Wall clock time and date at job start Tue Mar 31 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46806 * 2 1 4 4 C 1.50696 * 109.47264 * 240.00258 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99677 * 4 2 1 6 6 C 1.37876 * 120.00335 * 60.00303 * 4 2 1 7 7 N 1.31514 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00296 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47086 * 59.99480 * 8 6 4 10 10 H 1.48494 * 109.47288 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46879 * 299.99424 * 8 6 4 12 12 C 1.53002 * 109.47233 * 119.99882 * 2 1 3 13 13 N 1.46506 * 109.47042 * 300.00642 * 12 2 1 14 14 C 1.34771 * 119.99515 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00543 * 0.26795 * 14 13 12 16 16 N 1.34784 * 119.99547 * 179.97438 * 14 13 12 17 17 C 1.47530 * 125.66006 * 359.69011 * 16 14 13 18 18 C 1.55389 * 104.87099 * 155.96398 * 17 16 14 19 19 C 1.53944 * 101.31661 * 36.07343 * 18 17 16 20 20 C 1.52508 * 115.78543 * 94.90526 * 19 18 17 21 21 C 1.54017 * 86.67899 * 93.33998 * 20 19 18 22 22 C 1.52505 * 115.80228 * 196.41355 * 19 18 17 23 23 C 1.47336 * 125.65751 * 179.97438 * 16 14 13 24 24 H 1.08992 * 109.47399 * 299.99952 * 1 2 3 25 25 H 1.09001 * 109.47194 * 60.00125 * 1 2 3 26 26 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47248 * 179.97438 * 3 2 1 28 28 H 1.08988 * 109.47757 * 299.99916 * 3 2 1 29 29 H 1.09002 * 109.46838 * 60.00357 * 3 2 1 30 30 H 0.97005 * 120.00032 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47407 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.46986 * 60.00203 * 12 2 1 33 33 H 0.96999 * 120.00076 * 359.97438 * 13 12 2 34 34 H 1.08994 * 110.33658 * 274.95490 * 17 16 14 35 35 H 1.09004 * 110.33422 * 37.19243 * 17 16 14 36 36 H 1.08994 * 111.25387 * 277.99653 * 18 17 16 37 37 H 1.08999 * 110.94562 * 154.01219 * 18 17 16 38 38 H 1.09004 * 113.67853 * 207.78502 * 20 19 18 39 39 H 1.08997 * 113.67860 * 338.88903 * 20 19 18 40 40 H 1.09002 * 113.57082 * 269.85546 * 21 20 19 41 41 H 1.08996 * 113.57214 * 139.08615 * 21 20 19 42 42 H 1.09000 * 113.67373 * 21.12623 * 22 19 18 43 43 H 1.09000 * 113.67914 * 152.22958 * 22 19 18 44 44 H 1.09003 * 109.97719 * 301.31803 * 23 16 14 45 45 H 1.09006 * 109.98098 * 62.60103 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6994 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8260 -2.5201 -4.0078 10 1 1.8262 -0.4204 -5.2204 11 1 3.8065 -1.1207 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4909 3.6695 15 8 2.5811 -1.4762 3.7811 16 7 1.4287 0.1448 4.7700 17 6 0.5821 1.3530 4.7802 18 6 -0.1453 1.3187 6.1528 19 6 0.9514 0.7342 7.0614 20 6 1.8010 1.7523 7.8148 21 6 0.8068 1.5866 8.9793 22 6 0.4802 0.1943 8.4076 23 6 1.7067 -0.2484 6.1624 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 0.7083 1.1610 -3.4844 31 1 3.1300 -0.7216 1.2491 32 1 1.6767 -1.7489 1.2493 33 1 0.9941 0.7582 2.3565 34 1 1.1985 2.2481 4.6973 35 1 -0.1426 1.3146 3.9669 36 1 -1.0171 0.6653 6.1218 37 1 -0.4232 2.3233 6.4717 38 1 2.8065 1.3992 8.0441 39 1 1.7910 2.7467 7.3686 40 1 -0.0316 2.2821 8.9389 41 1 1.2840 1.5548 9.9587 42 1 -0.5814 -0.0515 8.4332 43 1 1.1106 -0.6010 8.8052 44 1 1.3527 -1.2638 6.3405 45 1 2.7769 -0.1868 6.3602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335588244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:20 Heat of formation + Delta-G solvation = -31.177415 kcal Electronic energy + Delta-G solvation = -22723.763766 eV Core-core repulsion = 19547.889175 eV Total energy + Delta-G solvation = -3175.874591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71053 -40.31983 -38.19553 -36.59445 -34.98221 -32.76244 -31.08654 -29.43743 -27.58081 -27.42889 -26.70798 -26.45287 -24.22245 -23.06772 -21.10973 -20.61242 -19.73166 -18.65822 -17.80889 -17.36915 -16.85042 -16.65655 -16.14891 -15.76209 -15.61382 -15.17246 -14.88004 -14.68137 -14.28976 -14.04432 -13.85239 -13.56185 -13.21534 -13.09577 -13.03061 -12.80246 -12.66760 -12.62605 -12.55969 -12.25969 -12.13419 -11.95562 -11.50112 -11.40246 -11.33764 -11.17759 -11.07610 -11.05495 -10.72621 -10.40574 -10.15198 -9.45342 -8.02655 -6.18491 1.44599 1.45173 1.51918 1.65771 2.13254 2.45921 3.10000 3.20872 3.46779 3.53996 3.61314 3.94492 4.00405 4.27126 4.37512 4.39243 4.48533 4.50306 4.60946 4.69000 4.79531 4.84531 4.90721 4.93503 4.96310 5.02069 5.03714 5.08008 5.10299 5.18026 5.18770 5.23687 5.26792 5.36093 5.47274 5.59652 5.61667 5.65785 5.66597 6.07279 6.13404 6.20356 6.42918 6.85010 7.01299 7.49079 7.56808 8.96435 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044111 B = 0.003366 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.608878 B = 8316.966113 C = 8603.682351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.644 6.644 16 N -0.639 5.639 17 C 0.091 3.909 18 C -0.096 4.096 19 C -0.094 4.094 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.123 4.123 23 C 0.137 3.863 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.404 0.596 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 6.428 21.308 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.053 3.947 3 C -0.176 4.176 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.379 5.379 14 C 0.411 3.589 15 O -0.527 6.527 16 N -0.377 5.377 17 C -0.031 4.031 18 C -0.134 4.134 19 C -0.094 4.094 20 C -0.164 4.164 21 C -0.165 4.165 22 C -0.161 4.161 23 C 0.014 3.986 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.241 0.759 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.261 5.801 21.144 22.335 hybrid contribution 0.426 -0.527 -1.368 1.527 sum -3.835 5.273 19.776 20.823 Atomic orbital electron populations 1.21648 0.97033 0.98615 1.00286 1.18346 0.93313 0.93043 0.90030 1.21648 0.97860 0.97794 1.00280 1.21241 1.31939 1.12291 0.91577 0.93759 1.25444 0.95072 0.95584 1.00917 1.69894 1.36849 1.23252 1.23745 0.85803 0.78620 0.78809 0.79495 1.20280 1.20628 1.20279 1.21154 0.96635 0.94677 0.83257 1.45214 1.55768 1.33212 1.03695 1.15767 0.80139 0.82263 0.80757 1.90838 1.45157 1.30249 1.86462 1.47706 1.54658 1.30700 1.04619 1.22647 0.93399 0.86923 1.00093 1.22512 0.96276 1.03320 0.91308 1.22121 0.96917 0.96487 0.93911 1.22846 0.98054 0.98801 0.96735 1.22842 0.99311 0.96554 0.97840 1.22777 1.02000 0.97965 0.93337 1.21728 0.99404 0.98513 0.78927 0.94745 0.91654 0.96388 0.96416 0.91653 0.94754 0.92926 0.94788 0.94775 0.75915 0.90421 0.90522 0.89890 0.87021 0.90319 0.90506 0.88821 0.90646 0.90272 0.89940 0.92868 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.55 0.50 -52.93 -0.03 2.52 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -28.79 8.01 25.60 0.21 -28.58 16 5 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.58 5.15 84.65 0.44 2.02 16 7 N -0.90 -48.21 9.35 21.45 0.20 -48.01 16 8 Si 0.95 43.05 29.54 68.60 2.03 45.07 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.17 7.61 4.50 86.38 0.39 8.00 16 13 N -0.72 -27.66 4.92 -478.53 -2.35 -30.01 16 14 C 0.71 27.79 8.49 179.05 1.52 29.31 16 15 O -0.64 -30.96 16.67 -3.98 -0.07 -31.03 16 16 N -0.64 -18.65 3.34 -830.08 -2.77 -21.42 16 17 C 0.09 1.84 6.60 87.00 0.57 2.41 16 18 C -0.10 -1.34 6.27 31.73 0.20 -1.14 16 19 C -0.09 -1.46 0.93 -52.17 -0.05 -1.51 16 20 C -0.13 -1.63 7.31 30.77 0.23 -1.41 16 21 C -0.13 -1.22 7.96 31.26 0.25 -0.97 16 22 C -0.12 -1.50 7.39 30.77 0.23 -1.27 16 23 C 0.14 3.40 6.37 86.26 0.55 3.95 16 24 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 25 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 29 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 30 H 0.26 13.48 8.31 -92.70 -0.77 12.71 16 31 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.40 13.48 4.64 -92.71 -0.43 13.05 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.51 7.29 -2.38 -0.02 1.49 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 0.99 8.06 -2.39 -0.02 0.97 16 38 H 0.08 1.11 8.01 -2.39 -0.02 1.09 16 39 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 44 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 45 H 0.05 1.40 7.86 -2.38 -0.02 1.38 16 Total: -1.00 -65.24 346.18 3.23 -62.01 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.53 Total: 19.64 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.66 Total: 3.75 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -4.92 Total: -99.44 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.07 Total: -31.03 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -65.24 3.23 -62.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335588244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.831 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds