Wall clock time and date at job start Tue Mar 31 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46897 * 2 1 4 4 H 1.08999 * 110.89034 * 302.64405 * 3 2 1 5 5 C 1.54624 * 110.97140 * 66.45733 * 3 2 1 6 6 C 1.51288 * 104.19836 * 93.31803 * 5 3 2 7 7 O 1.21276 * 124.94379 * 196.23298 * 6 5 3 8 8 N 1.34418 * 110.10840 * 16.25450 * 6 5 3 9 9 C 1.46510 * 124.34449 * 180.40716 * 8 6 5 10 10 N 1.46904 * 109.46724 * 80.29669 * 9 8 6 11 11 C 1.46904 * 111.00011 * 84.86233 * 10 9 8 12 12 C 1.50704 * 109.46893 * 189.99614 * 11 10 9 13 13 H 1.07999 * 120.00062 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99568 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00559 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99761 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47099 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47191 * 119.99877 * 16 14 12 19 19 H 1.48500 * 109.47029 * 240.00319 * 16 14 12 20 20 C 1.46896 * 110.99741 * 208.81283 * 10 9 8 21 21 C 1.52996 * 109.47301 * 71.68043 * 20 10 9 22 22 C 1.52999 * 117.50413 * 244.04493 * 21 20 10 23 23 C 1.53001 * 117.50136 * 175.38228 * 21 20 10 24 24 C 1.46757 * 111.30638 * 0.67351 * 8 6 5 25 25 H 1.08994 * 109.47421 * 59.99711 * 1 2 3 26 26 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46957 * 299.99542 * 1 2 3 28 28 H 1.08999 * 109.46470 * 240.00316 * 2 1 3 29 29 H 1.08994 * 109.47421 * 120.00289 * 2 1 3 30 30 H 1.09005 * 110.48507 * 334.64357 * 5 3 2 31 31 H 1.08996 * 110.60356 * 212.05057 * 5 3 2 32 32 H 1.08989 * 109.46949 * 320.29721 * 9 8 6 33 33 H 1.08999 * 109.46633 * 200.29142 * 9 8 6 34 34 H 1.08999 * 109.47079 * 69.99640 * 11 10 9 35 35 H 1.09001 * 109.46942 * 309.99557 * 11 10 9 36 36 H 0.96999 * 120.00095 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.47270 * 191.68316 * 20 10 9 38 38 H 1.09004 * 109.47119 * 311.68323 * 20 10 9 39 39 H 1.09004 * 115.54942 * 29.71187 * 21 20 10 40 40 H 1.09008 * 117.49747 * 359.97438 * 22 21 20 41 41 H 1.08994 * 117.50011 * 145.01792 * 22 21 20 42 42 H 1.09004 * 117.49662 * 214.98315 * 23 21 20 43 43 H 1.08995 * 117.49784 * 359.97438 * 23 21 20 44 44 H 1.09000 * 110.24827 * 101.71714 * 24 8 6 45 45 H 1.09003 * 110.24795 * 223.71704 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6516 1.9920 -0.8575 5 6 1.6807 2.1564 1.3236 6 6 2.8979 1.9511 2.1983 7 8 2.9239 2.1082 3.4005 8 7 3.9465 1.5695 1.4488 9 6 5.2800 1.2775 1.9807 10 7 5.2961 -0.0791 2.5442 11 6 5.5588 -1.0794 1.5009 12 6 5.3267 -2.4600 2.0588 13 1 5.0156 -2.5821 3.0858 14 6 5.5115 -3.5671 1.2582 15 7 5.8907 -3.4184 0.0077 16 14 5.2231 -5.2783 1.9495 17 1 4.8059 -5.1741 3.3709 18 1 4.1565 -5.9546 1.1683 19 1 6.4784 -6.0666 1.8592 20 6 6.2758 -0.1850 3.6336 21 6 5.7628 0.5774 4.8568 22 6 6.5693 1.7914 5.3221 23 6 6.5937 0.4971 6.1390 24 6 3.5856 1.4891 0.0286 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.8025 1.6978 1.7783 31 1 1.5093 3.2190 1.1520 32 1 5.5257 1.9979 2.7608 33 1 6.0143 1.3463 1.1781 34 1 6.5922 -0.9920 1.1656 35 1 4.8880 -0.9105 0.6585 36 1 6.0211 -4.1974 -0.5555 37 1 6.4188 -1.2340 3.8929 38 1 7.2254 0.2423 3.3111 39 1 4.6788 0.6233 4.9616 40 1 7.4658 2.0467 4.7570 41 1 6.0161 2.6357 5.7334 42 1 6.0563 0.4904 7.0874 43 1 7.5056 -0.0993 6.1112 44 1 3.9491 2.3683 -0.5034 45 1 3.9974 0.5823 -0.4145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119294498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:52 Heat of formation + Delta-G solvation = -11.010057 kcal Electronic energy + Delta-G solvation = -23322.168609 eV Core-core repulsion = 20147.168541 eV Total energy + Delta-G solvation = -3175.000068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11305 -37.66934 -36.36548 -35.47210 -33.49583 -32.34712 -29.91211 -27.61607 -27.21428 -26.19210 -23.82859 -23.10194 -22.01901 -21.05141 -20.15214 -19.76110 -18.83506 -16.66030 -16.19701 -15.94961 -15.29894 -15.20170 -14.65597 -14.30384 -13.98212 -13.88661 -13.51122 -13.26411 -13.22328 -12.97868 -12.37617 -12.11651 -11.95059 -11.77741 -11.68830 -11.66559 -11.33300 -11.16625 -10.91195 -10.74824 -10.68780 -10.56423 -10.46071 -10.41720 -10.10105 -9.63508 -9.43709 -9.35764 -9.15957 -8.49945 -8.25679 -7.30063 -6.06249 -4.06559 3.07011 3.28750 3.36758 3.42763 3.54429 4.24547 4.41208 4.59976 4.65285 4.86420 4.90940 5.19511 5.29327 5.30078 5.37522 5.40904 5.53455 5.55380 5.60692 5.63741 5.73994 5.82439 5.86969 5.92123 5.93905 5.99540 6.00548 6.14106 6.19999 6.25009 6.32869 6.42337 6.43781 6.55954 6.62452 6.91273 6.97444 7.26345 7.27962 7.63332 7.80427 8.04843 8.19837 8.50439 8.72479 9.01849 9.57914 11.04253 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.007931 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.535896 B = 3529.440227 C = 5518.913429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.095 4.095 4 H 0.089 0.911 5 C -0.154 4.154 6 C 0.524 3.476 7 O -0.535 6.535 8 N -0.600 5.600 9 C 0.292 3.708 10 N -0.545 5.545 11 C 0.195 3.805 12 C -0.504 4.504 13 H 0.064 0.936 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.100 3.900 21 C -0.132 4.132 22 C -0.190 4.190 23 C -0.184 4.184 24 C 0.102 3.898 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.048 0.952 34 H -0.011 1.011 35 H 0.031 0.969 36 H 0.260 0.740 37 H 0.092 0.908 38 H 0.021 0.979 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 11.015 -0.267 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.114 4.114 4 H 0.108 0.892 5 C -0.194 4.194 6 C 0.311 3.689 7 O -0.412 6.412 8 N -0.334 5.334 9 C 0.080 3.920 10 N -0.271 5.271 11 C 0.071 3.929 12 C -0.542 4.542 13 H 0.082 0.918 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.028 4.028 21 C -0.151 4.151 22 C -0.227 4.227 23 C -0.222 4.222 24 C -0.022 4.022 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.007 0.993 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.039 0.961 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.104 10.877 0.421 12.022 hybrid contribution 0.695 -0.929 -0.236 1.184 sum -4.408 9.948 0.185 10.882 Atomic orbital electron populations 1.21783 0.96007 1.01657 1.01258 1.21535 0.95473 0.94862 1.03793 1.22189 0.94520 0.97372 0.97316 0.89238 1.22472 0.98420 1.02242 0.96309 1.20680 0.85130 0.75738 0.87326 1.90657 1.84292 1.52671 1.13537 1.48330 1.11350 1.66274 1.07477 1.21677 0.81589 0.92454 0.96280 1.61718 1.50035 1.02933 1.12387 1.19777 0.94530 0.89513 0.89109 1.21200 1.44844 0.90031 0.98171 0.91810 1.24952 0.95398 0.99236 0.94851 1.69955 1.47634 1.29988 1.06251 0.86498 0.77714 0.84263 0.79332 1.19632 1.21055 1.21142 1.21488 0.91231 1.00944 0.89155 1.22494 0.99059 0.99025 0.94501 1.22993 1.02510 0.92237 1.04943 1.22891 1.02628 1.00915 0.95738 1.22240 0.94944 1.02346 0.82634 0.93059 0.92673 0.92790 0.91202 0.90623 0.88284 0.88697 0.90205 0.93376 0.99309 0.95054 0.93055 0.88960 0.96109 0.86761 0.89592 0.89507 0.89400 0.89199 0.91699 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.75 37.16 0.36 -1.33 16 2 C -0.12 -1.63 5.40 -26.73 -0.14 -1.77 16 3 C -0.10 -1.14 3.18 -88.90 -0.28 -1.42 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.15 -1.99 6.27 -26.74 -0.17 -2.16 16 6 C 0.52 9.22 8.02 -10.86 -0.09 9.13 16 7 O -0.53 -11.29 17.73 5.56 0.10 -11.20 16 8 N -0.60 -10.21 3.17 -175.79 -0.56 -10.77 16 9 C 0.29 5.37 5.51 -63.30 -0.35 5.02 16 10 N -0.54 -11.69 4.55 -239.97 -1.09 -12.78 16 11 C 0.20 4.87 4.55 -4.97 -0.02 4.85 16 12 C -0.50 -13.83 8.29 -34.44 -0.29 -14.12 16 13 H 0.06 1.79 7.25 -52.49 -0.38 1.41 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.10 1.99 5.04 -3.83 -0.02 1.97 16 21 C -0.13 -2.35 5.02 -90.62 -0.45 -2.81 16 22 C -0.19 -2.85 9.85 -26.69 -0.26 -3.11 16 23 C -0.18 -2.76 10.25 -26.69 -0.27 -3.03 16 24 C 0.10 1.42 6.83 -3.03 -0.02 1.40 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.58 6.50 -51.93 -0.34 0.25 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.10 1.26 6.27 -51.93 -0.33 0.93 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.45 6.74 -51.94 -0.35 1.10 16 33 H 0.05 0.85 7.83 -51.93 -0.41 0.44 16 34 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 35 H 0.03 0.82 6.68 -51.93 -0.35 0.47 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 2.01 6.59 -51.93 -0.34 1.67 16 38 H 0.02 0.39 7.79 -51.93 -0.40 -0.01 16 39 H 0.11 2.34 8.14 -51.93 -0.42 1.92 16 40 H 0.09 1.21 8.03 -51.92 -0.42 0.79 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.36 6.60 -51.93 -0.34 1.02 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -30.75 359.29 -10.39 -41.14 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.86 Total: 2.66 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.10 Total: -5.89 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.91 Total: -48.60 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.10 Total: -11.20 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.75 -10.39 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119294498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.131 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds