Wall clock time and date at job start Tue Mar 31 2020 01:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 C 1.53001 * 109.47554 * 120.00419 * 2 1 3 5 5 H 1.08996 * 112.73449 * 50.50326 * 4 2 1 6 6 C 1.53495 * 113.46616 * 279.68643 * 4 2 1 7 7 C 1.53753 * 83.25400 * 218.98120 * 6 4 2 8 8 N 1.47060 * 113.46785 * 181.24866 * 4 2 1 9 9 C 1.34783 * 136.05844 * 321.86244 * 8 4 2 10 10 O 1.21588 * 119.99868 * 0.02562 * 9 8 4 11 11 N 1.34773 * 119.99666 * 180.02562 * 9 8 4 12 12 C 1.46506 * 119.99648 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.53603 * 323.83493 * 12 11 9 14 14 C 1.54258 * 110.48861 * 86.45355 * 12 11 9 15 15 C 1.53877 * 106.59881 * 142.29155 * 14 12 11 16 16 C 1.54260 * 106.60012 * 359.97438 * 15 14 12 17 17 H 1.09001 * 110.48456 * 95.06945 * 16 15 14 18 18 C 1.50694 * 110.48696 * 217.71565 * 16 15 14 19 19 H 1.08003 * 119.99860 * 118.55458 * 18 16 15 20 20 C 1.37870 * 120.00100 * 298.54292 * 18 16 15 21 21 N 1.31519 * 120.00110 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00158 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47127 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47204 * 120.00477 * 22 20 18 25 25 H 1.48500 * 109.47397 * 240.00548 * 22 20 18 26 26 C 1.54893 * 110.48428 * 201.22922 * 12 11 9 27 27 H 1.09001 * 109.47387 * 59.99320 * 1 2 3 28 28 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46553 * 299.99124 * 1 2 3 30 30 H 1.08998 * 109.46718 * 240.00863 * 2 1 3 31 31 H 1.09001 * 109.47177 * 172.97617 * 3 2 1 32 32 H 1.08997 * 109.47861 * 292.98243 * 3 2 1 33 33 H 1.09000 * 109.46891 * 52.98322 * 3 2 1 34 34 H 1.09000 * 114.20571 * 332.73456 * 6 4 2 35 35 H 1.08997 * 114.20440 * 105.36727 * 6 4 2 36 36 H 1.09003 * 113.46884 * 271.50228 * 7 6 4 37 37 H 1.09004 * 113.55444 * 140.99142 * 7 6 4 38 38 H 0.97000 * 120.00508 * 0.02562 * 11 9 8 39 39 H 1.09000 * 110.03343 * 22.99837 * 14 12 11 40 40 H 1.09007 * 110.07326 * 261.59397 * 14 12 11 41 41 H 1.09000 * 110.03107 * 119.28480 * 15 14 12 42 42 H 1.09003 * 110.02657 * 240.70942 * 15 14 12 43 43 H 0.97002 * 119.99945 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.75502 * 321.68686 * 26 12 11 45 45 H 1.08996 * 110.75603 * 84.87465 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5778 -1.6983 1.3898 6 6 2.0206 0.1529 2.5106 7 6 3.3535 -0.5556 2.8026 8 7 3.5069 -0.7471 1.3526 9 6 4.5378 -0.8896 0.4962 10 8 4.3252 -1.0423 -0.6912 11 7 5.8044 -0.8628 0.9560 12 6 6.9251 -1.0172 0.0251 13 1 6.6710 -1.7233 -0.7654 14 6 7.3194 0.3476 -0.5762 15 6 8.8538 0.3503 -0.6916 16 6 9.3384 -1.0126 -0.1557 17 1 9.4741 -1.7184 -0.9752 18 6 10.6206 -0.8491 0.6190 19 1 10.6565 -1.1127 1.6657 20 6 11.7480 -0.3631 -0.0085 21 7 11.7043 -0.0418 -1.2831 22 14 13.3376 -0.1611 0.9516 23 1 13.1249 -0.5905 2.3571 24 1 14.3984 -0.9969 0.3342 25 1 13.7532 1.2644 0.9266 26 6 8.1960 -1.4816 0.7789 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 3.1228 1.4451 0.1257 32 1 1.7829 1.9189 -0.9460 33 1 1.5778 1.9912 0.8206 34 1 2.1121 1.2214 2.3154 35 1 1.2212 -0.0903 3.2106 36 1 3.2374 -1.4888 3.3538 37 1 4.1092 0.0994 3.2363 38 1 5.9741 -0.7414 1.9033 39 1 6.9928 1.1535 0.0809 40 1 6.8706 0.4655 -1.5626 41 1 9.1497 0.4687 -1.7339 42 1 9.2719 1.1577 -0.0903 43 1 12.4975 0.2997 -1.7247 44 1 8.2681 -0.9942 1.7512 45 1 8.2044 -2.5658 0.8903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331745334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:23 Heat of formation + Delta-G solvation = -12.805719 kcal Electronic energy + Delta-G solvation = -22632.462633 eV Core-core repulsion = 19457.384699 eV Total energy + Delta-G solvation = -3175.077934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.78865 -38.59696 -36.74826 -34.60571 -33.48348 -31.92564 -29.50408 -28.08257 -27.31098 -26.75778 -25.77164 -23.78767 -22.51755 -20.84869 -19.87062 -19.24249 -18.69841 -17.49472 -16.57367 -16.21985 -15.86371 -14.82957 -14.81964 -14.58121 -14.27119 -14.00975 -13.70273 -13.23002 -12.98980 -12.54418 -12.50597 -12.44069 -12.30582 -11.79037 -11.70727 -11.54947 -11.17132 -11.09747 -10.96822 -10.92034 -10.80986 -10.53283 -10.37830 -10.23951 -9.93401 -9.65947 -9.50411 -9.20106 -8.78054 -8.69591 -8.37296 -8.31865 -5.98978 -4.02298 2.61487 3.30214 3.38464 3.41535 3.48262 4.05281 4.22204 4.45311 4.67348 4.80824 4.82735 4.96628 5.05453 5.26429 5.28688 5.33184 5.42711 5.45637 5.54171 5.57189 5.70308 5.72781 5.77090 5.79429 5.91898 6.00009 6.04370 6.27544 6.31560 6.38652 6.44793 6.61306 6.71833 6.79146 6.95375 7.05800 7.30350 7.36382 7.48519 7.75449 7.91991 8.04077 8.29649 8.46197 8.91782 9.00447 9.61662 11.10526 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037921 B = 0.003349 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.197446 B = 8359.673307 C = 8649.381847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.139 4.139 4 C 0.159 3.841 5 H 0.085 0.915 6 C -0.157 4.157 7 C 0.098 3.902 8 N -0.666 5.666 9 C 0.731 3.269 10 O -0.588 6.588 11 N -0.732 5.732 12 C 0.155 3.845 13 H 0.083 0.917 14 C -0.134 4.134 15 C -0.093 4.093 16 C 0.051 3.949 17 H 0.031 0.969 18 C -0.513 4.513 19 H 0.056 0.944 20 C 0.062 3.938 21 N -0.887 5.887 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.119 4.119 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.391 0.609 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.127 1.038 8.393 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.196 4.196 4 C 0.055 3.945 5 H 0.103 0.897 6 C -0.195 4.195 7 C -0.026 4.026 8 N -0.406 5.406 9 C 0.435 3.565 10 O -0.466 6.466 11 N -0.385 5.385 12 C 0.051 3.949 13 H 0.101 0.899 14 C -0.173 4.173 15 C -0.132 4.132 16 C 0.032 3.968 17 H 0.049 0.951 18 C -0.552 4.552 19 H 0.074 0.926 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.157 4.157 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.224 0.776 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.934 0.959 7.177 22.151 hybrid contribution 1.098 0.173 0.935 1.452 sum -19.836 1.132 8.112 21.461 Atomic orbital electron populations 1.21762 0.94755 1.01630 1.01830 1.21261 0.95323 0.97010 0.98710 1.21798 1.01603 0.95237 1.00988 1.22527 0.79140 0.97937 0.94900 0.89684 1.23682 0.97491 1.00891 0.97387 1.22895 0.97101 0.99502 0.83072 1.48867 1.05862 1.78088 1.07832 1.15374 0.79705 0.77428 0.84009 1.90895 1.83772 1.57818 1.14068 1.45395 1.04063 1.77828 1.11223 1.21948 0.83877 0.97679 0.91371 0.89912 1.22643 0.99243 0.95937 0.99479 1.22045 0.89515 1.00422 1.01228 1.19394 0.91201 0.92699 0.93472 0.95103 1.21152 0.94632 1.43143 0.96253 0.92617 1.24988 0.98700 0.95475 0.94858 1.69992 1.29013 1.43997 1.09574 0.86589 0.83833 0.77661 0.80208 1.19850 1.21094 1.21117 1.22856 0.94082 0.99238 0.99522 0.92477 0.92753 0.92651 0.89512 0.92397 0.93017 0.92857 0.88089 0.89634 0.90251 0.90711 0.77600 0.93280 0.93071 0.92520 0.92986 0.93132 0.92165 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.16 37.16 0.34 -0.77 16 2 C -0.10 -1.11 2.69 -90.62 -0.24 -1.36 16 3 C -0.14 -1.52 8.17 37.16 0.30 -1.22 16 4 C 0.16 1.58 3.82 -72.42 -0.28 1.30 16 5 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.16 -1.10 7.68 -26.08 -0.20 -1.30 16 7 C 0.10 0.82 8.29 -8.39 -0.07 0.75 16 8 N -0.67 -8.36 2.98 -183.09 -0.55 -8.90 16 9 C 0.73 12.35 8.20 -86.92 -0.71 11.64 16 10 O -0.59 -12.19 15.69 5.29 0.08 -12.11 16 11 N -0.73 -11.92 5.12 -57.05 -0.29 -12.21 16 12 C 0.16 2.98 3.16 -66.27 -0.21 2.77 16 13 H 0.08 1.72 7.67 -51.93 -0.40 1.32 16 14 C -0.13 -2.74 6.53 -25.62 -0.17 -2.91 16 15 C -0.09 -2.22 5.40 -25.61 -0.14 -2.36 16 16 C 0.05 1.27 2.79 -90.13 -0.25 1.02 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.51 -13.94 8.40 -34.45 -0.29 -14.23 16 19 H 0.06 1.49 7.77 -52.48 -0.41 1.08 16 20 C 0.06 1.70 5.33 -17.82 -0.09 1.61 16 21 N -0.89 -25.60 12.35 55.43 0.68 -24.91 16 22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C -0.12 -2.40 5.88 -24.75 -0.15 -2.55 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 1.22 7.34 -51.93 -0.38 0.84 16 31 H 0.06 0.79 7.13 -51.93 -0.37 0.42 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.47 6.54 -51.93 -0.34 0.13 16 34 H 0.10 0.74 5.73 -51.93 -0.30 0.45 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.39 5.42 8.25 -40.82 -0.34 5.08 16 39 H 0.05 0.95 8.04 -51.93 -0.42 0.54 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.45 7.94 -51.93 -0.41 1.03 16 42 H 0.05 1.30 7.83 -51.93 -0.41 0.90 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -31.46 352.55 -9.90 -41.36 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.97 Total: 2.90 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.16 Total: -7.61 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.15 Total: -46.03 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.46 -9.90 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331745334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.551 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds