Wall clock time and date at job start Tue Mar 31 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47084 * 2 1 4 4 C 1.50708 * 109.46891 * 240.00139 * 2 1 3 5 5 H 1.08000 * 119.99942 * 239.99996 * 4 2 1 6 6 C 1.37871 * 120.00030 * 60.00134 * 4 2 1 7 7 N 1.31521 * 120.00051 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00127 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47422 * 59.99637 * 8 6 4 10 10 H 1.48501 * 109.47185 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46772 * 299.99666 * 8 6 4 12 12 C 1.52998 * 109.46931 * 120.00581 * 2 1 3 13 13 N 1.46502 * 109.47219 * 299.99353 * 12 2 1 14 14 C 1.34769 * 120.00267 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00157 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00035 * 180.02562 * 14 13 12 17 17 C 1.47486 * 125.59413 * 0.02562 * 16 14 13 18 18 C 1.54323 * 107.03754 * 181.00840 * 17 16 14 19 19 C 1.55153 * 103.10236 * 22.24109 * 18 17 16 20 20 H 1.09003 * 111.00505 * 82.48412 * 19 18 17 21 21 C 1.53000 * 111.00844 * 206.29737 * 19 18 17 22 22 C 1.52992 * 117.50096 * 248.74921 * 21 19 18 23 23 C 1.52993 * 117.50339 * 180.08531 * 21 19 18 24 24 C 1.47428 * 125.64860 * 180.02562 * 16 14 13 25 25 H 1.09003 * 109.47213 * 299.99686 * 1 2 3 26 26 H 1.08998 * 109.47180 * 60.00077 * 1 2 3 27 27 H 1.09006 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46959 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47594 * 300.00425 * 3 2 1 30 30 H 1.08999 * 109.47270 * 60.00329 * 3 2 1 31 31 H 0.96994 * 119.99698 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.46967 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.47955 * 60.00077 * 12 2 1 34 34 H 0.97001 * 119.99327 * 0.02562 * 13 12 2 35 35 H 1.09000 * 110.02886 * 61.64190 * 17 16 14 36 36 H 1.09005 * 109.96368 * 300.33047 * 17 16 14 37 37 H 1.09002 * 110.72057 * 263.78860 * 18 17 16 38 38 H 1.09003 * 110.71837 * 140.69433 * 18 17 16 39 39 H 1.09001 * 115.54351 * 34.41382 * 21 19 18 40 40 H 1.09004 * 117.50053 * 359.97438 * 22 21 19 41 41 H 1.09003 * 117.49807 * 145.01509 * 22 21 19 42 42 H 1.09001 * 117.50189 * 214.97676 * 23 21 19 43 43 H 1.09005 * 117.49597 * 359.97438 * 23 21 19 44 44 H 1.09000 * 110.36462 * 37.07589 * 24 16 14 45 45 H 1.08998 * 110.36847 * 274.74797 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8268 -0.4198 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6694 15 8 2.5774 -1.4791 3.7810 16 7 1.4281 0.1440 4.7699 17 6 0.5754 1.3474 4.7785 18 6 0.3404 1.7246 6.2563 19 6 1.5340 1.0524 6.9849 20 1 2.4279 1.6735 6.9256 21 6 1.1825 0.7402 8.4409 22 6 1.8976 1.5444 9.5284 23 6 2.2589 0.0745 9.3004 24 6 1.7072 -0.2491 6.1631 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7218 1.2489 33 1 1.6767 -1.7491 1.2492 34 1 0.9938 0.7577 2.3564 35 1 -0.3775 1.1331 4.2945 36 1 1.0798 2.1647 4.2630 37 1 -0.6066 1.3187 6.6121 38 1 0.3683 2.8063 6.3873 39 1 0.1459 0.4571 8.6238 40 1 2.6189 2.2956 9.2066 41 1 1.3316 1.7899 10.4270 42 1 1.9305 -0.6463 10.0492 43 1 3.2175 -0.1415 8.8285 44 1 2.7271 -0.6227 6.2548 45 1 0.9944 -1.0043 6.4943 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331812146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:50 Heat of formation + Delta-G solvation = -29.729398 kcal Electronic energy + Delta-G solvation = -22420.694464 eV Core-core repulsion = 19244.882664 eV Total energy + Delta-G solvation = -3175.811800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35382 -39.51367 -38.13834 -37.05795 -35.01072 -32.99346 -31.84984 -29.87787 -27.57693 -27.48371 -26.82611 -24.68087 -23.12978 -22.92244 -21.13198 -20.85368 -20.59321 -19.23531 -17.80565 -17.35319 -16.85208 -16.69820 -16.29201 -15.97223 -15.36295 -14.89174 -14.81880 -14.62807 -14.34964 -14.03019 -13.86610 -13.81881 -13.20191 -13.09161 -12.90427 -12.68239 -12.62371 -12.58246 -12.32927 -12.25644 -12.14162 -12.09542 -11.63394 -11.49690 -11.39280 -11.17004 -11.03326 -10.76943 -10.72213 -10.40140 -10.13301 -9.45081 -8.02319 -6.18112 1.44770 1.45366 1.52090 1.65923 2.13750 2.46125 2.86199 3.11714 3.21191 3.61889 3.67927 3.79578 4.11763 4.24488 4.25444 4.36336 4.41163 4.50530 4.52843 4.56876 4.65572 4.69392 4.86242 4.88926 4.95680 4.98054 5.04162 5.05130 5.10813 5.11182 5.18368 5.23926 5.32639 5.36497 5.38123 5.44650 5.60680 5.66142 5.66957 6.08183 6.13801 6.20752 6.43231 6.85412 7.01582 7.49434 7.57333 8.96762 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044818 B = 0.003183 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.604373 B = 8793.892238 C = 9135.175422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.644 6.644 16 N -0.641 5.641 17 C 0.088 3.912 18 C -0.109 4.109 19 C -0.060 4.060 20 H 0.083 0.917 21 C -0.143 4.143 22 C -0.167 4.167 23 C -0.191 4.191 24 C 0.129 3.871 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.261 0.739 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.404 0.596 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 6.230 21.703 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.176 4.176 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.378 5.378 14 C 0.411 3.589 15 O -0.526 6.526 16 N -0.379 5.379 17 C -0.034 4.034 18 C -0.146 4.146 19 C -0.080 4.080 20 H 0.101 0.899 21 C -0.161 4.161 22 C -0.204 4.204 23 C -0.228 4.228 24 C 0.007 3.993 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.241 0.759 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.073 0.927 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.157 5.604 21.533 22.473 hybrid contribution 0.341 -0.481 -1.295 1.423 sum -2.816 5.123 20.237 21.065 Atomic orbital electron populations 1.21656 0.97064 0.98634 1.00296 1.18344 0.93294 0.93039 0.90051 1.21650 0.97877 0.97807 1.00288 1.21237 1.31897 1.12258 0.91557 0.93759 1.25446 0.95089 0.95594 1.00924 1.69896 1.36867 1.23262 1.23733 0.85803 0.78611 0.78807 0.79503 1.20277 1.20654 1.20293 1.21154 0.96645 0.94687 0.83255 1.45205 1.55744 1.33169 1.03725 1.15763 0.80107 0.82292 0.80740 1.90841 1.45478 1.29901 1.86425 1.47733 1.54306 1.31095 1.04767 1.22396 0.94416 0.86401 1.00193 1.22644 0.98545 1.02627 0.90821 1.21858 0.99242 0.94464 0.92400 0.89912 1.22146 0.98281 1.05786 0.89910 1.23067 1.03223 0.94031 1.00115 1.23018 0.99789 0.96598 1.03349 1.22127 1.00595 0.97935 0.78678 0.94733 0.91657 0.96368 0.96387 0.91664 0.94742 0.92940 0.94767 0.94748 0.75927 0.90806 0.91010 0.89011 0.87660 0.86433 0.88628 0.87492 0.88021 0.89624 0.92714 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 2 C 0.05 2.54 0.50 -52.93 -0.03 2.52 16 3 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 4 C -0.53 -28.67 8.01 25.60 0.21 -28.46 16 5 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.56 5.15 84.65 0.44 2.00 16 7 N -0.90 -48.19 9.35 21.45 0.20 -47.99 16 8 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.17 7.57 4.50 86.38 0.39 7.96 16 13 N -0.72 -27.50 4.92 -478.55 -2.35 -29.85 16 14 C 0.71 27.53 8.49 179.06 1.52 29.05 16 15 O -0.64 -30.64 16.60 -3.98 -0.07 -30.71 16 16 N -0.64 -18.36 3.34 -828.59 -2.77 -21.13 16 17 C 0.09 1.73 6.18 86.64 0.54 2.26 16 18 C -0.11 -1.40 6.41 31.78 0.20 -1.19 16 19 C -0.06 -0.94 3.16 -9.41 -0.03 -0.97 16 20 H 0.08 1.35 8.02 -2.39 -0.02 1.33 16 21 C -0.14 -1.76 5.15 -10.80 -0.06 -1.82 16 22 C -0.17 -1.78 10.20 30.61 0.31 -1.47 16 23 C -0.19 -2.48 10.14 30.62 0.31 -2.17 16 24 C 0.13 3.09 6.28 86.85 0.55 3.64 16 25 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 26 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 27 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 30 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 31 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 32 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.40 13.43 5.15 -92.71 -0.48 12.95 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.09 0.98 7.94 -2.39 -0.02 0.96 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 1.24 8.01 -2.39 -0.02 1.22 16 40 H 0.10 1.01 8.11 -2.39 -0.02 0.99 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.05 1.52 8.04 -2.39 -0.02 1.50 16 45 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16 Total: -1.00 -64.89 352.03 3.03 -61.86 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.48 Total: 21.04 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.51 Total: 1.73 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -4.92 Total: -98.97 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.07 Total: -30.71 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -64.89 3.03 -61.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331812146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.129 kcal (2) G-P(sol) polarization free energy of solvation -64.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds