Wall clock time and date at job start Tue Mar 31 2020 02:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47263 * 2 1 4 4 C 1.53008 * 109.46778 * 119.99781 * 2 1 3 5 5 O 1.42897 * 109.46815 * 174.99743 * 4 2 1 6 6 C 1.42909 * 113.99667 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.87361 * 32.39451 * 6 5 4 8 8 C 1.55140 * 110.98965 * 268.54796 * 6 5 4 9 9 C 1.54323 * 103.01576 * 206.21954 * 8 6 5 10 10 N 1.47437 * 107.23398 * 22.28305 * 9 8 6 11 11 C 1.46904 * 110.99881 * 123.25802 * 10 9 8 12 12 C 1.53002 * 109.46972 * 69.87526 * 11 10 9 13 13 H 1.09000 * 109.47257 * 55.00230 * 12 11 10 14 14 C 1.47200 * 109.47251 * 294.99929 * 12 11 10 15 15 N 8.74307 * 134.08937 * 95.98416 * 2 1 3 16 16 C 1.53004 * 109.47059 * 175.00276 * 12 11 10 17 17 C 1.50699 * 109.46847 * 184.99953 * 16 12 11 18 18 H 1.08002 * 120.00511 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99783 * 179.97438 * 17 16 12 20 20 N 1.31514 * 119.99573 * 180.27665 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 89.99934 * 21 19 17 23 23 H 1.48499 * 109.47026 * 209.99782 * 21 19 17 24 24 H 1.48496 * 109.47474 * 329.99818 * 21 19 17 25 25 C 1.47841 * 108.56804 * 0.99283 * 10 9 8 26 26 H 1.09001 * 109.47520 * 300.00282 * 1 2 3 27 27 H 1.08998 * 109.46843 * 59.99961 * 1 2 3 28 28 H 1.08997 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47352 * 239.99341 * 2 1 3 30 30 H 1.09007 * 109.47299 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47223 * 299.99806 * 3 2 1 32 32 H 1.09002 * 109.47877 * 59.99919 * 3 2 1 33 33 H 1.09000 * 109.47155 * 54.99986 * 4 2 1 34 34 H 1.09001 * 109.47043 * 294.99829 * 4 2 1 35 35 H 1.08999 * 110.70538 * 87.84270 * 8 6 5 36 36 H 1.08997 * 110.85849 * 324.66767 * 8 6 5 37 37 H 1.09008 * 109.88597 * 262.87623 * 9 8 6 38 38 H 1.08996 * 110.02186 * 141.76934 * 9 8 6 39 39 H 1.08997 * 109.47284 * 309.87846 * 11 10 9 40 40 H 1.09005 * 109.47101 * 189.87445 * 11 10 9 41 41 H 1.08992 * 109.47264 * 65.00127 * 16 12 11 42 42 H 1.09005 * 109.46510 * 304.99713 * 16 12 11 43 43 H 0.97004 * 119.99485 * 179.72881 * 20 19 17 44 44 H 1.08999 * 110.37465 * 94.73236 * 25 10 9 45 45 H 1.09009 * 110.37469 * 217.07471 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 8 3.4641 -0.8239 1.1921 6 6 4.0449 -1.4847 2.3183 7 1 3.3753 -2.2525 2.7059 8 6 4.4232 -0.4664 3.4259 9 6 5.5719 -1.1763 4.1730 10 7 6.1492 -2.1670 3.2463 11 6 7.5880 -1.9368 3.0590 12 6 8.3330 -2.2905 4.3477 13 1 8.0907 -3.3126 4.6387 14 6 7.9269 -1.3660 5.4188 15 7 7.6133 -0.6547 6.2455 16 6 9.8404 -2.1703 4.1147 17 6 10.5774 -2.6359 5.3440 18 1 10.0258 -2.9832 6.2052 19 6 11.9559 -2.6195 5.3689 20 7 12.5991 -3.0309 6.4397 21 14 12.9098 -2.0208 3.8786 22 1 13.1379 -0.5578 3.9920 23 1 14.2172 -2.7220 3.8134 24 1 12.1329 -2.3067 2.6459 25 6 5.4274 -2.0839 1.9588 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6053 -1.7198 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.5793 -0.2917 4.0933 36 1 4.7685 0.4710 2.9898 37 1 5.1832 -1.6792 5.0586 38 1 6.3328 -0.4516 4.4624 39 1 7.7596 -0.8882 2.8163 40 1 7.9531 -2.5628 2.2447 41 1 10.0948 -1.1303 3.9108 42 1 10.1268 -2.7881 3.2635 43 1 13.5689 -3.0231 6.4558 44 1 5.9574 -1.4279 1.2682 45 1 5.3093 -3.0770 1.5251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089840277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:19 Heat of formation + Delta-G solvation = -48.303990 kcal Electronic energy + Delta-G solvation = -21843.962291 eV Core-core repulsion = 18667.345036 eV Total energy + Delta-G solvation = -3176.617255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73433 -39.07036 -37.57938 -35.92543 -35.53429 -34.07272 -31.61813 -29.83928 -28.36513 -28.01342 -26.64769 -24.85260 -23.36252 -22.09341 -21.78687 -21.05771 -18.89947 -18.62314 -17.90604 -17.30557 -16.44975 -16.32268 -15.87836 -15.66681 -15.23152 -15.06382 -14.86790 -14.57731 -14.45015 -14.10989 -13.88486 -13.84542 -13.57887 -13.50667 -13.31129 -13.01915 -13.00139 -12.61803 -12.42427 -12.41092 -12.20663 -11.94847 -11.92002 -11.73721 -11.71404 -11.61634 -11.46348 -11.44840 -11.26120 -10.73532 -10.47328 -9.38087 -8.24474 -6.30135 1.43810 1.44747 1.56155 1.93899 1.96774 2.41325 2.44798 3.09195 3.11436 3.23192 3.60260 3.62418 3.94523 3.96060 4.03968 4.07952 4.20038 4.22327 4.35954 4.46988 4.53054 4.58358 4.62663 4.69253 4.72527 4.79119 4.81780 4.84953 4.87877 4.90164 4.99723 5.03776 5.05723 5.09456 5.23483 5.24929 5.41295 5.43037 5.44847 5.63219 5.87067 5.99052 6.26493 6.30080 6.73787 6.80088 7.34115 8.92455 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.002972 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.475453 B = 9419.516569 C = 9760.258887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.061 3.939 5 O -0.386 6.386 6 C 0.086 3.914 7 H 0.087 0.913 8 C -0.157 4.157 9 C 0.033 3.967 10 N -0.529 5.529 11 C 0.065 3.935 12 C 0.023 3.977 13 H 0.119 0.881 14 C 0.254 3.746 15 N -0.508 5.508 16 C -0.002 4.002 17 C -0.530 4.530 18 H 0.028 0.972 19 C 0.002 3.998 20 N -0.954 5.954 21 Si 0.948 3.052 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.221 1.221 25 C 0.050 3.950 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.123 0.877 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.265 0.735 44 H 0.060 0.940 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.205 3.939 -18.128 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.015 4.015 5 O -0.305 6.305 6 C 0.028 3.972 7 H 0.105 0.895 8 C -0.195 4.195 9 C -0.096 4.096 10 N -0.254 5.254 11 C -0.064 4.064 12 C 0.001 3.999 13 H 0.137 0.863 14 C -0.061 4.061 15 N -0.185 5.185 16 C -0.041 4.041 17 C -0.568 4.568 18 H 0.046 0.954 19 C -0.195 4.195 20 N -0.595 5.595 21 Si 0.771 3.229 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.144 1.144 25 C -0.077 4.077 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.142 0.858 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.479 4.557 -16.762 29.206 hybrid contribution 1.099 0.720 0.194 1.328 sum -22.380 5.277 -16.568 28.341 Atomic orbital electron populations 1.21767 0.92989 1.02587 1.02695 1.21117 0.96503 0.96409 0.97270 1.21773 1.00873 0.95603 1.01847 1.22778 0.80181 0.99958 0.98580 1.87859 1.21230 1.78782 1.42631 1.23159 0.95042 0.93251 0.85777 0.89494 1.23199 0.98668 0.99255 0.98421 1.22983 0.96560 0.93485 0.96543 1.63623 1.03071 1.48241 1.10474 1.22375 0.86783 1.01119 0.96145 1.19133 0.96467 0.96066 0.88207 0.86290 1.29504 0.89927 0.93051 0.93631 1.80994 1.12958 1.12657 1.11921 1.19591 0.89440 0.97941 0.97122 1.21390 0.91914 1.42936 1.00594 0.95381 1.26059 0.99138 0.94917 0.99375 1.70093 1.08621 1.49486 1.31294 0.85695 0.78073 0.78125 0.81001 1.20345 1.21508 1.14359 1.23014 0.92087 1.02083 0.90566 0.92331 0.91310 0.91841 0.90693 0.93500 0.91894 0.92938 0.92247 0.93316 0.90101 0.91350 0.91597 0.93486 0.93739 0.85849 0.95781 0.91442 0.92661 0.92183 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.19 71.98 0.66 -0.66 16 2 C -0.09 -1.22 3.16 -10.79 -0.03 -1.25 16 3 C -0.14 -2.01 9.09 71.98 0.65 -1.35 16 4 C 0.06 0.91 5.20 71.98 0.37 1.28 16 5 O -0.39 -7.49 9.69 -148.98 -1.44 -8.94 16 6 C 0.09 1.66 3.48 31.98 0.11 1.77 16 7 H 0.09 1.50 7.90 -2.39 -0.02 1.48 16 8 C -0.16 -3.44 6.68 31.78 0.21 -3.22 16 9 C 0.03 0.88 5.24 86.65 0.45 1.33 16 10 N -0.53 -13.04 5.16 -885.53 -4.57 -17.60 16 11 C 0.06 1.67 4.34 86.30 0.37 2.04 16 12 C 0.02 0.80 2.42 -12.60 -0.03 0.77 16 13 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 14 C 0.25 10.31 10.66 89.46 0.95 11.27 16 15 N -0.51 -22.51 17.68 19.99 0.35 -22.15 16 16 C 0.00 -0.08 3.49 29.85 0.10 0.03 16 17 C -0.53 -28.91 9.15 25.60 0.23 -28.67 16 18 H 0.03 1.73 7.84 -2.91 -0.02 1.71 16 19 C 0.00 0.10 5.47 84.66 0.46 0.56 16 20 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 21 Si 0.95 41.67 27.47 68.60 1.88 43.56 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.22 -8.23 6.54 99.48 0.65 -7.58 16 25 C 0.05 0.99 6.42 86.77 0.56 1.54 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.81 7.82 -2.38 -0.02 0.79 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.75 8.11 -2.39 -0.02 0.73 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.05 1.49 4.76 -2.39 -0.01 1.48 16 39 H 0.04 1.15 7.96 -2.39 -0.02 1.13 16 40 H 0.12 2.53 8.07 -2.38 -0.02 2.51 16 41 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 42 H 0.07 2.43 7.20 -2.38 -0.02 2.41 16 43 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.06 1.20 7.81 -2.39 -0.02 1.18 16 45 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -67.93 359.76 2.49 -65.44 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.88 Total: 13.49 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 5.09 Total: -14.57 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -3.91 Total: -98.97 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.44 Total: -8.94 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.56 kcal Total: -67.93 2.49 -65.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089840277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.133 kcal (2) G-P(sol) polarization free energy of solvation -67.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds