Wall clock time and date at job start Tue Mar 31 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47263 * 2 1 4 4 C 1.53008 * 109.46778 * 119.99781 * 2 1 3 5 5 O 1.42897 * 109.46815 * 174.99743 * 4 2 1 6 6 C 1.42909 * 113.99667 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.87361 * 32.39451 * 6 5 4 8 8 C 1.55140 * 110.98965 * 268.54796 * 6 5 4 9 9 C 1.54323 * 103.01576 * 206.21954 * 8 6 5 10 10 N 1.47437 * 107.23398 * 22.28305 * 9 8 6 11 11 C 1.46904 * 110.99881 * 123.25802 * 10 9 8 12 12 C 1.53002 * 109.46972 * 69.87526 * 11 10 9 13 13 H 1.09000 * 109.47257 * 55.00230 * 12 11 10 14 14 C 1.47200 * 109.47251 * 294.99929 * 12 11 10 15 15 N 8.74307 * 134.08937 * 95.98416 * 2 1 3 16 16 C 1.53004 * 109.47059 * 175.00276 * 12 11 10 17 17 C 1.50699 * 109.46847 * 184.99953 * 16 12 11 18 18 H 1.08002 * 120.00511 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99783 * 179.97438 * 17 16 12 20 20 N 1.31514 * 119.99573 * 180.27665 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 89.99934 * 21 19 17 23 23 H 1.48499 * 109.47026 * 209.99782 * 21 19 17 24 24 H 1.48496 * 109.47474 * 329.99818 * 21 19 17 25 25 C 1.47841 * 108.56804 * 0.99283 * 10 9 8 26 26 H 1.09001 * 109.47520 * 300.00282 * 1 2 3 27 27 H 1.08998 * 109.46843 * 59.99961 * 1 2 3 28 28 H 1.08997 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47352 * 239.99341 * 2 1 3 30 30 H 1.09007 * 109.47299 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47223 * 299.99806 * 3 2 1 32 32 H 1.09002 * 109.47877 * 59.99919 * 3 2 1 33 33 H 1.09000 * 109.47155 * 54.99986 * 4 2 1 34 34 H 1.09001 * 109.47043 * 294.99829 * 4 2 1 35 35 H 1.08999 * 110.70538 * 87.84270 * 8 6 5 36 36 H 1.08997 * 110.85849 * 324.66767 * 8 6 5 37 37 H 1.09008 * 109.88597 * 262.87623 * 9 8 6 38 38 H 1.08996 * 110.02186 * 141.76934 * 9 8 6 39 39 H 1.08997 * 109.47284 * 309.87846 * 11 10 9 40 40 H 1.09005 * 109.47101 * 189.87445 * 11 10 9 41 41 H 1.08992 * 109.47264 * 65.00127 * 16 12 11 42 42 H 1.09005 * 109.46510 * 304.99713 * 16 12 11 43 43 H 0.97004 * 119.99485 * 179.72881 * 20 19 17 44 44 H 1.08999 * 110.37465 * 94.73236 * 25 10 9 45 45 H 1.09009 * 110.37469 * 217.07471 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 8 3.4641 -0.8239 1.1921 6 6 4.0449 -1.4847 2.3183 7 1 3.3753 -2.2525 2.7059 8 6 4.4232 -0.4664 3.4259 9 6 5.5719 -1.1763 4.1730 10 7 6.1492 -2.1670 3.2463 11 6 7.5880 -1.9368 3.0590 12 6 8.3330 -2.2905 4.3477 13 1 8.0907 -3.3126 4.6387 14 6 7.9269 -1.3660 5.4188 15 7 7.6133 -0.6547 6.2455 16 6 9.8404 -2.1703 4.1147 17 6 10.5774 -2.6359 5.3440 18 1 10.0258 -2.9832 6.2052 19 6 11.9559 -2.6195 5.3689 20 7 12.5991 -3.0309 6.4397 21 14 12.9098 -2.0208 3.8786 22 1 13.1379 -0.5578 3.9920 23 1 14.2172 -2.7220 3.8134 24 1 12.1329 -2.3067 2.6459 25 6 5.4274 -2.0839 1.9588 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6053 -1.7198 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.5793 -0.2917 4.0933 36 1 4.7685 0.4710 2.9898 37 1 5.1832 -1.6792 5.0586 38 1 6.3328 -0.4516 4.4624 39 1 7.7596 -0.8882 2.8163 40 1 7.9531 -2.5628 2.2447 41 1 10.0948 -1.1303 3.9108 42 1 10.1268 -2.7881 3.2635 43 1 13.5689 -3.0231 6.4558 44 1 5.9574 -1.4279 1.2682 45 1 5.3093 -3.0770 1.5251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089840277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:20 Heat of formation + Delta-G solvation = -28.919425 kcal Electronic energy + Delta-G solvation = -21843.121713 eV Core-core repulsion = 18667.345036 eV Total energy + Delta-G solvation = -3175.776677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.74343 -38.10259 -36.31384 -35.02034 -33.94354 -32.28890 -30.31717 -28.83322 -27.49126 -26.88471 -25.89189 -23.54233 -21.66097 -21.13827 -20.73839 -20.40902 -17.50205 -16.88182 -16.76116 -16.29258 -15.66368 -15.02154 -14.85051 -14.38458 -14.29429 -13.83804 -13.51325 -13.48193 -13.15451 -12.82899 -12.77873 -12.62107 -12.55210 -12.49275 -12.20162 -11.99988 -11.67550 -11.45009 -11.30756 -11.23350 -11.12305 -10.98750 -10.91038 -10.79791 -10.62758 -10.29096 -9.97686 -9.78546 -9.63865 -9.32167 -8.61187 -8.33283 -6.10180 -4.10776 3.23462 3.27370 3.35099 3.35445 3.54337 3.60218 4.07743 4.38715 4.43427 4.51260 4.57123 4.62267 4.71640 4.79621 4.90226 5.06278 5.15172 5.19927 5.24413 5.25204 5.31959 5.39229 5.46369 5.51906 5.52164 5.59494 5.63591 5.69034 5.72719 5.84797 5.89786 5.94292 5.96755 6.02104 6.10753 6.18471 6.36603 6.86340 6.95952 7.02826 7.07317 7.14474 7.64024 8.34585 8.43073 8.93444 9.49603 11.02915 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.002972 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.475453 B = 9419.516569 C = 9760.258887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.145 4.145 4 C 0.066 3.934 5 O -0.375 6.375 6 C 0.080 3.920 7 H 0.077 0.923 8 C -0.162 4.162 9 C 0.031 3.969 10 N -0.525 5.525 11 C 0.056 3.944 12 C 0.018 3.982 13 H 0.117 0.883 14 C 0.247 3.753 15 N -0.473 5.473 16 C -0.004 4.004 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.262 1.262 25 C 0.049 3.951 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.095 0.905 41 H 0.019 0.981 42 H 0.039 0.961 43 H 0.264 0.736 44 H 0.059 0.941 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.957 3.886 -14.897 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.010 4.010 5 O -0.293 6.293 6 C 0.021 3.979 7 H 0.095 0.905 8 C -0.201 4.201 9 C -0.097 4.097 10 N -0.250 5.250 11 C -0.073 4.073 12 C -0.004 4.004 13 H 0.134 0.866 14 C -0.069 4.069 15 N -0.150 5.150 16 C -0.043 4.043 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.079 4.079 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.113 0.887 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.189 4.504 -13.510 26.366 hybrid contribution 0.790 0.753 -0.910 1.421 sum -21.399 5.257 -14.420 26.334 Atomic orbital electron populations 1.21790 0.94382 1.01983 1.02227 1.21100 0.95401 0.96972 0.97920 1.21787 1.02016 0.95058 1.01341 1.22607 0.81276 0.99138 0.98006 1.87868 1.19891 1.78739 1.42839 1.23235 0.94972 0.93533 0.86113 0.90539 1.23259 0.99267 0.99511 0.98088 1.23106 0.96403 0.93843 0.96345 1.63665 1.03388 1.48560 1.09369 1.22455 0.86529 1.00382 0.97952 1.19079 0.97923 0.96419 0.86983 0.86565 1.28943 0.90746 0.93414 0.93804 1.81008 1.11847 1.11394 1.10713 1.19642 0.87999 0.97627 0.99077 1.21027 0.91633 1.44013 0.99842 0.90776 1.24999 0.97726 0.94560 0.95877 1.69909 1.08293 1.47002 1.28302 0.86813 0.79648 0.79168 0.83886 1.20328 1.21243 1.18656 1.22948 0.92127 1.01025 0.91793 0.92525 0.92022 0.92496 0.90350 0.91801 0.92849 0.92952 0.93337 0.93414 0.90982 0.90657 0.90375 0.91187 0.93960 0.88677 0.96305 0.94251 0.92571 0.92305 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.19 37.16 0.34 -0.49 16 2 C -0.10 -0.70 3.16 -90.62 -0.29 -0.99 16 3 C -0.14 -1.11 9.09 37.15 0.34 -0.77 16 4 C 0.07 0.56 5.20 37.16 0.19 0.75 16 5 O -0.37 -4.03 9.69 -35.23 -0.34 -4.37 16 6 C 0.08 0.86 3.48 -24.59 -0.09 0.77 16 7 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 8 C -0.16 -1.89 6.68 -24.91 -0.17 -2.05 16 9 C 0.03 0.43 5.24 -2.84 -0.01 0.41 16 10 N -0.52 -7.04 5.16 -231.25 -1.19 -8.23 16 11 C 0.06 0.80 4.34 -3.82 -0.02 0.78 16 12 C 0.02 0.32 2.42 -93.40 -0.23 0.10 16 13 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 14 C 0.25 4.98 10.66 -20.80 -0.22 4.76 16 15 N -0.47 -10.25 17.68 42.11 0.74 -9.51 16 16 C 0.00 -0.10 3.49 -27.88 -0.10 -0.19 16 17 C -0.53 -14.25 9.15 -34.44 -0.32 -14.56 16 18 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 21 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 25 C 0.05 0.56 6.42 -2.30 -0.01 0.54 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.58 7.82 -51.92 -0.41 0.17 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.37 8.11 -51.93 -0.42 -0.05 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 38 H 0.07 1.12 4.76 -51.93 -0.25 0.87 16 39 H 0.04 0.61 7.96 -51.93 -0.41 0.19 16 40 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 42 H 0.04 0.80 7.20 -51.93 -0.37 0.42 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.06 0.68 7.81 -51.93 -0.41 0.27 16 45 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -30.53 359.76 -8.07 -38.60 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -8.14 Total: -2.51 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.67 Total: -9.06 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.33 Total: -44.12 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.34 Total: -4.37 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.53 -8.07 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089840277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.684 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds