Wall clock time and date at job start Tue Mar 31 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47084 * 2 1 4 4 C 1.50708 * 109.46891 * 240.00139 * 2 1 3 5 5 H 1.08000 * 119.99942 * 239.99996 * 4 2 1 6 6 C 1.37871 * 120.00030 * 60.00134 * 4 2 1 7 7 N 1.31521 * 120.00051 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00127 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47422 * 59.99637 * 8 6 4 10 10 H 1.48501 * 109.47185 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46772 * 299.99666 * 8 6 4 12 12 C 1.52998 * 109.46931 * 120.00581 * 2 1 3 13 13 N 1.46502 * 109.47219 * 299.99353 * 12 2 1 14 14 C 1.34769 * 120.00267 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00157 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00035 * 180.02562 * 14 13 12 17 17 C 1.47486 * 125.59413 * 0.02562 * 16 14 13 18 18 C 1.54323 * 107.03754 * 181.00840 * 17 16 14 19 19 C 1.55153 * 103.10236 * 22.24109 * 18 17 16 20 20 H 1.09003 * 111.00505 * 82.48412 * 19 18 17 21 21 C 1.53000 * 111.00844 * 206.29737 * 19 18 17 22 22 C 1.52992 * 117.50096 * 248.74921 * 21 19 18 23 23 C 1.52993 * 117.50339 * 180.08531 * 21 19 18 24 24 C 1.47428 * 125.64860 * 180.02562 * 16 14 13 25 25 H 1.09003 * 109.47213 * 299.99686 * 1 2 3 26 26 H 1.08998 * 109.47180 * 60.00077 * 1 2 3 27 27 H 1.09006 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46959 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47594 * 300.00425 * 3 2 1 30 30 H 1.08999 * 109.47270 * 60.00329 * 3 2 1 31 31 H 0.96994 * 119.99698 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46967 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.47955 * 60.00077 * 12 2 1 34 34 H 0.97001 * 119.99327 * 0.02562 * 13 12 2 35 35 H 1.09000 * 110.02886 * 61.64190 * 17 16 14 36 36 H 1.09005 * 109.96368 * 300.33047 * 17 16 14 37 37 H 1.09002 * 110.72057 * 263.78860 * 18 17 16 38 38 H 1.09003 * 110.71837 * 140.69433 * 18 17 16 39 39 H 1.09001 * 115.54351 * 34.41382 * 21 19 18 40 40 H 1.09004 * 117.50053 * 359.97438 * 22 21 19 41 41 H 1.09003 * 117.49807 * 145.01509 * 22 21 19 42 42 H 1.09001 * 117.50189 * 214.97676 * 23 21 19 43 43 H 1.09005 * 117.49597 * 359.97438 * 23 21 19 44 44 H 1.09000 * 110.36462 * 37.07589 * 24 16 14 45 45 H 1.08998 * 110.36847 * 274.74797 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8268 -0.4198 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5774 -1.4791 3.7810 16 7 1.4281 0.1440 4.7699 17 6 0.5754 1.3474 4.7785 18 6 0.3404 1.7246 6.2563 19 6 1.5340 1.0524 6.9849 20 1 2.4279 1.6735 6.9256 21 6 1.1825 0.7402 8.4409 22 6 1.8976 1.5444 9.5284 23 6 2.2589 0.0745 9.3004 24 6 1.7072 -0.2491 6.1631 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7218 1.2489 33 1 1.6767 -1.7491 1.2492 34 1 0.9938 0.7577 2.3564 35 1 -0.3775 1.1331 4.2945 36 1 1.0798 2.1647 4.2630 37 1 -0.6066 1.3187 6.6121 38 1 0.3683 2.8063 6.3873 39 1 0.1459 0.4571 8.6238 40 1 2.6189 2.2956 9.2066 41 1 1.3316 1.7899 10.4270 42 1 1.9305 -0.6463 10.0492 43 1 3.2175 -0.1415 8.8285 44 1 2.7271 -0.6227 6.2548 45 1 0.9944 -1.0043 6.4943 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331812146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:50 Heat of formation + Delta-G solvation = -13.678560 kcal Electronic energy + Delta-G solvation = -22419.998447 eV Core-core repulsion = 19244.882664 eV Total energy + Delta-G solvation = -3175.115783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07633 -38.43868 -36.59684 -35.93294 -33.23006 -31.46117 -30.45007 -28.95770 -25.69659 -25.66799 -25.06199 -23.46203 -22.55740 -22.14275 -20.25873 -19.59927 -18.76354 -17.90196 -16.28978 -15.86006 -15.77784 -15.23520 -14.73548 -14.71414 -14.11271 -13.69710 -13.41531 -13.29201 -13.01894 -12.68658 -12.50657 -12.15986 -12.04595 -11.88781 -11.80398 -11.42262 -11.34297 -11.16119 -10.91935 -10.82005 -10.70619 -10.46380 -10.35123 -10.18413 -10.15369 -9.72387 -9.59934 -9.27710 -8.77054 -8.61374 -8.37218 -8.07239 -5.99649 -4.09523 2.95801 3.32121 3.36040 3.40233 3.45502 3.66319 4.24680 4.34426 4.40852 4.47969 4.61436 4.69823 4.92012 4.94258 5.14574 5.25821 5.27018 5.32236 5.36897 5.55650 5.62479 5.65514 5.77819 5.82271 5.84958 5.92887 6.11638 6.19744 6.40204 6.43505 6.54527 6.83708 6.85677 6.96882 7.06208 7.14690 7.38081 7.47132 7.58726 7.72213 8.03832 8.15204 8.40949 8.48576 8.90170 9.08994 9.56034 11.01840 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044818 B = 0.003183 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.604373 B = 8793.892238 C = 9135.175422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.644 5.644 17 C 0.098 3.902 18 C -0.121 4.121 19 C -0.072 4.072 20 H 0.084 0.916 21 C -0.141 4.141 22 C -0.178 4.178 23 C -0.180 4.180 24 C 0.136 3.864 25 H 0.005 0.995 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.260 0.740 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.393 0.607 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 4.790 20.175 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.385 5.385 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.384 5.384 17 C -0.025 4.025 18 C -0.158 4.158 19 C -0.092 4.092 20 H 0.103 0.897 21 C -0.160 4.160 22 C -0.215 4.215 23 C -0.217 4.217 24 C 0.013 3.987 25 H 0.024 0.976 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.027 4.115 19.964 20.485 hybrid contribution -0.006 -0.032 -0.883 0.883 sum -2.033 4.083 19.082 19.619 Atomic orbital electron populations 1.21818 0.97805 0.99159 0.99936 1.18352 0.92780 0.92759 0.90520 1.21813 0.98577 0.98376 0.99932 1.20958 1.31459 1.12092 0.89879 0.92446 1.24876 0.94876 0.94933 0.98821 1.69799 1.36685 1.22799 1.23283 0.86625 0.79236 0.79794 0.82152 1.20278 1.21352 1.20286 1.21594 0.97882 0.95440 0.82404 1.45509 1.55539 1.33035 1.04397 1.15601 0.80270 0.82489 0.79931 1.90879 1.43428 1.27748 1.85645 1.47679 1.54956 1.30631 1.05178 1.22062 0.94870 0.87966 0.97606 1.22627 0.98503 1.01219 0.93490 1.21952 0.98718 0.96612 0.91882 0.89733 1.22164 0.97761 1.05131 0.90894 1.23003 1.03669 0.94683 1.00190 1.22970 1.00153 0.95555 1.02977 1.21925 1.01657 0.95745 0.79413 0.97644 0.89627 0.95445 0.95455 0.89633 0.97648 0.92985 0.92978 0.92973 0.77162 0.91511 0.91595 0.90438 0.90034 0.87507 0.88766 0.88860 0.88749 0.88568 0.90692 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.27 16 3 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 4 C -0.51 -13.45 8.01 -34.44 -0.28 -13.73 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.83 9.35 55.43 0.52 -23.31 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.15 3.34 4.50 -4.04 -0.02 3.33 16 13 N -0.73 -14.07 4.92 -65.23 -0.32 -14.39 16 14 C 0.72 13.88 8.49 -86.92 -0.74 13.15 16 15 O -0.60 -13.87 16.60 5.29 0.09 -13.78 16 16 N -0.64 -9.57 3.34 -175.87 -0.59 -10.16 16 17 C 0.10 1.10 6.18 -2.81 -0.02 1.08 16 18 C -0.12 -0.99 6.41 -24.90 -0.16 -1.15 16 19 C -0.07 -0.65 3.16 -88.48 -0.28 -0.93 16 20 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 21 C -0.14 -1.05 5.15 -90.63 -0.47 -1.52 16 22 C -0.18 -1.19 10.20 -26.70 -0.27 -1.46 16 23 C -0.18 -1.31 10.14 -26.70 -0.27 -1.58 16 24 C 0.14 1.68 6.28 -2.53 -0.02 1.66 16 25 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 26 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 30 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 6.89 5.15 -40.82 -0.21 6.68 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.58 7.94 -51.93 -0.41 0.16 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.74 8.01 -51.93 -0.42 0.33 16 40 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 45 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -29.79 352.03 -9.92 -39.72 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.82 Total: 4.28 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.08 Total: -3.58 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.39 Total: -47.86 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.79 -9.92 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331812146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.039 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds