Wall clock time and date at job start Tue Mar 31 2020 02:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46806 * 2 1 4 4 C 1.50696 * 109.47264 * 240.00258 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99677 * 4 2 1 6 6 C 1.37876 * 120.00335 * 60.00303 * 4 2 1 7 7 N 1.31514 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00296 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47086 * 59.99480 * 8 6 4 10 10 H 1.48494 * 109.47288 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46879 * 299.99424 * 8 6 4 12 12 C 1.53002 * 109.47233 * 119.99882 * 2 1 3 13 13 N 1.46506 * 109.47042 * 300.00642 * 12 2 1 14 14 C 1.34771 * 119.99515 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00543 * 0.26795 * 14 13 12 16 16 N 1.34784 * 119.99547 * 179.97438 * 14 13 12 17 17 C 1.47530 * 125.66006 * 359.69011 * 16 14 13 18 18 C 1.55389 * 104.87099 * 155.96398 * 17 16 14 19 19 C 1.53944 * 101.31661 * 36.07343 * 18 17 16 20 20 C 1.52508 * 115.78543 * 94.90526 * 19 18 17 21 21 C 1.54017 * 86.67899 * 93.33998 * 20 19 18 22 22 C 1.52505 * 115.80228 * 196.41355 * 19 18 17 23 23 C 1.47336 * 125.65751 * 179.97438 * 16 14 13 24 24 H 1.08992 * 109.47399 * 299.99952 * 1 2 3 25 25 H 1.09001 * 109.47194 * 60.00125 * 1 2 3 26 26 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47248 * 179.97438 * 3 2 1 28 28 H 1.08988 * 109.47757 * 299.99916 * 3 2 1 29 29 H 1.09002 * 109.46838 * 60.00357 * 3 2 1 30 30 H 0.97005 * 120.00032 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47407 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.46986 * 60.00203 * 12 2 1 33 33 H 0.96999 * 120.00076 * 359.97438 * 13 12 2 34 34 H 1.08994 * 110.33658 * 274.95490 * 17 16 14 35 35 H 1.09004 * 110.33422 * 37.19243 * 17 16 14 36 36 H 1.08994 * 111.25387 * 277.99653 * 18 17 16 37 37 H 1.08999 * 110.94562 * 154.01219 * 18 17 16 38 38 H 1.09004 * 113.67853 * 207.78502 * 20 19 18 39 39 H 1.08997 * 113.67860 * 338.88903 * 20 19 18 40 40 H 1.09002 * 113.57082 * 269.85546 * 21 20 19 41 41 H 1.08996 * 113.57214 * 139.08615 * 21 20 19 42 42 H 1.09000 * 113.67373 * 21.12623 * 22 19 18 43 43 H 1.09000 * 113.67914 * 152.22958 * 22 19 18 44 44 H 1.09003 * 109.97719 * 301.31803 * 23 16 14 45 45 H 1.09006 * 109.98098 * 62.60103 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8262 -0.4204 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4909 3.6695 15 8 2.5811 -1.4762 3.7811 16 7 1.4287 0.1448 4.7700 17 6 0.5821 1.3530 4.7802 18 6 -0.1453 1.3187 6.1528 19 6 0.9514 0.7342 7.0614 20 6 1.8010 1.7523 7.8148 21 6 0.8068 1.5866 8.9793 22 6 0.4802 0.1943 8.4076 23 6 1.7067 -0.2484 6.1624 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7083 1.1610 -3.4844 31 1 3.1300 -0.7216 1.2491 32 1 1.6767 -1.7489 1.2493 33 1 0.9941 0.7582 2.3565 34 1 1.1985 2.2481 4.6973 35 1 -0.1426 1.3146 3.9669 36 1 -1.0171 0.6653 6.1218 37 1 -0.4232 2.3233 6.4717 38 1 2.8065 1.3992 8.0441 39 1 1.7910 2.7467 7.3686 40 1 -0.0316 2.2821 8.9389 41 1 1.2840 1.5548 9.9587 42 1 -0.5814 -0.0515 8.4332 43 1 1.1106 -0.6010 8.8052 44 1 1.3527 -1.2638 6.3405 45 1 2.7769 -0.1868 6.3602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335588244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:21 Heat of formation + Delta-G solvation = -14.678486 kcal Electronic energy + Delta-G solvation = -22723.048319 eV Core-core repulsion = 19547.889175 eV Total energy + Delta-G solvation = -3175.159143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.72281 -39.02236 -36.45051 -35.44229 -33.18287 -30.93673 -30.06360 -28.41108 -26.06495 -25.69689 -25.51661 -24.79396 -23.08080 -22.36656 -19.67217 -18.81078 -18.74005 -17.53281 -16.28016 -15.83908 -15.43376 -15.31674 -15.01473 -14.59428 -14.37059 -13.62154 -13.52890 -13.11492 -13.00969 -12.69090 -12.58093 -12.21263 -12.13974 -12.01121 -11.87817 -11.34521 -11.30706 -11.16113 -10.82160 -10.71060 -10.66910 -10.48717 -10.42080 -10.34965 -10.18259 -9.70840 -9.59879 -9.27514 -8.77052 -8.61486 -8.37119 -8.05804 -5.99687 -4.09543 2.97921 3.32130 3.36041 3.40254 3.66586 4.12134 4.24989 4.29559 4.40009 4.54693 4.57415 4.66743 5.08448 5.11448 5.17599 5.27000 5.44327 5.47567 5.51776 5.60729 5.63925 5.66074 5.77147 5.85870 5.91606 6.03040 6.14468 6.22141 6.40411 6.45997 6.54619 6.83902 6.85567 6.96915 7.06307 7.14877 7.38253 7.47733 7.58730 7.72185 8.03809 8.15210 8.41087 8.49244 8.90178 9.09799 9.56010 11.01793 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044111 B = 0.003366 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.608878 B = 8316.966113 C = 8603.682351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.643 5.643 17 C 0.102 3.898 18 C -0.107 4.107 19 C -0.096 4.096 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.124 4.124 23 C 0.144 3.856 24 H 0.004 0.996 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 4.921 19.773 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.383 5.383 17 C -0.022 4.022 18 C -0.145 4.145 19 C -0.097 4.097 20 C -0.163 4.163 21 C -0.177 4.177 22 C -0.162 4.162 23 C 0.020 3.980 24 H 0.023 0.977 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.083 4.245 19.569 20.260 hybrid contribution 0.059 -0.057 -0.942 0.946 sum -3.024 4.188 18.627 19.330 Atomic orbital electron populations 1.21813 0.97806 0.99143 0.99913 1.18353 0.92774 0.92767 0.90521 1.21812 0.98577 0.98364 0.99921 1.20960 1.31469 1.12107 0.89888 0.92441 1.24874 0.94870 0.94928 0.98817 1.69798 1.36685 1.22799 1.23282 0.86626 0.79245 0.79797 0.82150 1.20279 1.21350 1.20273 1.21591 0.97885 0.95423 0.82402 1.45519 1.55578 1.33081 1.04390 1.15599 0.80313 0.82463 0.79934 1.90878 1.43078 1.28078 1.85674 1.47647 1.55363 1.30200 1.05050 1.22314 0.93452 0.88368 0.98057 1.22499 0.96879 1.01645 0.93483 1.22048 0.96832 0.96822 0.93975 1.22820 0.98088 0.99080 0.96319 1.22874 0.99452 0.97301 0.98077 1.22749 1.01589 0.97230 0.94623 1.21506 0.99306 0.97711 0.79427 0.97674 0.89633 0.95454 0.95460 0.89639 0.97651 0.92984 0.92976 0.92999 0.77175 0.91611 0.90842 0.90175 0.89876 0.89765 0.91114 0.90174 0.91435 0.91052 0.89733 0.91661 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.27 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.48 8.01 -34.44 -0.28 -13.76 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.84 9.35 55.43 0.52 -23.32 16 8 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.15 3.36 4.50 -4.04 -0.02 3.34 16 13 N -0.73 -14.12 4.92 -65.22 -0.32 -14.44 16 14 C 0.72 13.96 8.49 -86.92 -0.74 13.23 16 15 O -0.60 -13.97 16.67 5.29 0.09 -13.88 16 16 N -0.64 -9.65 3.34 -176.34 -0.59 -10.23 16 17 C 0.10 1.15 6.60 -2.21 -0.01 1.13 16 18 C -0.11 -0.92 6.27 -24.97 -0.16 -1.08 16 19 C -0.10 -0.86 0.93 -154.49 -0.14 -1.00 16 20 C -0.13 -0.97 7.31 -26.45 -0.19 -1.17 16 21 C -0.14 -0.90 7.96 -25.70 -0.20 -1.11 16 22 C -0.12 -0.91 7.39 -26.46 -0.20 -1.11 16 23 C 0.14 1.82 6.37 -3.53 -0.02 1.80 16 24 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 2.16 6.07 -51.94 -0.32 1.84 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.39 6.89 4.64 -40.82 -0.19 6.70 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.82 7.29 -51.93 -0.38 0.45 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 38 H 0.08 0.66 8.01 -51.93 -0.42 0.25 16 39 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.06 0.83 7.86 -51.93 -0.41 0.43 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -29.89 346.18 -9.40 -39.30 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.76 Total: 3.58 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.53 Total: -2.14 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.39 Total: -48.00 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.89 -9.40 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335588244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.618 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds