Wall clock time and date at job start Tue Mar 31 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46897 * 2 1 4 4 H 1.08999 * 110.89034 * 302.64405 * 3 2 1 5 5 C 1.54624 * 110.97140 * 66.45733 * 3 2 1 6 6 C 1.51288 * 104.19836 * 93.31803 * 5 3 2 7 7 O 1.21276 * 124.94379 * 196.23298 * 6 5 3 8 8 N 1.34418 * 110.10840 * 16.25450 * 6 5 3 9 9 C 1.46510 * 124.34449 * 180.40716 * 8 6 5 10 10 N 1.46904 * 109.46724 * 80.29669 * 9 8 6 11 11 C 1.46904 * 111.00011 * 84.86233 * 10 9 8 12 12 C 1.50704 * 109.46893 * 189.99614 * 11 10 9 13 13 H 1.07999 * 120.00062 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99568 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00559 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99761 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47099 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47191 * 119.99877 * 16 14 12 19 19 H 1.48500 * 109.47029 * 240.00319 * 16 14 12 20 20 C 1.46896 * 110.99741 * 208.81283 * 10 9 8 21 21 C 1.52996 * 109.47301 * 71.68043 * 20 10 9 22 22 C 1.52999 * 117.50413 * 244.04493 * 21 20 10 23 23 C 1.53001 * 117.50136 * 175.38228 * 21 20 10 24 24 C 1.46757 * 111.30638 * 0.67351 * 8 6 5 25 25 H 1.08994 * 109.47421 * 59.99711 * 1 2 3 26 26 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46957 * 299.99542 * 1 2 3 28 28 H 1.08999 * 109.46470 * 240.00316 * 2 1 3 29 29 H 1.08994 * 109.47421 * 120.00289 * 2 1 3 30 30 H 1.09005 * 110.48507 * 334.64357 * 5 3 2 31 31 H 1.08996 * 110.60356 * 212.05057 * 5 3 2 32 32 H 1.08989 * 109.46949 * 320.29721 * 9 8 6 33 33 H 1.08999 * 109.46633 * 200.29142 * 9 8 6 34 34 H 1.08999 * 109.47079 * 69.99640 * 11 10 9 35 35 H 1.09001 * 109.46942 * 309.99557 * 11 10 9 36 36 H 0.96999 * 120.00095 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.47270 * 191.68316 * 20 10 9 38 38 H 1.09004 * 109.47119 * 311.68323 * 20 10 9 39 39 H 1.09004 * 115.54942 * 29.71187 * 21 20 10 40 40 H 1.09008 * 117.49747 * 359.97438 * 22 21 20 41 41 H 1.08994 * 117.50011 * 145.01792 * 22 21 20 42 42 H 1.09004 * 117.49662 * 214.98315 * 23 21 20 43 43 H 1.08995 * 117.49784 * 359.97438 * 23 21 20 44 44 H 1.09000 * 110.24827 * 101.71714 * 24 8 6 45 45 H 1.09003 * 110.24795 * 223.71704 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6516 1.9920 -0.8575 5 6 1.6807 2.1564 1.3236 6 6 2.8979 1.9511 2.1983 7 8 2.9239 2.1082 3.4005 8 7 3.9465 1.5695 1.4488 9 6 5.2800 1.2775 1.9807 10 7 5.2961 -0.0791 2.5442 11 6 5.5588 -1.0794 1.5009 12 6 5.3267 -2.4600 2.0588 13 1 5.0156 -2.5821 3.0858 14 6 5.5115 -3.5671 1.2582 15 7 5.8907 -3.4184 0.0077 16 14 5.2231 -5.2783 1.9495 17 1 4.8059 -5.1741 3.3709 18 1 4.1565 -5.9546 1.1683 19 1 6.4784 -6.0666 1.8592 20 6 6.2758 -0.1850 3.6336 21 6 5.7628 0.5774 4.8568 22 6 6.5693 1.7914 5.3221 23 6 6.5937 0.4971 6.1390 24 6 3.5856 1.4891 0.0286 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.8025 1.6978 1.7783 31 1 1.5093 3.2190 1.1520 32 1 5.5257 1.9979 2.7608 33 1 6.0143 1.3463 1.1781 34 1 6.5922 -0.9920 1.1656 35 1 4.8880 -0.9105 0.6585 36 1 6.0211 -4.1974 -0.5555 37 1 6.4188 -1.2340 3.8929 38 1 7.2254 0.2423 3.3111 39 1 4.6788 0.6233 4.9616 40 1 7.4658 2.0467 4.7570 41 1 6.0161 2.6357 5.7334 42 1 6.0563 0.4904 7.0874 43 1 7.5056 -0.0993 6.1112 44 1 3.9491 2.3683 -0.5034 45 1 3.9974 0.5823 -0.4145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119294498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:51 Heat of formation + Delta-G solvation = -29.450678 kcal Electronic energy + Delta-G solvation = -23322.968255 eV Core-core repulsion = 20147.168541 eV Total energy + Delta-G solvation = -3175.799714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41397 -39.16938 -37.71652 -36.96559 -35.05322 -34.18601 -31.13215 -29.42652 -28.49987 -27.69840 -25.59488 -24.22896 -23.24714 -22.82165 -21.26438 -21.23867 -20.23791 -18.62336 -17.64621 -17.32608 -16.85867 -16.64380 -16.30112 -15.60414 -15.42704 -15.30697 -14.93145 -14.69006 -14.55908 -14.28679 -14.13562 -13.65751 -13.40564 -13.18585 -13.02630 -12.96224 -12.76204 -12.65021 -12.54462 -12.35650 -12.17928 -12.00309 -11.82123 -11.56946 -11.53887 -11.35986 -11.11635 -10.82574 -10.62810 -10.60455 -9.69147 -9.04972 -8.21839 -6.29887 1.35978 1.37719 1.50409 1.70340 2.23988 2.37985 2.92776 3.10079 3.29282 3.51367 3.53613 3.85989 3.95775 4.04427 4.06804 4.15698 4.16958 4.38038 4.42225 4.48847 4.57850 4.64166 4.71496 4.74773 4.76258 4.80098 4.85961 4.88591 4.92790 5.01105 5.14172 5.15837 5.25397 5.26294 5.28922 5.41422 5.43169 5.53003 5.59322 5.68926 6.04594 6.23367 6.45818 6.60452 6.85084 7.34540 7.38884 8.88246 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010104 B = 0.007931 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.535896 B = 3529.440227 C = 5518.913429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.082 4.082 4 H 0.136 0.864 5 C -0.141 4.141 6 C 0.509 3.491 7 O -0.579 6.579 8 N -0.606 5.606 9 C 0.293 3.707 10 N -0.557 5.557 11 C 0.217 3.783 12 C -0.520 4.520 13 H 0.050 0.950 14 C 0.011 3.989 15 N -0.926 5.926 16 Si 0.958 3.042 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.106 3.894 21 C -0.155 4.155 22 C -0.170 4.170 23 C -0.167 4.167 24 C 0.097 3.903 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.055 0.945 34 H -0.036 1.036 35 H 0.014 0.986 36 H 0.264 0.736 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 12.266 -0.608 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.100 4.100 4 H 0.153 0.847 5 C -0.181 4.181 6 C 0.298 3.702 7 O -0.459 6.459 8 N -0.340 5.340 9 C 0.081 3.919 10 N -0.283 5.283 11 C 0.092 3.908 12 C -0.559 4.559 13 H 0.069 0.931 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.783 3.217 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.201 1.201 20 C -0.022 4.022 21 C -0.174 4.174 22 C -0.206 4.206 23 C -0.205 4.205 24 C -0.026 4.026 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.102 0.898 33 H 0.073 0.927 34 H -0.018 1.018 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.883 12.139 0.058 13.490 hybrid contribution 0.962 -1.305 -0.135 1.627 sum -4.921 10.834 -0.076 11.900 Atomic orbital electron populations 1.21746 0.93736 1.01773 1.02868 1.21488 0.97448 0.95757 1.00924 1.22238 0.92749 0.96413 0.98628 0.84652 1.22491 0.95816 1.04566 0.95211 1.21595 0.86529 0.74808 0.87279 1.90623 1.85158 1.54582 1.15564 1.48493 1.10824 1.65664 1.08985 1.21637 0.83001 0.90676 0.96579 1.61689 1.50814 1.03891 1.11884 1.19363 0.92320 0.89794 0.89372 1.21398 1.45110 0.91645 0.97706 0.93132 1.25716 0.94979 1.02941 0.95129 1.70048 1.48109 1.31211 1.07227 0.85506 0.77972 0.79662 0.78537 1.19630 1.20303 1.20138 1.21385 0.91462 0.99761 0.89578 1.22144 0.97698 1.02134 0.95410 1.23045 1.01920 0.91799 1.03875 1.23004 1.02060 1.00611 0.94810 1.22472 0.96642 1.02568 0.80880 0.90272 0.93453 0.92215 0.92032 0.95616 0.87970 0.85074 0.89807 0.92721 1.01817 0.96817 0.92692 0.91750 0.95166 0.89888 0.88248 0.88677 0.88001 0.88172 0.88167 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.75 71.98 0.70 -2.29 16 2 C -0.12 -3.21 5.40 30.59 0.17 -3.04 16 3 C -0.08 -1.77 3.18 -9.68 -0.03 -1.81 16 4 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 5 C -0.14 -3.31 6.27 30.59 0.19 -3.12 16 6 C 0.51 17.84 8.02 87.90 0.71 18.54 16 7 O -0.58 -24.97 17.73 -3.02 -0.05 -25.03 16 8 N -0.61 -20.81 3.17 -828.67 -2.63 -23.44 16 9 C 0.29 11.10 5.51 170.80 0.94 12.04 16 10 N -0.56 -25.10 4.55 -913.14 -4.16 -29.26 16 11 C 0.22 11.43 4.55 85.56 0.39 11.82 16 12 C -0.52 -29.81 8.29 25.60 0.21 -29.59 16 13 H 0.05 2.97 7.25 -2.91 -0.02 2.95 16 14 C 0.01 0.62 5.46 84.65 0.46 1.08 16 15 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 16 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 17 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 C 0.11 4.39 5.04 86.30 0.43 4.82 16 21 C -0.16 -5.62 5.02 -10.79 -0.05 -5.68 16 22 C -0.17 -4.86 9.85 30.62 0.30 -4.56 16 23 C -0.17 -4.82 10.25 30.62 0.31 -4.50 16 24 C 0.10 2.62 6.83 86.90 0.59 3.21 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.17 6.50 -2.39 -0.02 1.16 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 2.39 6.27 -2.38 -0.01 2.38 16 31 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.08 3.09 6.74 -2.39 -0.02 3.07 16 33 H 0.05 1.98 7.83 -2.39 -0.02 1.96 16 34 H -0.04 -2.02 8.12 -2.39 -0.02 -2.04 16 35 H 0.01 0.77 6.68 -2.39 -0.02 0.75 16 36 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 37 H 0.06 2.96 6.59 -2.39 -0.02 2.95 16 38 H 0.03 1.16 7.79 -2.39 -0.02 1.15 16 39 H 0.08 3.57 8.14 -2.38 -0.02 3.55 16 40 H 0.10 2.60 8.03 -2.38 -0.02 2.58 16 41 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.89 6.60 -2.39 -0.02 1.87 16 Total: -1.00 -70.41 359.29 1.74 -68.67 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.95 Total: 19.30 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.33 Total: -3.09 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -6.50 Total: -106.71 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.41 1.74 -68.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119294498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.218 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds