Wall clock time and date at job start Tue Mar 31 2020 01:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 C 1.53001 * 109.47554 * 120.00419 * 2 1 3 5 5 H 1.08996 * 112.73449 * 50.50326 * 4 2 1 6 6 C 1.53495 * 113.46616 * 279.68643 * 4 2 1 7 7 C 1.53753 * 83.25400 * 218.98120 * 6 4 2 8 8 N 1.47060 * 113.46785 * 181.24866 * 4 2 1 9 9 C 1.34783 * 136.05844 * 321.86244 * 8 4 2 10 10 O 1.21588 * 119.99868 * 0.02562 * 9 8 4 11 11 N 1.34773 * 119.99666 * 180.02562 * 9 8 4 12 12 C 1.46506 * 119.99648 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.53603 * 323.83493 * 12 11 9 14 14 C 1.54258 * 110.48861 * 86.45355 * 12 11 9 15 15 C 1.53877 * 106.59881 * 142.29155 * 14 12 11 16 16 C 1.54260 * 106.60012 * 359.97438 * 15 14 12 17 17 H 1.09001 * 110.48456 * 95.06945 * 16 15 14 18 18 C 1.50694 * 110.48696 * 217.71565 * 16 15 14 19 19 H 1.08003 * 119.99860 * 118.55458 * 18 16 15 20 20 C 1.37870 * 120.00100 * 298.54292 * 18 16 15 21 21 N 1.31519 * 120.00110 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00158 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47127 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47204 * 120.00477 * 22 20 18 25 25 H 1.48500 * 109.47397 * 240.00548 * 22 20 18 26 26 C 1.54893 * 110.48428 * 201.22922 * 12 11 9 27 27 H 1.09001 * 109.47387 * 59.99320 * 1 2 3 28 28 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46553 * 299.99124 * 1 2 3 30 30 H 1.08998 * 109.46718 * 240.00863 * 2 1 3 31 31 H 1.09001 * 109.47177 * 172.97617 * 3 2 1 32 32 H 1.08997 * 109.47861 * 292.98243 * 3 2 1 33 33 H 1.09000 * 109.46891 * 52.98322 * 3 2 1 34 34 H 1.09000 * 114.20571 * 332.73456 * 6 4 2 35 35 H 1.08997 * 114.20440 * 105.36727 * 6 4 2 36 36 H 1.09003 * 113.46884 * 271.50228 * 7 6 4 37 37 H 1.09004 * 113.55444 * 140.99142 * 7 6 4 38 38 H 0.97000 * 120.00508 * 0.02562 * 11 9 8 39 39 H 1.09000 * 110.03343 * 22.99837 * 14 12 11 40 40 H 1.09007 * 110.07326 * 261.59397 * 14 12 11 41 41 H 1.09000 * 110.03107 * 119.28480 * 15 14 12 42 42 H 1.09003 * 110.02657 * 240.70942 * 15 14 12 43 43 H 0.97002 * 119.99945 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.75502 * 321.68686 * 26 12 11 45 45 H 1.08996 * 110.75603 * 84.87465 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5778 -1.6983 1.3898 6 6 2.0206 0.1529 2.5106 7 6 3.3535 -0.5556 2.8026 8 7 3.5069 -0.7471 1.3526 9 6 4.5378 -0.8896 0.4962 10 8 4.3252 -1.0423 -0.6912 11 7 5.8044 -0.8628 0.9560 12 6 6.9251 -1.0172 0.0251 13 1 6.6710 -1.7233 -0.7654 14 6 7.3194 0.3476 -0.5762 15 6 8.8538 0.3503 -0.6916 16 6 9.3384 -1.0126 -0.1557 17 1 9.4741 -1.7184 -0.9752 18 6 10.6206 -0.8491 0.6190 19 1 10.6565 -1.1127 1.6657 20 6 11.7480 -0.3631 -0.0085 21 7 11.7043 -0.0418 -1.2831 22 14 13.3376 -0.1611 0.9516 23 1 13.1249 -0.5905 2.3571 24 1 14.3984 -0.9969 0.3342 25 1 13.7532 1.2644 0.9266 26 6 8.1960 -1.4816 0.7789 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 3.1228 1.4451 0.1257 32 1 1.7829 1.9189 -0.9460 33 1 1.5778 1.9912 0.8206 34 1 2.1121 1.2214 2.3154 35 1 1.2212 -0.0903 3.2106 36 1 3.2374 -1.4888 3.3538 37 1 4.1092 0.0994 3.2363 38 1 5.9741 -0.7414 1.9033 39 1 6.9928 1.1535 0.0809 40 1 6.8706 0.4655 -1.5626 41 1 9.1497 0.4687 -1.7339 42 1 9.2719 1.1577 -0.0903 43 1 12.4975 0.2997 -1.7247 44 1 8.2681 -0.9942 1.7512 45 1 8.2044 -2.5658 0.8903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331745334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:21 Heat of formation + Delta-G solvation = -31.525961 kcal Electronic energy + Delta-G solvation = -22633.274404 eV Core-core repulsion = 19457.384699 eV Total energy + Delta-G solvation = -3175.889705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75086 -39.93146 -38.35444 -35.55659 -35.09208 -33.73796 -30.63297 -29.91567 -28.34219 -28.07142 -26.59929 -25.68853 -23.41666 -21.84159 -21.51315 -20.86756 -20.03588 -18.48378 -18.41460 -17.35094 -17.01322 -16.57553 -16.35648 -15.90300 -15.69404 -15.21620 -14.59790 -14.43689 -14.17220 -14.01676 -13.75644 -13.65813 -13.25636 -13.10895 -13.07174 -12.80642 -12.56728 -12.48567 -12.36231 -12.23849 -12.10155 -11.89392 -11.73608 -11.70810 -11.44140 -11.22828 -11.07513 -10.87320 -10.76092 -10.48868 -10.11630 -9.43726 -8.10470 -6.21093 1.42064 1.43709 1.53912 1.55888 2.21674 2.44820 3.00361 3.20639 3.50104 3.87707 3.91077 4.01599 4.04379 4.09795 4.17997 4.25429 4.42090 4.58331 4.63830 4.67272 4.70325 4.75554 4.79357 4.84232 4.86468 4.99584 5.02053 5.03452 5.05777 5.10893 5.11830 5.28264 5.31178 5.34830 5.40960 5.47072 5.53416 5.66091 5.67901 5.91204 5.96551 6.34375 6.37471 6.90169 7.13524 7.46801 7.66759 8.98894 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037921 B = 0.003349 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.197446 B = 8359.673307 C = 8649.381847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.147 3.853 5 H 0.098 0.902 6 C -0.134 4.134 7 C 0.094 3.906 8 N -0.672 5.672 9 C 0.724 3.276 10 O -0.637 6.637 11 N -0.724 5.724 12 C 0.171 3.829 13 H 0.063 0.937 14 C -0.121 4.121 15 C -0.081 4.081 16 C 0.040 3.960 17 H -0.002 1.002 18 C -0.527 4.527 19 H 0.061 0.939 20 C 0.008 3.992 21 N -0.922 5.922 22 Si 0.957 3.043 23 H -0.262 1.262 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.101 4.101 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.025 0.975 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.406 0.594 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.027 0.973 42 H 0.036 0.964 43 H 0.259 0.741 44 H 0.075 0.925 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.900 1.272 11.818 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 C -0.191 4.191 4 C 0.044 3.956 5 H 0.116 0.884 6 C -0.171 4.171 7 C -0.027 4.027 8 N -0.411 5.411 9 C 0.428 3.572 10 O -0.519 6.519 11 N -0.378 5.378 12 C 0.065 3.935 13 H 0.081 0.919 14 C -0.160 4.160 15 C -0.120 4.120 16 C 0.021 3.979 17 H 0.016 0.984 18 C -0.565 4.565 19 H 0.079 0.921 20 C -0.191 4.191 21 N -0.561 5.561 22 Si 0.782 3.218 23 H -0.186 1.186 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.753 1.195 10.679 25.163 hybrid contribution 1.585 0.094 -0.151 1.595 sum -21.168 1.289 10.528 23.677 Atomic orbital electron populations 1.21704 0.92195 1.02425 1.02860 1.21223 0.97414 0.96288 0.97464 1.21760 0.99631 0.95939 1.01784 1.22908 0.77426 0.99369 0.95897 0.88391 1.23621 0.97721 1.00047 0.95733 1.23251 0.98061 1.01016 0.80417 1.49035 1.06076 1.76267 1.09707 1.15559 0.80412 0.77287 0.83974 1.90860 1.84582 1.59887 1.16546 1.45052 1.03370 1.78017 1.11370 1.21482 0.84609 0.96084 0.91315 0.91853 1.22489 0.96504 0.97441 0.99613 1.21814 0.91816 0.99462 0.98898 1.19383 0.92579 0.92467 0.93444 0.98424 1.21523 0.95626 1.42699 0.96641 0.92058 1.25828 1.02218 0.95290 0.95736 1.70137 1.29879 1.44925 1.11194 0.85525 0.79491 0.77495 0.79257 1.18555 1.20992 1.20875 1.22635 0.92395 0.99926 0.99001 0.92773 0.92104 0.90270 0.94027 0.95588 0.93765 0.89967 0.88222 0.85876 0.88028 0.89845 0.75857 0.91880 0.93921 0.95444 0.94529 0.93209 0.90655 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.16 71.98 0.66 -1.14 16 2 C -0.10 -2.16 2.69 -10.79 -0.03 -2.19 16 3 C -0.13 -2.84 8.17 71.98 0.59 -2.25 16 4 C 0.15 2.57 3.82 41.78 0.16 2.73 16 5 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 6 C -0.13 -1.30 7.68 31.01 0.24 -1.06 16 7 C 0.09 1.22 8.29 83.25 0.69 1.91 16 8 N -0.67 -15.77 2.98 -851.44 -2.54 -18.30 16 9 C 0.72 24.36 8.20 179.05 1.47 25.83 16 10 O -0.64 -27.43 15.69 -3.99 -0.06 -27.49 16 11 N -0.72 -22.96 5.12 -452.68 -2.32 -25.27 16 12 C 0.17 6.60 3.16 46.06 0.15 6.75 16 13 H 0.06 2.73 7.67 -2.39 -0.02 2.71 16 14 C -0.12 -5.07 6.53 31.32 0.20 -4.87 16 15 C -0.08 -4.01 5.40 31.32 0.17 -3.84 16 16 C 0.04 2.05 2.79 -10.47 -0.03 2.02 16 17 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 18 C -0.53 -28.77 8.40 25.60 0.22 -28.56 16 19 H 0.06 3.21 7.77 -2.91 -0.02 3.19 16 20 C 0.01 0.43 5.33 84.65 0.45 0.89 16 21 N -0.92 -54.68 12.35 21.45 0.26 -54.41 16 22 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 C -0.10 -4.06 5.88 31.88 0.19 -3.87 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.04 1.23 7.34 -2.39 -0.02 1.22 16 31 H 0.02 0.70 7.13 -2.39 -0.02 0.68 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.22 6.54 -2.39 -0.02 1.21 16 34 H 0.10 1.05 5.73 -2.39 -0.01 1.04 16 35 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.41 10.37 8.25 -92.71 -0.76 9.61 16 39 H 0.06 2.44 8.04 -2.39 -0.02 2.42 16 40 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.03 1.47 7.94 -2.39 -0.02 1.45 16 42 H 0.04 1.88 7.83 -2.39 -0.02 1.86 16 43 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.07 2.79 7.93 -2.39 -0.02 2.78 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -72.07 352.55 2.68 -69.39 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.19 Total: 18.13 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.12 Total: -7.66 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -4.59 Total: -97.99 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.06 Total: -27.49 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.07 2.68 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331745334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.863 kcal (2) G-P(sol) polarization free energy of solvation -72.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds