804 1.69734 1.38411 0.98225 1.49589 0.86949 0.84661 0.77620 0.78401 1.21825 1.23483 1.18824 1.21932 0.86437 0.98401 0.94434 1.22235 0.96939 0.83710 1.00049 1.19707 0.95033 0.92672 0.96569 1.22002 0.94125 1.01908 1.02432 1.21834 1.01805 0.99358 0.96471 1.21853 1.01777 0.99451 0.96557 0.91028 0.93165 0.88295 0.84895 0.91241 0.90241 0.95260 0.90582 0.92685 0.94277 0.90803 0.89731 0.91414 0.92022 0.92229 0.91975 0.92177 0.92155 0.92333 0.92303 0.92219 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 7.87 36.00 0.28 -1.24 16 2 C -0.03 -0.31 4.90 -101.17 -0.50 -0.80 16 3 C -0.23 -3.06 8.29 -37.81 -0.31 -3.37 16 4 C 0.54 9.21 7.56 -12.67 -0.10 9.11 16 5 O -0.56 -10.63 12.65 5.26 0.07 -10.57 16 6 N -0.60 -10.51 2.94 -173.61 -0.51 -11.03 16 7 C 0.09 1.35 6.54 -3.36 -0.02 1.33 16 8 C 0.14 2.56 6.69 -3.36 -0.02 2.54 16 9 N -0.61 -14.23 2.83 -171.77 -0.49 -14.71 16 10 C -0.26 -7.19 10.15 -15.06 -0.15 -7.34 16 11 H 0.09 2.61 8.05 -52.49 -0.42 2.18 16 12 C 0.02 0.54 5.43 -17.43 -0.09 0.45 16 13 N -0.92 -28.04 13.97 55.49 0.78 -27.27 16 14 Si 0.89 22.50 24.28 -169.99 -4.13 18.37 16 15 H -0.29 -7.13 6.85 56.52 0.39 -6.74 16 16 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 17 H -0.26 -6.43 5.34 56.52 0.30 -6.13 16 18 C 0.11 2.54 4.24 -3.60 -0.02 2.52 16 19 C 0.09 1.84 6.58 -3.60 -0.02 1.82 16 20 C -0.04 -0.35 0.82 -155.66 -0.13 -0.48 16 21 C -0.15 -1.18 7.14 37.16 0.27 -0.91 16 22 C -0.14 -1.07 8.31 37.16 0.31 -0.76 16 23 C -0.14 -1.10 8.31 37.16 0.31 -0.79 16 24 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 25 H 0.05 0.49 6.41 -51.93 -0.33 0.16 16 26 H 0.10 1.43 6.11 -51.93 -0.32 1.12 16 27 H 0.13 1.50 3.59 -52.48 -0.19 1.31 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.97 5.29 -51.93 -0.27 0.70 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 33 H 0.04 0.89 6.66 -51.93 -0.35 0.55 16 34 H 0.07 1.77 3.48 -51.93 -0.18 1.59 16 35 H 0.08 1.62 7.02 -51.93 -0.36 1.25 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.50 7.60 -51.93 -0.39 0.11 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.51 7.40 -51.93 -0.38 0.12 16 40 H 0.06 0.46 7.03 -51.93 -0.36 0.09 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.46 7.37 -51.93 -0.38 0.08 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -31.81 334.26 -6.86 -38.67 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.42 Total: -0.57 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.20 Total: 2.06 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.22 Total: -53.00 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.13 Total: 18.37 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.81 -6.86 -38.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.318 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds