Wall clock time and date at job start Tue Mar 31 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32990 * 119.99915 * 2 1 4 4 C 1.47104 * 120.00261 * 6.70395 * 3 2 1 5 5 O 1.21618 * 119.99487 * 6.94219 * 4 3 2 6 6 N 1.34772 * 120.00325 * 186.94503 * 4 3 2 7 7 C 1.46967 * 120.59536 * 354.95483 * 6 4 3 8 8 C 1.53813 * 108.39738 * 124.75970 * 7 6 4 9 9 N 1.46968 * 108.57726 * 49.64303 * 8 7 6 10 10 C 1.36933 * 120.59535 * 124.67033 * 9 8 7 11 11 H 1.07999 * 119.99899 * 334.23846 * 10 9 8 12 12 C 1.38812 * 119.99934 * 154.23912 * 10 9 8 13 13 N 1.31623 * 119.99743 * 169.62249 * 12 10 9 14 14 Si 1.86798 * 120.00300 * 349.62434 * 12 10 9 15 15 H 1.48497 * 109.46837 * 95.48283 * 14 12 10 16 16 H 1.48494 * 109.47079 * 215.48280 * 14 12 10 17 17 H 1.48502 * 109.46754 * 335.48514 * 14 12 10 18 18 C 1.46970 * 118.81030 * 304.64557 * 9 8 7 19 19 C 1.46968 * 120.59517 * 175.24195 * 6 4 3 20 20 C 1.50700 * 120.00254 * 180.02562 * 2 1 3 21 21 C 1.52998 * 109.47197 * 179.97438 * 20 2 1 22 22 C 1.53000 * 109.46982 * 299.99641 * 20 2 1 23 23 C 1.52997 * 109.47087 * 59.99400 * 20 2 1 24 24 H 1.08997 * 109.47579 * 67.13472 * 1 2 3 25 25 H 1.09005 * 109.46895 * 187.13857 * 1 2 3 26 26 H 1.09000 * 109.47248 * 307.13375 * 1 2 3 27 27 H 1.08008 * 120.00159 * 186.69815 * 3 2 1 28 28 H 1.08996 * 109.61134 * 244.55075 * 7 6 4 29 29 H 1.09006 * 109.60379 * 5.05810 * 7 6 4 30 30 H 1.09000 * 109.74425 * 289.85198 * 8 7 6 31 31 H 1.08994 * 109.53037 * 169.30385 * 8 7 6 32 32 H 0.96996 * 119.99942 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.60938 * 295.48210 * 18 9 8 34 34 H 1.08998 * 109.60616 * 174.97192 * 18 9 8 35 35 H 1.08996 * 109.60729 * 354.94552 * 19 6 4 36 36 H 1.09000 * 109.61139 * 115.45412 * 19 6 4 37 37 H 1.08996 * 109.47140 * 60.00123 * 21 20 2 38 38 H 1.09003 * 109.47065 * 180.02562 * 21 20 2 39 39 H 1.08996 * 109.46968 * 299.99638 * 21 20 2 40 40 H 1.09005 * 109.47019 * 59.99734 * 22 20 2 41 41 H 1.09004 * 109.47471 * 179.97438 * 22 20 2 42 42 H 1.08996 * 109.47352 * 299.99875 * 22 20 2 43 43 H 1.08996 * 109.47248 * 60.00259 * 23 20 2 44 44 H 1.09003 * 109.47235 * 180.02562 * 23 20 2 45 45 H 1.08996 * 109.47456 * 299.99909 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 1.4439 2.4214 0.1487 5 8 0.2535 2.4141 0.3977 6 7 2.0961 3.5925 0.0091 7 6 3.5530 3.6192 -0.1821 8 6 3.8595 4.4036 -1.4691 9 7 3.1273 5.6772 -1.4267 10 6 3.7900 6.8671 -1.5686 11 1 4.8340 6.9389 -1.3019 12 6 3.1197 7.9811 -2.0552 13 7 3.6886 9.1668 -2.0016 14 14 1.4105 7.7974 -2.7861 15 1 0.3929 8.0924 -1.7456 16 1 1.2513 8.7461 -3.9173 17 1 1.2287 6.4074 -3.2764 18 6 1.6711 5.6508 -1.2299 19 6 1.3639 4.8661 0.0514 20 6 2.2605 -1.3051 -0.0006 21 6 3.7647 -1.0254 -0.0011 22 6 1.8910 -2.1079 1.2484 23 6 1.8908 -2.1069 -1.2501 24 1 -0.3634 0.3993 -0.9469 25 1 -0.3633 -1.0198 0.1277 26 1 -0.3634 0.6204 0.8193 27 1 3.2464 1.1550 -0.1091 28 1 4.0248 4.1093 0.6695 29 1 3.9285 2.6000 -0.2748 30 1 3.5400 3.8267 -2.3369 31 1 4.9300 4.5990 -1.5306 32 1 3.2201 9.9453 -2.3412 33 1 1.1958 5.1626 -2.0807 34 1 1.2965 6.6699 -1.1335 35 1 0.2934 4.6707 0.1130 36 1 1.6835 5.4431 0.9193 37 1 4.0284 -0.4541 0.8889 38 1 4.3097 -1.9694 -0.0020 39 1 4.0276 -0.4537 -0.8911 40 1 0.8193 -2.3070 1.2483 41 1 2.4356 -3.0521 1.2478 42 1 2.1543 -1.5367 2.1385 43 1 2.1540 -1.5350 -2.1398 44 1 2.4355 -3.0510 -1.2503 45 1 0.8192 -2.3061 -1.2501 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073099799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:14 Heat of formation + Delta-G solvation = -2.947548 kcal Electronic energy + Delta-G solvation = -23064.705226 eV Core-core repulsion = 19890.054774 eV Total energy + Delta-G solvation = -3174.650452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30729 -39.40115 -38.38690 -35.73498 -33.54986 -33.34554 -32.27750 -29.95087 -28.85759 -28.08085 -27.08692 -25.43283 -25.17020 -23.48566 -22.24717 -20.25043 -18.92669 -18.36119 -18.16945 -17.30324 -16.57808 -16.27511 -16.08328 -15.99250 -15.57795 -15.13291 -15.07293 -14.69749 -14.51391 -14.34031 -14.11412 -13.81157 -13.58235 -13.42922 -13.18754 -12.93343 -12.92228 -12.69469 -12.50573 -12.35957 -12.14528 -12.00465 -11.87709 -11.85240 -11.77495 -11.43328 -11.35237 -10.97360 -10.47540 -10.15514 -9.75644 -8.88768 -8.17085 -5.54723 0.42244 1.25665 1.37793 1.43835 2.02760 2.30528 2.36229 3.07182 3.21928 3.47068 3.77531 3.91887 4.02948 4.07993 4.09620 4.12281 4.28629 4.34534 4.39520 4.50937 4.54134 4.63853 4.67958 4.77719 4.80574 4.81511 4.85494 4.89211 4.94163 5.04894 5.07030 5.10980 5.14739 5.19644 5.26441 5.35563 5.46003 5.50141 5.62647 5.69598 5.79494 6.08846 6.52888 6.82075 7.21757 7.54383 7.93962 9.02161 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.004211 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.482104 B = 6648.421180 C = 7015.776833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.009 4.009 3 C -0.248 4.248 4 C 0.538 3.462 5 O -0.584 6.584 6 N -0.604 5.604 7 C 0.096 3.904 8 C 0.131 3.869 9 N -0.622 5.622 10 C -0.243 4.243 11 H 0.066 0.934 12 C -0.040 4.040 13 N -0.963 5.963 14 Si 0.948 3.052 15 H -0.283 1.283 16 H -0.316 1.316 17 H -0.251 1.251 18 C 0.114 3.886 19 C 0.104 3.896 20 C -0.039 4.039 21 C -0.149 4.149 22 C -0.137 4.137 23 C -0.139 4.139 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.156 0.844 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.261 0.739 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -25.872 4.576 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.011 4.011 3 C -0.268 4.268 4 C 0.331 3.669 5 O -0.468 6.468 6 N -0.335 5.335 7 C -0.027 4.027 8 C 0.006 3.994 9 N -0.347 5.347 10 C -0.373 4.373 11 H 0.084 0.916 12 C -0.234 4.234 13 N -0.610 5.610 14 Si 0.780 3.220 15 H -0.211 1.211 16 H -0.246 1.246 17 H -0.175 1.175 18 C -0.011 4.011 19 C -0.021 4.021 20 C -0.039 4.039 21 C -0.206 4.206 22 C -0.194 4.194 23 C -0.196 4.196 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.173 0.827 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.339 -25.716 4.660 26.239 hybrid contribution -0.753 1.229 -0.433 1.505 sum -3.092 -24.487 4.227 25.041 Atomic orbital electron populations 1.21082 0.91858 1.02212 1.02817 1.22754 0.96200 0.94485 0.87683 1.22632 1.01628 0.90360 1.12173 1.19223 0.86620 0.84996 0.76024 1.90672 1.16934 1.87613 1.51543 1.48002 1.09165 1.05397 1.70961 1.22547 0.78783 1.02671 0.98721 1.21607 0.97123 0.85198 0.95497 1.44417 1.02440 1.02844 1.84974 1.18972 0.96010 0.86839 1.35455 0.91629 1.25862 1.01987 0.95400 1.00155 1.69867 1.40274 0.99023 1.51849 0.86009 0.80938 0.77720 0.77322 1.21097 1.24575 1.17498 1.21852 0.85709 0.97793 0.95793 1.21933 0.97376 0.84570 0.98200 1.19799 0.95345 0.91136 0.97596 1.22029 0.93377 1.02879 1.02362 1.21849 1.02156 0.99916 0.95505 1.21864 1.02120 1.00001 0.95608 0.92311 0.90680 0.90601 0.82718 0.91235 0.86114 0.94326 0.89898 0.92990 0.94464 0.92653 0.89605 0.91708 0.92092 0.90582 0.92031 0.92144 0.90287 0.92919 0.92922 0.90401 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 7.87 71.23 0.56 -2.27 16 2 C -0.01 -0.19 4.90 -17.62 -0.09 -0.28 16 3 C -0.25 -5.88 8.29 23.43 0.19 -5.69 16 4 C 0.54 17.34 7.56 86.57 0.65 18.00 16 5 O -0.58 -21.93 12.65 -4.09 -0.05 -21.98 16 6 N -0.60 -20.22 2.94 -821.42 -2.42 -22.64 16 7 C 0.10 2.75 6.54 86.56 0.57 3.32 16 8 C 0.13 4.63 6.69 86.56 0.58 5.21 16 9 N -0.62 -28.64 2.83 -697.34 -1.97 -30.62 16 10 C -0.24 -13.50 10.15 84.03 0.85 -12.65 16 11 H 0.07 3.90 8.05 -2.91 -0.02 3.87 16 12 C -0.04 -2.34 5.43 84.86 0.46 -1.88 16 13 N -0.96 -60.62 13.97 21.65 0.30 -60.32 16 14 Si 0.95 47.26 24.28 68.60 1.67 48.93 16 15 H -0.28 -13.61 6.85 99.48 0.68 -12.93 16 16 H -0.32 -16.10 7.11 99.48 0.71 -15.39 16 17 H -0.25 -11.80 5.34 99.48 0.53 -11.27 16 18 C 0.11 5.00 4.24 86.41 0.37 5.36 16 19 C 0.10 3.96 6.58 86.41 0.57 4.53 16 20 C -0.04 -0.54 0.82 -52.93 -0.04 -0.59 16 21 C -0.15 -1.80 7.14 71.98 0.51 -1.29 16 22 C -0.14 -1.65 8.31 71.98 0.60 -1.06 16 23 C -0.14 -1.70 8.31 71.98 0.60 -1.10 16 24 H 0.06 1.51 8.08 -2.39 -0.02 1.49 16 25 H 0.07 1.30 6.41 -2.38 -0.02 1.29 16 26 H 0.08 2.15 6.11 -2.39 -0.01 2.13 16 27 H 0.16 2.89 3.59 -2.91 -0.01 2.88 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.12 2.47 5.29 -2.38 -0.01 2.45 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 2.80 7.92 -2.39 -0.02 2.78 16 32 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 33 H 0.04 1.65 6.66 -2.38 -0.02 1.64 16 34 H 0.06 2.64 3.48 -2.39 -0.01 2.63 16 35 H 0.09 3.24 7.02 -2.39 -0.02 3.22 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.06 0.76 7.60 -2.39 -0.02 0.74 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 0.76 7.40 -2.39 -0.02 0.74 16 40 H 0.06 0.72 7.03 -2.38 -0.02 0.71 16 41 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.73 7.37 -2.39 -0.02 0.71 16 Total: -1.00 -69.86 334.26 4.68 -65.18 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.77 Total: 11.81 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.38 Total: 9.63 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -4.09 Total: -113.57 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.67 Total: 48.93 kcal Total: -69.86 4.68 -65.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.235 kcal (2) G-P(sol) polarization free energy of solvation -69.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds