Wall clock time and date at job start Tue Mar 31 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.53008 * 109.47129 * 119.99723 * 2 1 3 5 5 O 1.42900 * 109.46833 * 175.00178 * 4 2 1 6 6 C 1.42901 * 113.99911 * 180.02562 * 5 4 2 7 7 H 1.09003 * 110.76006 * 328.24975 * 6 5 4 8 8 C 1.55138 * 110.70939 * 91.44788 * 6 5 4 9 9 C 1.54908 * 101.68619 * 154.02145 * 8 6 5 10 10 N 1.47887 * 104.77420 * 322.97931 * 9 8 6 11 11 C 1.46907 * 111.01481 * 146.33028 * 10 9 8 12 12 C 1.52999 * 109.46903 * 69.12508 * 11 10 9 13 13 H 1.09001 * 109.47188 * 304.99825 * 12 11 10 14 14 C 1.47206 * 109.47298 * 64.99876 * 12 11 10 15 15 N 9.24784 * 153.86485 * 139.47111 * 2 1 3 16 16 C 1.52998 * 109.47284 * 184.99705 * 12 11 10 17 17 C 1.50691 * 109.47366 * 174.99735 * 16 12 11 18 18 H 1.08005 * 120.00239 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00376 * 179.97438 * 17 16 12 20 20 N 1.31518 * 119.99683 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00525 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46682 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47205 * 120.00121 * 21 19 17 24 24 H 1.48498 * 109.47234 * 240.00423 * 21 19 17 25 25 C 1.47444 * 108.58784 * 24.04325 * 10 9 8 26 26 H 1.09001 * 109.47185 * 300.00208 * 1 2 3 27 27 H 1.08993 * 109.47062 * 60.00380 * 1 2 3 28 28 H 1.09001 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47185 * 239.99792 * 2 1 3 30 30 H 1.08998 * 109.46923 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46600 * 299.99819 * 3 2 1 32 32 H 1.09001 * 109.47184 * 59.99791 * 3 2 1 33 33 H 1.09001 * 109.46777 * 55.00448 * 4 2 1 34 34 H 1.08993 * 109.46923 * 294.99786 * 4 2 1 35 35 H 1.09002 * 110.99302 * 272.13145 * 8 6 5 36 36 H 1.08995 * 110.99003 * 35.91032 * 8 6 5 37 37 H 1.08993 * 110.37866 * 81.77867 * 9 8 6 38 38 H 1.09005 * 110.37455 * 204.12444 * 9 8 6 39 39 H 1.09005 * 109.46832 * 189.12286 * 11 10 9 40 40 H 1.08994 * 109.46980 * 309.12661 * 11 10 9 41 41 H 1.08996 * 109.47101 * 295.00514 * 16 12 11 42 42 H 1.09008 * 109.46684 * 55.00070 * 16 12 11 43 43 H 0.96996 * 119.99959 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.89066 * 239.63908 * 25 10 9 45 45 H 1.09001 * 109.89084 * 118.44467 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8237 1.1921 6 6 4.0450 -1.4855 2.3176 7 1 3.4574 -1.3046 3.2177 8 6 4.1822 -3.0072 2.0486 9 6 5.3628 -3.3849 2.9777 10 7 6.2815 -2.2280 2.9094 11 6 6.9612 -2.0185 4.1948 12 6 7.9443 -3.1640 4.4445 13 1 7.4166 -4.1157 4.3819 14 6 9.0099 -3.1261 3.4296 15 7 9.8323 -3.0962 2.6471 16 6 8.5604 -3.0130 5.8367 17 6 9.4341 -4.2049 6.1314 18 1 9.5397 -4.9914 5.3988 19 6 10.0995 -4.2911 7.3359 20 7 9.9713 -3.3331 8.2279 21 14 11.1830 -5.7682 7.7010 22 1 11.1593 -6.6976 6.5430 23 1 12.5760 -5.3130 7.9414 24 1 10.6756 -6.4680 8.9084 25 6 5.5070 -1.0351 2.5207 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1582 2.1370 35 1 3.2743 -3.5379 2.3355 36 1 4.4303 -3.1983 1.0046 37 1 5.0107 -3.5296 3.9990 38 1 5.8581 -4.2855 2.6149 39 1 7.5036 -1.0733 4.1691 40 1 6.2229 -1.9921 4.9961 41 1 9.1615 -2.1044 5.8714 42 1 7.7662 -2.9518 6.5808 43 1 10.4391 -3.3939 9.0754 44 1 5.9008 -0.6239 1.5913 45 1 5.5578 -0.2862 3.3111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107589813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:26 Heat of formation + Delta-G solvation = -58.546214 kcal Electronic energy + Delta-G solvation = -21647.790089 eV Core-core repulsion = 18470.728698 eV Total energy + Delta-G solvation = -3177.061391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55758 -38.88286 -37.62370 -35.90529 -35.44397 -33.90636 -31.39355 -29.69378 -28.09244 -27.97770 -26.61026 -24.88342 -23.55388 -22.11076 -21.82910 -21.06785 -18.58602 -18.16874 -18.00558 -16.94490 -16.59844 -16.54585 -16.01651 -15.54033 -15.11367 -14.84680 -14.60001 -14.49977 -14.28823 -14.14887 -13.84532 -13.56509 -13.54020 -13.18753 -13.08949 -13.00219 -12.91036 -12.67079 -12.49362 -12.46069 -12.35871 -12.16486 -11.93382 -11.85295 -11.76878 -11.58832 -11.43732 -11.36831 -11.11739 -10.55483 -10.40628 -9.24543 -8.19608 -6.27485 1.38939 1.42327 1.52647 2.06351 2.14049 2.41366 2.59579 3.03966 3.16018 3.35104 3.63741 3.79726 3.92599 3.99406 4.11322 4.16424 4.24213 4.34173 4.40842 4.50017 4.58102 4.62536 4.67355 4.73425 4.76463 4.82223 4.84857 4.94419 4.97147 4.99044 5.03408 5.05823 5.10230 5.19258 5.25129 5.43334 5.45469 5.46760 5.61830 5.79209 6.02879 6.05882 6.22409 6.35590 6.83291 6.93220 7.41046 8.91516 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038479 B = 0.002738 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.492825 B =10223.849235 C =10332.129400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.062 3.938 5 O -0.390 6.390 6 C 0.074 3.926 7 H 0.084 0.916 8 C -0.143 4.143 9 C 0.037 3.963 10 N -0.546 5.546 11 C 0.067 3.933 12 C 0.023 3.977 13 H 0.116 0.884 14 C 0.266 3.734 15 N -0.516 5.516 16 C 0.038 3.962 17 C -0.537 4.537 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.948 3.052 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.049 3.951 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.001 0.999 42 H 0.037 0.963 43 H 0.264 0.736 44 H 0.071 0.929 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.685 5.767 -11.414 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.014 4.014 5 O -0.309 6.309 6 C 0.016 3.984 7 H 0.102 0.898 8 C -0.181 4.181 9 C -0.090 4.090 10 N -0.271 5.271 11 C -0.062 4.062 12 C 0.002 3.998 13 H 0.133 0.867 14 C -0.050 4.050 15 N -0.193 5.193 16 C -0.001 4.001 17 C -0.575 4.575 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.774 3.226 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.079 4.079 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.020 0.980 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.907 5.849 -12.956 25.282 hybrid contribution 0.138 -0.625 1.468 1.602 sum -20.769 5.224 -11.488 24.302 Atomic orbital electron populations 1.21759 0.92897 1.02508 1.02782 1.21126 0.96575 0.96557 0.97242 1.21771 1.00875 0.95434 1.01972 1.22761 0.80270 0.99764 0.98638 1.87902 1.21155 1.78588 1.43263 1.23315 0.94042 0.91817 0.89270 0.89795 1.23149 0.98652 0.95778 1.00498 1.23110 0.92013 0.94102 0.99752 1.63549 1.29182 1.04493 1.29884 1.22317 0.96075 0.97284 0.90519 1.19161 0.89259 1.01614 0.89808 0.86660 1.29369 0.92983 0.90780 0.91894 1.80953 1.12884 1.11242 1.14242 1.19001 0.95721 0.95900 0.89462 1.21566 1.28348 1.06456 1.01163 0.92907 1.25707 0.97950 0.98730 0.96388 1.70034 1.44094 1.34159 1.08013 0.85645 0.78571 0.79975 0.78391 1.19466 1.21180 1.19681 1.22728 0.91132 0.92471 1.01575 0.91979 0.91451 0.92009 0.91348 0.93536 0.92077 0.92456 0.92611 0.92653 0.88804 0.91084 0.91367 0.90473 0.90628 0.90560 0.98041 0.94429 0.92702 0.91080 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 71.98 0.66 -0.69 16 2 C -0.10 -1.31 3.16 -10.79 -0.03 -1.35 16 3 C -0.14 -2.03 9.09 71.98 0.65 -1.38 16 4 C 0.06 0.93 5.19 71.98 0.37 1.30 16 5 O -0.39 -7.99 9.61 -148.98 -1.43 -9.42 16 6 C 0.07 1.42 3.39 31.77 0.11 1.53 16 7 H 0.08 1.34 7.88 -2.39 -0.02 1.32 16 8 C -0.14 -2.65 6.80 31.98 0.22 -2.44 16 9 C 0.04 0.82 5.72 86.77 0.50 1.32 16 10 N -0.55 -14.46 4.86 -885.40 -4.30 -18.76 16 11 C 0.07 1.92 3.93 86.30 0.34 2.26 16 12 C 0.02 0.85 2.21 -12.60 -0.03 0.82 16 13 H 0.12 3.85 7.34 -2.39 -0.02 3.83 16 14 C 0.27 11.32 13.67 89.45 1.22 12.54 16 15 N -0.52 -24.08 18.53 20.00 0.37 -23.70 16 16 C 0.04 1.75 4.42 29.84 0.13 1.88 16 17 C -0.54 -28.52 8.60 25.60 0.22 -28.30 16 18 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 19 C 0.01 0.61 5.46 84.65 0.46 1.07 16 20 N -0.92 -52.85 13.29 21.45 0.28 -52.56 16 21 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.05 1.12 6.64 86.65 0.58 1.70 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.74 8.11 -2.39 -0.02 0.72 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.34 7.62 -2.39 -0.02 1.32 16 38 H 0.08 1.81 8.12 -2.38 -0.02 1.79 16 39 H 0.08 2.24 8.03 -2.38 -0.02 2.22 16 40 H 0.08 1.88 7.85 -2.39 -0.02 1.87 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.04 1.72 8.14 -2.38 -0.02 1.71 16 43 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.07 1.86 8.06 -2.39 -0.02 1.84 16 45 H 0.07 1.50 7.55 -2.39 -0.02 1.48 16 Total: -1.00 -64.18 368.47 3.27 -60.91 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.93 Total: 7.73 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.40 Total: -9.73 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.65 Total: -95.03 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -1.43 Total: -9.42 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.18 3.27 -60.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107589813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.362 kcal (2) G-P(sol) polarization free energy of solvation -64.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds